@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : BR29_105000T0_kcl87: (2019-03-29 )
PCVITIDGPYNPKYNFYPSHGRGVTGPHGQVVIGDFTCTVGATCNQLTCNAPQPEYSILGVDS
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-.------..--10-........20----..--.-.-..-..----.30----.----.----...-----.------------..40..--.-.---.....50-----.---.--.-..--.--...--60.-.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
C
V
I
T
I-D------GP--YN-PKYNFYPSH-----GR--G-V-TG-PH----G
Q
V
----
V
----
I
----
G
D
F
-----
T
------------
C
TV-GA--T-C---NQLTCN------A---P--Q-PE--
Y
--
S
I
L--GVD-S
13
Fugue
72.26
28%
-33
- C2 -
0.15
2YN5
-
?
A:
[1-283]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPPNAPVVTYSDIVNDLIIMQGTAEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNRSDDVPLDIMKEVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDINGTVYNAEKNADGVWFFTPGTPLADGSYTISVIASDAAGNQKNSL
P
I
T
V
T
I
-
D
------
S
T
-------------------------
L
-
T
V
-
P
E
----
I
A
L
----
A
----
A
----
G
E
D
-----
N
----------------
G
A
--
S
-
D
---
S
D
N
V
T
N
------
H
---
T
--
Q
-
P
K
--
F
--
T
L
Q
--
H
I
D
-
A
33
SP3
68.80
22%
40
* C2 *
-
1CDY
-
?
?:
[98-178]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGLTANSDTHLLQGQ
S
L
T
L
T
L
-
E
------
S
P
PG
S
S
-
P
S
V
Q
C
R
S
P
R
-----
G
K
--
N
-
I
-
Q
G
-
G
K
TLSV
S
Q
L
----
E
----
L
QDS-
G
T
W
-----
T
------------
C
T
V
-----
L
-
Q
---
N
Q
K
K
-
V
------
E
---
F
--
K
-
I
D
--
I
--
V
V
L
--
A
----
32
SP3
68.39
23%
70
- C2 -
-
1HFI
-
?
?:
[1-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKI
P
C
S
----
Q
------
P
P
--
Q
I
-
E
H
G
T
I
N
S
S
R
-----
S
S
--
Q
-
E
-
S
Y
-
A
H
----
G
T
K
----
L
----
S
------
Y
-----
T
------------
C
E
G
-
G
F
--
R
-
I
SEE
N
E
T
T
C
Y
MGKWSS
P
---
P
--
Q
-
C
E
---------------
30
SP3
66.91
26%
-16
* C7 *
-
1QHO
-
AMYM_GEOSE
A:
[496-576]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASA
P
Q
I
G
S
V
--------
A
P
--
N
M
-
G
I
----
P
G
N
VVTID
G
K
--
G
-
F
-
G
T
-
T
Q
----
G
T
V
----
T
----
F
----
G
G
V
-----
T
------------
A
T
V
K
S
W
--
T
-
S
---
N
R
I
E
V
Y
------
V
---
P
--
N
M
A
A
GL
T
DV
K
V
T
AG
G
V
S
-
S
15
Fugue
64.81
23%
-18
- C4 -
-
4ZRX
7
?
A:
[5-584]
ENYYVKHVEFPQSATIEQKVDMAARLVPTPQQYAWQQMELTAFLHFGINTFTGREWGDGKEDPALFNPSELDAEQWVRTLKEAGFKMVLLTAKHHDGFCLWPTATTKHSVASSPWKNGQGDVVKELRAACDKYDMKFGVYLSPWDRNAECYGDSPRYNDFFIRQLTELLTNYGEVHEVWFDGANGEGPNGKKQVYDWDAFYQTIQRLQPKAVMAIMGDDVRWVGNEKGVGRETEWNATVLTPGIYARSQENNKRLGVFSKAEDLGSRKILEKATELFWYPSEVDVSIRPGWFYHAEEDGKVKSLKHLSDIYFQSVGYNSVLLLNIPPDRRGLIHEADIKRLKEFADYRQQTFADNRVKNGRKYWSTTSGGEAVYALKSKSEINLVMLQEDITKGQRVEAFTVEALTDNGWKEVGKGTTIGYKRMLRFPAVNANKLRVRIDECRLTAYVSQVAAYYAEPLQEETTKEDWNNLPRSGWKQVAASPLTIDLGKTVTLSSFTYAPSKAEVKPTMAFR
Y
Q
F
F
V
S
M
D
------
G
K
------
S
W
K
E
V
P
A
S
-----
G
E
FS
N
-
I
M
H
N
-
P
L
----
P
Q
T
----
V
----
A
------
F
-----
S
------------
Q
K
V
-
Q
A
--
R
-
F
---
I
K
L
E
A
T
------
T
---
P
-----
D
--
A
--
T
V
A
--
K
V
N
M
N
25
Fugue
61.93
30%
41
- C3 -
-
1E0F
-
?
I:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
F
-----
G
M
--
G
-
K
-
V
P
C
P
D
----
G
E
V
----
G
----
Y
TCDC
G
E
K
-----
I
------------
C
L
Y
-
G
Q
--
S
-
C
---
N
D
G
Q
C
S
GDP---
K
---
P
--
S
-
S
E
--
F
--
E
E
F
--
E
I
D
-
E
21
Fugue
59.38
22%
-8
* C5 *
-
4RFU
3
?
A:
[7-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APIMTQGSLYNDSLSTNDFKSILLGSTPLDIAPDGAVFQL
D
R
P
L
S
I
-
D
YSLGTG
D
V
--
D
R
-
A
V
Y
W
H
L
K
K
F
-----
A
G
--
N
-
A
-
G
T
-
P
A
----
G
W
F
----
R
----
W
----
G
I
W
DNFNK
T
------------
F
T
D
-
G
V
--
A
-
Y
---
Y
----
S
------
D
---
E
--
Q
-
P
R
--
Q
--
I
L
L
--
P
V
G
-
T
29
SP3
57.91
23%
44
- C3 -
-
1E0F
-
?
I:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
F
-----
G
M
--
G
K
V
-
P
C
-
P
D
----
G
E
V
GYTC
D
----
C
----
G
E
K
-----
I
------------
C
L
Y
-
G
Q
--
S
-
C
---
N
D
G
Q
C
S
------
G
DPK
P
--
S
-
S
E
--
F
--
E
E
F
--
E
I
D
-
E
24
Fugue
57.61
20%
-39
- C5 -
-
4HPM
-
BCORL_HUMAN
A:
[5-122]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DD
F
M
F
E
L
S
-
D
------
K
P
--
L
L
-
P
C
Y
N
L
Q
V
S
V
-----
S
R
--
G
------
P
C
----
N
W
F
----
L
----
F
----
S
D
V
-----
L
------------
K
R
L
-
K
L
--
S
-
S
---
R
I
F
Q
A
R
------
F
---
P
--
H
-
F
E
--
I
--
T
T
M
--
P
K
A
-
E
38
SP3
54.92
19%
-82
* C3 *
-
1KLO
-
?
?:
[122-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
A
C
N
P
-
Y
------
G
T
--
V
Q
-
Q
Q
S
S
C
N
P
V
T
-----
G
Q
--
C
-
Q
-
C
L
-
P
H
-------------------------------------------
V
S
-
G
R
--
D
-
C
---
G
T
--
C
--------------
D
-
P
G
--
Y
----
Y
--
N
L
Q
-
S
14
Fugue
54.39
26%
34
- C6 -
-
5GYD
2
MDM12_YEAST
A:
[1-268]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMSFDINWSTLESDNRLNDLIRKHLNSYLQNTQLPSYVSNLRVLDFDLGKV
G
P
A
I
T
L
-
K
------
E
I
--
T
D
-
P
L
D
E
F
Y
D
S
I
-----
R
E
--
E
-
S
-
P
N
-
D
I
----
Q
F
L
----
L
EVEY
K
----
G
D
L
-----
L
------------
V
T
I
-
G
A
--
D
-------
L
V
L
N
------
Y
---
P
--
V
-
E
K
--
F
--
M
T
L
--
P
V
K
-
L
31
SP3
53.87
20%
-4
* C8 *
-
1GOI
2
CHIB_SERMA
A:
[447-498]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
L
P
I
M
T
A
P
A
Y
-----
V
P
--
G
-
T
-
T
Y
-
A
Q
----
G
A
L
----
V
----
S
YQ--
G
---------------------
Y
V
-
W
Q
--
T
-
K
---
W
G
Y
I
T
S
------
A
---
P
--
G
-
S
D
--
S
--
A
W
L
--
K
V
G
-
R
27
Fugue
52.27
22%
-71
* C4 *
-
2NB9
-
?
