@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B2_118640T0_kcl41: (2019-03-28 )
RICKVGIYRAAKDNNWRLRAARKIRISMDNTPMQFQWDYKDGASKEATYKVELHYEGCEAKVVGDQKLPAYLTIKGEI
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------.....--..--..--10.....--...20--.-.-----.......30.---.---....---.--.40-..----....----------.---..50--.---.-..----.-.---.---.-----60.-.------.-..---------------------------------...70....---...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------R
I
C
K
V
--
G
I
--
Y
R
--AAKDN
N
W
--
R
L
R
A
---
A
-
R
-----
K
I
R
I
SMDNT
P
---
M
---
Q
F
Q
W
---D--YK--DG----ASK
E
----------
A
---
T
Y
K
V
--
E
---
L
-
H
Y----E-G---C---
E
-----
A
K
V
-V------G-DQ---------------------------------KL
P
A
Y
L
T
I
K---GEI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
SP3
64.80
23%
-5
- C5 -
-
1H8L
1
CBPD_LOPSP
A:
[302-380]
-----------------------------------------------------------------------------------------------------------------------------------
G
I
W
--
G
F
--
V
L
--
D
A
T
D
G
R
G
--
I
L
N
A
-------------
T
I
S
V
A
D
I
N
---
H
---
P
V
T
----
T
--
Y
K
--
D
G
D
Y
W
R
L
L
V
Q
----------
G
---
T
Y
K
V
--
T
---
A
-
S
A
----
R
-
G
---
Y
---
D
P
V
T
K
T
V
E
V
-
D
------
S
-
K
G
---------------------------------
G
V
Q
V
N
F
T
L
S
---
R
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
60.14
23%
-10
* C5 *
-
2OPC
1
?
A:
[13-127]
-------------------------------------------------------------------------------------------------------------------------------------
E
--
G
Y
--
T
R
--
F
Y
R
S
P
T
A
--
S
V
I
L
---
S
-
G
-----
L
V
K
V
K
W
D
N
E
Q
---
M
T
M
P
L
F
K
W
------
I
G
--
G
E
----
Q
A
E
E
----------
L
---
H
F
C
V
--
H
---
I
A
H
S
----
S
-
G
---
P
KLN
R
-----
A
R
S
-
L
------
G
-
T
V
NSNMDQ
H
W
A
Q
AQRNSGATRRTIEGFHLFENDIP
N
F
P
D
Y
I
K
I
K
---
L
V
P
KT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
57.06
27%
44
- C2 -
-0.16
5FQ3
-
?
A:
[15-213]
--------------------------------------------------------------------------------F
V
T
L
E
R
E
G
DE
K
I
V
L
E
KG
Q
P
F
V
EP
G
Y
Y
A
E
M
NGEDITES
V
Q
I
K
G
SVDVN
T
P
G
I
Y
N
L
---
V
--
Y
A
--
A
Y
N
E
D
G
F
--
A
K
T
F
---
T
-
R
-----
T
V
Y
V
A
-
D
N
T
A
---
S
---
P
L
---------
K
--
S
G
----------------------
I
Y
T
V
--
A
-----------
E
-
G
---
S
---
K
-----
R
T
A
-
P
------
S
-
V
V
---------------------------------
A
F
S
G
Y
--------
E
I
V
I
F
Q
MEPG
I
F
Y
I
SDFLGGWYDQRAGYGPDY
A
M
V
G
K
F
E
L
N
DDN
T
I
T
P
L
E
S
Y
V
A
GWGDSMDQMTN
T
L
L
D
PATG
T
L
K
W
T
V
A
Y
AG
Q
L
S
F
D
I
I
V
K
Q---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
52.26
14%
40
* C2 *
-
1CDY
-
?
?:
[98-178]
--------------------------------------------------------------------------------------------------------------------------------------------
F
G
--
L
T
A
N
S
D
T
--
H
L
L
Q
---
G
-
Q
-----
S
L
T
L
T
L
E
S
P
P
G
S
S
P
---
S
V
Q
C
---
R
--
S
P
--
R
G
----
K
N
I
Q
G
G
KTL-----
S
---
V
S
Q
L
--
E
---
L
-
Q
D
----
S
-
G
T
--
W
---
T
-----
C
T
V
-
L
------
Q
-
N
Q
---------------------------------
K
K
-
V
E
F
K
I
D
---
I
V
V
L
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
51.94
20%
62
- C2 -
0.03
5LDV
5
?
