@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 87_120_116300T0_kcl105: (2019-03-28 )
KLCKWTVLNSEGEIIESGSCLNTEYMKHGDIHVEFENDCTPIIFG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-----...-10-.----..-..-.-..----20...-----.....---30..--..---..-...40.....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KL
C
K
W
T
-----
V
LN-SE-G----
E
I
-IE-S-GS----CL
N
T
E
-----
Y
MKHG---
D
-
I
H
--
V
E
---FE-NDCT-PIIFG
5
HHSearch
75.13
36%
0
- C- -
-
2EB4
-
HPCG_ECOLX
A:
[230-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
G
----
Q
I
-
I
L
-
G
-
G
S
----
F
T
R
P
V
-----
P
A
R
K
G
---
D
T
F
H
--
V
D
---
Y
G
-
N
---------
33
Fugue
72.62
35%
-38
- C4 -
-
3SSB
-
IMPI_GALME
C:
[6-40]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
C
N
-
G
G
-
H
----
E
Y
-
Y
E
C
G
-
G
A
----
C
D
N
V
---------
C
A
---
D
-
L
H
--
I
Q
---
N
K
-
T
N
C
--
P
I
I
N
-
2
PsiBlast_PDB
69.64
37%
-35
- C13 -
-
5T20
3
?
A:
[8-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
G
Q
----
T
L
N
T
D
G----
H
L
K
N
G
---
D
-
F
D
--
L
V
---
M
Q
-
N
D
C
N
-
L
V
L
Y
-
1
PsiBlast_PDB
69.41
37%
-20
* C13 *
-
5T1X
-
?
A:
[8-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
G
Q
----
T
L
N
T
D
G----
H
L
K
N
G
---
D
-
F
D
--
L
V
---
M
Q
-
N
D
C
N
-
L
V
L
Y
-
24
SP3
68.63
20%
-51
- C7 -
-
1AJJ
-
?
?:
[1-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
C
------------
S
A
-
F
----
E
F
H
C
L
-
S
-
G
E
----
C
I
H
S
S
-----
W
R
C
D
G
---
G
-
P
D
--
C
K
DKS
D
E
-
E
N
C
A
------
25
SP3
68.15
24%
-89
- C5 -
-
1AYJ
-
?
?:
[2-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
C
E
R
P
-----
S
G
T
-
W
S
-
G
----
V
C
-
G
N
-
N
-
N
A
CKNQ
C
I
N
L
E
-----
K
A
R
H
G
---
S
-
C
N
--
Y
V
---
F
P
-
A
H
K
C
-
I
C
Y
F
P
44
Fugue
67.84
28%
-17
- C10 -
-
2KSW
-
?
A:
[1-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPVGSDCEP
K
L
C
T
M
D
LVPHC
F
L
N
-
P
E
K
G
----
I
V
-
V
V
-
H
-
G
G
----
C
A
L
S
K
-----
Y
K
C
Q
N
---
P
-
N
H
EK
L
G
---
Y
T
-
H
E
C
E
-
E
A
I
K
N
27
SP3
67.77
17%
-99
- C9 -
-
1BIA
-
?
?:
[271-317]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
N
R
P
V
-----
K
L
I
-
I
G
-
D
----
K
E
-
I
F
---
G
I
----
S
R
G
I
D
-------
K
Q
G
---
A
-
L
L
--
L
E
---
Q
D
-
G
I
I
K
-
P
W
M
G
G
48
Fugue
65.32
22%
68
- C10 -
-
2BIC
-
?
A:
[1-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDP
L
Y
C
Q
A
I
GCP--
T
L
Y
-
S
E
-
A
----
N
L
-
A
V
-
S
-
K
E
----
C
R
D
Q
G
------
K
L
G
D
---
D
-
F
H
--
R
C
---
C
E
-
E
Q
C
G
-
S
T
T
P
A
28
SP3
64.26
26%
-12
- C7 -
-
1BX7
-
?