A:
[1-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
T
-
C
------
P
E
--
C
A
-
S
R
Y
F
V
D
D
S
K
-------------
V
G
-
P
D
----
G
R
V
----
V
----
R
---------------------------
C
-
A
S
--
C
-
G
---
N
R
W
T
A
F
------
K
---
D
--
E
-
A
E
--
L
--
E
L
V
--
P
R
---
17
Fugue
51.00
23%
30
- C2 -
0.21
2LVC
-
A:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMPVHIVDPREHVFVHAITSECVMLACEVDREDA
P
V
R
W
Y
K
-
D
------
G
Q
--
E
V
-
E
E
S
D
F
V
V
L
E
-----
N
E
--
G
------
P
H
----
R
R
L
----
V
----
L
----
P
A
T
-----
Q
------------
P
S
D
-
G
---------
G
E
F
Q
C
V
------
A
---
G
----
D
E
--
C
--
A
Y
F
--
T
V
T
-
I
2
PsiBlast_PDB
48.63
44%
-
- C12 -
-
1W0S
-
PROP_HUMAN
A:
[231-264]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
-
W
G
-
P
W
----
G
P
V
----
S
----
P
----
C
P
V
-----
T
------------
C
G
L
-
G
Q
--
T
-
M
---
E
Q
R
T
C
N
------
H
---
P
--
V
-
P
Q
--
H
------------
1
PsiBlast_PDB
48.63
44%
-
* C12 *
-
1W0R
-
PROP_HUMAN
A:
[231-264]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
-
W
G
-
P
W
----
G
P
V
----
S
----
P
----
C
P
V
-----
T
------------
C
G
L
-
G
Q
--
T
-
M
---
E
Q
R
T
C
N
------
H
---
P
--
V
-
P
Q
--
H
------------
36
SP3
45.29
12%
-78
- C8 -
-
1FBR
-
?
?:
[1-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
E
------
K
C
--
F
D
-
H
A
A
G
T
S
Y
V
V
-----
G
E
--
T
-
W
-
E
K
-
P
Y
----
Q
G
W
----
M
----
M
----
V
D
C
-----
T
------------
C
-
L
-
G
E
--
G
-
S
---
G
R
I
T
C
T
------
S
---
R
---------------------
16
Fugue
44.84
14%
-48
- C6 -
-
1GTD
-
PURS_METTH
A:
[2-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFMV
E
V
R
I
R
L
-
K
------
K
G
M-
L
N
-
P
E
A
A
T
I
E
R
A
-----
L
A
--
L
-
L
-
G
Y
-
E
V
----
E
D
T
----
D
----
T
----
T
D
V
-----
I
TFTMDEDSLEAV
E
R
E
-
V
E
--
D
M
C
---
Q
R
L
L
C
N
------
P
---
V
--
I
-
H
D
--
Y
--
D
V
S
--
I
N
E
--
18
Fugue
44.61
20%
37
- C6 -
-
4PX7
2
PGPB_ECOLI
A:
[1-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRSIARRTAVGAALLLVMPVAVWISGWRWQPGSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPR
P
F
V
I
W
L
-
E
------
K
T
--
H
H
M
P
V
D
K
F
Y
T
L
K
-----
R
----------------------------------------------------------
A
E
--
R
-
G
---
N
L
V
K
E
Q
------
L
---
A
--
E
-
P
Q
--
Y
--
L
R
S
--
H
W
Q
-
K
35
SP3
42.80
17%
-7
- C8 -
-
1AIW
-
?
?:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
-
D
------
C
A
--
N
A
-
N
V
Y
P
N
W
V
S
------
K
D
--
W
-
A
-
G
G
-
Q
P
----
T
H
N
----
E
----
A
----
G
Q
S
-----
I
------------
V
Y
K
-
G
N
LY
T
-
A
---
N
W
Y
T
A
S
------
V
---
P
GS
D
-
S
S
--
W
--
T
Q
V
--
G
S
C
-
N
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
P
C
V
I
T
IDGPYNPKYNFYPSHGRGVTGPHG
Q
V
V
I
G
D
F
T
C
TVGATCNQLTCNAPQPE
Y
S
I
LGVDS
40
100.00
100%
0
- C- -
M040
-
A:
[1-63]
P
C
V
I
T
I
D
G
P
Y
N
P
K
Y
N
F
Y
P
S
H
G
R
G
V
T
G
P
H
G
Q
V
V
I
G
D
F
T
C
T
V
G
A
T
C
N
Q
L
T
C
N
A
P
Q
P
E
Y
S
I
L
G
V
D
S
39
100.00
100%
0
- C- -
M039
-
A:
[1-63]
P
C
V
I
T
I
D
G
P
Y
N
P
K
Y
N
F
Y
P
S
H
G
R
G
V
T
G
P
H
G
Q
V
V
I
G
D
F
T
C
T
V
G
A
T
C
N
Q
L
T
C
N
A
P
Q
P
E
Y
S
I
L
G
V
D
S