A:
[1-408]
--------------------------------------------------------------------------------------------------GAMGP
L
E
E
A
I
K
D
V
D
V
S
G
V
L
R
Y
R
Y
D
T
G
N
F
D
KN
F
L
N
N
S
--
N
L
--
N
N
--
S
K
Q
D
H
K
Y
--
R
A
Q
V
---
N
-
F
-----
S
A
A
I
A
-
D
N
F
K
---
A
---
F
V
Q
F
---
D
--
Y
N
A
V
D
G
----
G
T
G
A
TNAE
K
G
L
F
VR
Q
---
L
Y
L
T
--
Y
---
T
-
N
E
----
D
-
V
---
A
---
T
-----
S
V
I
-
A
------
G
-
K
Q
---------------------------------
Q
L
N
I
I
W
T
D
N
---
G
V
D
G
L
V
G
T
G
V
K
V
V
N
NSIDG
L
T
L
A
A
F
A
V
DSFMAAEQGSDLLGQ
S
T
Y
V
GNGKNNNDSFKLDSI
G
N
L
Y
G
A
A
A
V
G
S
Y
DLAG
G
Q
F
N
P
Q
L
W
L
A
Y
WDQ
V
A
F
F
Y
A
V
D
A
A
Y
S
T
T
IG
I
N
W
T
L
E
G
A
Y
L
G
N
S
L
D
S
E
L
D
D
K
KT
Y
A
N
G
N
L
F
A
L
K
G
S
I
E
V
NG
W
D
A
S
L
G
G
L
Y
Y
G
D
KE
K
A
S
T
VVIEDQGNLGSLLAGEEIFYTTGSRLN
G
D
T
G
R
N
I
F
G
Y
V
T
G
G
Y
T
F
NE
T
V
R
V
G
A
D
F
V
Y
G
G
T
K
T
EATTHLGG
G
K
K
L
E
A
V
A
R
V
D
Y
KYSPK
L
N
F
S
A
F
Y
S
Y
V
N
L
DQGVNTN
E
S
A
D
H
S
T
V
R
L
Q
A
L
Y
K
F---------------------------------------
15
Fugue
51.44
24%
-
- C2 -
0.07
4U3Q
-
TA17_TREPA
A:
[10-130]
---------------------------------------------------------------------------------------------------------------------------K
A
K
A
E
K
V
E
C
A
L
KG
G
I
--
F
R
G
T
L
P
I
D
T
T
V
--
T
F
N
A
DG
T
A
-
Q
-----
K
V
E
L
S
--
P
L
T
---
Y
---
R
G
T
W
---
M
--
V
R
--
E
D
----
G
I
V
E
----------
L
---
S
L
V
E
--
K
---
E
-
L
Y
----
E
-
L
---
I
---
D
-----
S
N
S
-
V
R
Y
MGAP
G
-
A
E
---------------------------------
M
A
P
F
Y
V
L
K
K
---
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
SP3
50.93
17%
120
- C2 -
0.22
1FNM
-
EFG_THETH
A:
[404-482]
------------------------------------------------------------------------------------------------------------------------------VPE
P
V
I
D
V
--
A
I
--
E
P
--
K
T
K
A
D
Q
E
--
K
L
S
Q
---
A
L
A
-----
R
L
A
---
E
E
D
P
-------
T
F
R
V
---
S
---
T
--
H
P
----
E
T
G
Q
----------
T
---
I
I
S
G
MG
E
---
L
-
H
L
----
E
-
I
---
I
---
V
-----
D
R
L
-
K
------
R
-
E
F
---------------------------------
K
V
D
A
N
V
G
-
K
---
P
Q
V
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
SP3
50.35
15%
78
- C2 -
0.40
1RL1
-
SGT1_HUMAN
A:
[138-229]
------------------------------------------------------------------------------------------------------------------------S
K
I
K
Y
D
W
Y
Q
T
E
S
Q
V
--
V
I
--
T
L
--
M
I
K
N
V
Q
----------
K
-
N
-----
D
V
N
V
E
F
S
E
K
E
---
L
---
S
A
L
V
---
K
--
L
P
--
S
G
------
E
D
----------
Y
---
N
L
K
L
--
E
---
L
-
L
H
PIIP
E
-
Q
---
S
---
T
-----
F
K
V
-
L
------
S
-
T
----------------------------------
K
I
E
I
K
L
K
K
P
---
E
A
V
RWEKLEGQG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
SP3
50.30
15%
8
- C2 -
0.15
1PC0
-
RNP1_ARCFU
A:
[17-77]
----------------------------------------------------------------------------------------------------------------------------------
G
L
M
V
--
E
V
--
V
E
--
S
P
N