?:
[3-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNTCGG
E
T
C
------------
S
A
-
A
----
Q
V
-
C
L
-
K
-
G
K
----
C
V
C
N
E
VHCRI
R
C
K
Y
G
LKK
D
-----------
E
-
N
G
C
E
Y
P
C
S
C
A
32
SP3
63.41
22%
107
- C13 -
-
1B7T
-
MYS_ARGIR
A:
[29-131]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DG
K
K
N
C
W
V
-----
P
D
E
-
K
E
-
G
FASA
E
I
-
Q
S
-
S
K
G
D
----
E
I
T
V
K
-----
I
V
A
D
S
---
S
--
T
--
R
T
---
V
K
-
K
D
----
D
I
Q
S
31
SP3
63.13
20%
46
* C7 *
-
1EXT
-
TNR1A_HUMAN
A:
[106-162]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NCSLCLNGTVHLSC
Q
E
K
Q
N
T
-----
V
C
T
C
H
A
-
G
----
F
F
-
L
R
-
E
-
N
E
----
C
V
S
C
S
-----
N
C
K
K
S
---
L
------
E
---
C
T
-
K
L
C
L
-
P
Q
I
E
N
34
Fugue
55.73
34%
45
* C8 *
-0.05
3LZK
-
?
A:
[19-358]
FQGMKLATLKDSTRDGKLVVVSKDLTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLIPGELAKGFGFYQSKPSSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKLEGGPGRPVSE
G
G
A
G
Y
S
-----
C
I
A
-
E
L
-
R
MI--
E
T
-
I
E
-
G
-
G
A
-----
P
K
T
Q
-----
F
L
K
F
G
---
D
--
V
--
V
R
---
I
E
M
K
D
R
T
G
H
S
I
F
G
10
HHSearch
55.44
35%
-100
- C11 -
-
2KZK
-
ATG34_YEAST
A:
[319-338]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
M
K
-----
V
V
N
-
Q
D
-
G
----
E
T
-
I
L
-
V
-
G
K
----
C
A
D
---------------------------------------
4
HHSearch
54.86
36%
126
- C8 -
0.09
2EB6
-
HPCG_ECOLX
A:
[230-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
G
----
Q
I
-
I
L
-
G
-
G
S
----
F
T
R
P
V
-----
P
A
R
K
G
---
D
T
F
H
--
V
D
---
Y
G
-
N
---------
20
HHSearch
53.82
25%
-25
- C8 -
0.13
6FOH
-
?
A:
[183-211]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
-
G
----
D
I
-
I
L
-
T
-
G
T
----
P
K
G
V
G
-----
P
V
K
E
N
D--
E
-
I
E
--
A
G
---
I
H
-
G
---------
38
Fugue
53.47
23%
49
- C8 -
-0.03
1SV6
-
MHPD_ECOLI
A:
[1-261]
---------------------------------------------------------------------MTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLAR
K
M
A
S
L
G
-----
E
P
L
-
R
T
-
G
----
D
I
-
I
L
-
T
-
G
A
----
L
G
P
M
V
-----
A
V
N
A
G
---
D
R
F
E
--
A
H
---
I
E
-
G
-------
I
G
30
SP3
53.28
20%
-109
* C11 *
-
1NUB
-
SPRC_HUMAN
A:
[4-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
----
C
Q
N
-
H
-----
H
C
K
H
G
---
K
-
V
C
--
E
L
---
D
E
-
N
N
-
T
-
P
M
C
V
-
42
Fugue
52.46
22%
-81
- C10 -
-
1F93
-
HNF1A_MOUSE
E:
[1-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
-----
Q
L
Q
-
T
E
-
L
----
L
A
-
A
L
-
L
-
E
S
----
G
L
S
K
E
-----
A
L
I
Q
A
-------------------------
L
G
43
Fugue
51.17
28%
71
- C6 -
-
1IYC
-
SCAB_ORYRH
A:
[1-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
P
K
L
P
-------
D
-
D
K
-
V
----
L
I
-
R
S
-
R
-
S
N
----
C
-----------
P
K
G
---
K
-
V
W
--
N
G
---
F
---
D
C
K
S
P
F
A
F
S
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
KL
C
K
W
T
V
LNSEG
E
I
IESGSCL
N
T
E
Y
MKHG
D
I
H
V
E
FENDCTPIIFG
49
100.00
100%
0
- C- -
M049
-
A:
[10-38]
---------
S
E
G
E
I
I
E
S
G
S
C
L
N
T
E
Y
M
K
H
G
D
I
H
V
E
F
E
N
-------
G