H
S
E
------
V
---
G
-
I
-----
K
G
E
V
V
-
D
E
T
Q
---
N
---
T
L
K
I
---
M
--
T
E
--
K
G
L
K
V
V
A
K
R
G
----------
R
---
T
F
R
V
--
W
------
Y
----
K
-
G
---
K
---
I
-----
M
R
I
-
K
------
G
-
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
SP3
50.17
19%
52
- C2 -
0.14
1CWV
-
A:
[302-392]
--------------------------------------------------------------------------------------------------------------------------------P
T
L
T
G
I
--
L
V
NG
Q
N
--
F
A
T
D
K
G
F
PK
T
I
F
K
---
N
-
A
-----
T
F
Q
L
Q
M
D
N
D
V
---
A
NNT
Q
Y
E
W
---
S
S
S
F
T
--
P
N
----
V
S
V
N
----------
D
---
Q
G
Q
V
--
T
---
I
-
T
Y
----
Q
T
Y
---
S
---
E
-----
V
A
V
-
T
------
A
K
S
K
---------------------------------
K
F
P
S
Y
S
V
S
Y
---
R
F
Y
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
47.75
18%
50
- C2 -
0.06
3M45
3
CADM2_MOUSE
C:
[9-105]
----------------------------------------------------------------------------------------------------------------QFPLTQNVTVVEGGTAI
L
T
C
R
V
--
D
Q
--
N
D
--
N
-
T
S
L
Q
W
--
S
N
P
A
---
Q
-
Q
-----
T
L
Y
F
D
D
K
K
A
L
---
R
---
D
N
R
I
---
E
--
L
V
--
R
A
----
S
W
H
E
----------
L
---
S
I
S
V
--
S
DVS
L
-
S
D
----
E
-
G
QYT
C
---
S
-----
L
F
T
-
M
------
P
-
V
K
---------------------------------
T
S
K
A
Y
L
T
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
46.28
14%
-8
- C2 -
0.14
1A7G
-
E:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------ATTP
I
I
H
L
K
--
G
D
--
A
N
--
I
L
K
C
L
R
Y
--
R
L
S
K
-----
Y
-----
K
Q
L
Y
E
Q
V
S
S
T
---
W
---
H
W
T
C
---
T
------
D
G
----
K
H
K
N
----------
A
---
I
V
T
L
--
T
---
Y
-
I
S
----
T
-
S
---
Q
---
R
-----
D
D
F
-
L
------
N
-
T
V
---------------------------------
V
I
P
N
T
V
S
V
S
---
T
G
Y
MTI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
SP3
46.21
14%
-44
- C2 -
0.34
1E2W
-
CYF_CHLRE
A:
[169-232]
----------------------------------------------------------------------------------------------------------------------------------------
T
I
--
Y
N
--
A
S
--
A
A
G
--
K
I
V
A
---
I
-
T
-----
A
L
S
--
E
K
K
G
G
---
F
---
E
V
S
I
---
E
--
K
A
--
N
G
------
E
V
----------
V
---
V
D
K
I
--
P
-----------
A
-
G
---
P
---
D
-----
L
I
V
K
E
------
G
-
Q
T
V
--------------------------------
Q
A
D
Q
P
L
T
N
N
---
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
SP3
45.36
20%
99
- C2 -
0.11
1F00
-
EAE_ECO27
I:
[753-841]
------------------------------------------------------------------------------------------------------------------------TLTIDDGNI
E
I
V
G
T
--
G
V
---
K
--
G
K
L
P
T
V
W
--
L
Q
Y
G
---
Q
-
V
-----
N
L
K
A
S
G
G
N
G
--------
K
Y
T
W
---
R
--
S
A
--
N
P
AI--
A
S
V
D
----------
A
S--
S
G
Q
V
--
T
---
L
-
K
E
----
K
-
G
---
T
T--
T
-----
I
S
V
-
I
------
S
-
S
D
---------------------------------
N
Q
T
A
T
Y
T
I
A
---
T
P
N
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
44.44
23%
116
- C4 -
-
5L2R
14
?
A:
[64-604]
D
F
H
F
S
A
IFQPTDPHHHQ
T
E
F
A
K
VEGSEKY
V
E
E
V
E
V
FG
R
Q
A
L
K
V
NP
E
A
L
T
I
L
A
H
R
A
F
S
D
V
H
H
F
FR
K
D
H
L
E
G
W
R
R
A
I
EDPEAS
D
N
D
R
Y
V
A
T
T
L
L
K
N
A
C
I
A
A
GRVLPSCQDTGTAIVL
G
K
R
G
ELCWTGGE
D
E
K
Y
L
S
K
--
G
I
--
W
N
--
A
Y
R
Y
H
N
L
--
R
Y
S
Q
---
T
-
A
A
LDMF
K
E
C
N
T
G
D
N
L
P
---
A
---
Q
L
D
L
---
L
--
A
V
--
P
G
----
S
D
Y
E
----------
F
---
L
F
I
A
--
K
------
G
----
G
-
G
---
S
---
A
-----
N
K
A
-
Y
------
L
-
Y
Q
---------------------------------
E
T
K
A
L
L
N
P
K
---
S
L
R
A
F
I
E
E
K
L
K
T
L
GTAACPPYH
I
A
L
V
I
G
GTS
A
E
M
T
M
K
T
V
K
L
A
S
C
RYYDSLPTTGDKYG
R
A
F
R
D
P
E
W
E
K
I
V
M
E
V
A
Q
K
SGIGAQFGGKYFAH
Q
A
R
V
I
R
L
P
R
H
GA
S
C
P
V
G
L
A
V
S
C
SAD
R
Q
I
L
A
H
I
N
KS
G
I
Y
I
E
Q
L
EQNPAQYLPT
S
V
K
V
D
LKRP
I
D
K
V
R
Q
Q
L
S
Q
Y
PVG
T
R
V
M
L
N
G
T
L
I
V
A
R
D
I
A
H
A
K
I
K
E
M
M
D
N
GEPLP
E
Y
M
K
T
S
P
I
Y
Y
A
G
P
A
K
TPEGYAS
G
S
F
G
P
T
T
AGRMDSY
V
D
L
F
Q
S
H
GGSY
I
T
L
A
K
G
N
RS
K
Q
V
T
D
A
C
K
K
H
G
G
F
Y
L
G
S
IGGP
A
A
I
L
A
K
DSIK
Q
V
T
C
L
A
FPELGME
A
V
W
K
I
E
V
E
D
F
P
A
F
IVVDDKGNDMYSKTLA
1
PsiBlast_PDB
43.39
32%
36
- C4 -
-
2YMW
7
LODA_MARM1
A:
[344-387]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
F
---
D
--
Y
R
--
D
G
SA--
A
N
K
A
----------
N
---
R
M
K
Y
--
Y
---
N
-
Y
F
----
R
-
Q
---
L
---
D
-----
N
K
V
-
I
------
G
-
D
Y
---------------------------------
D
Q
P
Q
Q
V
L
M
S
---
S
E
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
43.11
13%
72
- C3 -
-
5C9F
-
?
A:
[1-132]
----------------------------------------------------------------------------------------------------M
Y
K
W
S
T
E
V
G
E
I
I
I
A
RNRDG
H
F
Y
I
N
A
F
V
NN
V
K
I
K
F
--
M
V
--
D
T
--
G
A
S
D
I
A
L
--
T
K
E
D
---
A
-
Q
-----
K
L
G
F
D
L
T
K
L
K
---
Y
---
T
R
T
Y
---
L
--
T
A
--
N
G
----
E
N
K
A
----------
A
---
P
I
T
L
--
N
---
S
-
V
V
----
I
-
G
-----------------
K
------
E
-
F
K
---------------------------------
N
I
K
G
H
V
G
-
L
---
G
D
L
D
I
S
L
L
G
M
S
L
L
E
R
FK
G
F
R
I
D
KD
L
L
I
L
N
Y
A
A
A
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
42.59
32%
47
- C4 -
-
2J8G
1
LYS_BPCP1
A:
[56-101]
-------------------------------------------------------------------------------------------------------------------------------------
I
--
G
F
--
Y
H
--
F
A
R
F
G
G
D
--
V
A
E
A
---
E
-
R
-----
E
A
Q
F
F
L
D
N
V
P
---
M
---
Q
V
K
Y
L
V
L
D
--
Y
Q
--
D
D
----
P
S
G
D
----------
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
42.39
17%
138
- C2 -
0.26
4ZZF
-
?
A:
[127-272]
------------------------------------------------------------------------------------------NSVSMIG
K
I
A
E
T
DVS
G
A
N
F
DG
N
N
K
L
S
F
S
L
F
F
DEKIDASK
G
V
P
A
I
--
Q
I
--
L
N
--
E
N
N
E
L
V
K
--
T
I
P
L
---
K
-
D
-----
Y
---
N
G
Q
K
G
Y
---
I
---
N
F
E
W
---
D
--
G
T
--
N
E
----
K
G
E
K
----------
V
PK
G
N
Y
K
I
--
K
---
A
-
E
Y
----
N
-
L
--------------------------
D
S
---------------------------------
H
S
K
Q
Y
L
Q
T
R
IGR
G
E
V
E
S
V
I
F
DKG
K
P
M
L
R
M
GE
M
V
L
P
IDSAI
E
F
Y
Q
P
DQK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
42.27
32%
63
- C4 -
-
1OBA
-
LYS_BPCP1
A:
[56-101]
-------------------------------------------------------------------------------------------------------------------------------------
I
--
G
F
--
Y
H
--
F
A
R
F
G
G
D
--
V
A
E
A
---
E
-
R
-----
E
A
Q
F
F
L
D
N
V
P
---
M
---
Q
V
K
Y
L
V
L
D
--
Y
E
--
D
D
----
P
S
G
D
----------
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------