@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VVC5: (2017-12-23 )
MFFRIFTIFLLILSTNIEAKEKLITGEKIASSYKLLQSMTIPAIYENGMVLTKYANLYKMDNQCVIVSKLDNESNFGGYEDIIYFKNGIMLRSSKQSFFSIFLDDEAKIKSKEIKYGDFLNGKEVQKGLKEDFIQYRKKFNKYTLSKCS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------...----......10.........20----....-..-------...---30..---......40.......-.50.-.......60........70----.........80.....----------...90........100-----------........110-------.....--....-120.-......130.-......140-.-......----------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------M
F
F
----
R
I
F
T
I
F
L
-
L
I
LSTNI
E
A
K
-----
E
KLI-
T
G
-------
E
K
I
---
A
S
S
Y
---
K
L
L
Q
SMTI
P
A
I
YEN
G
-
M
V
L
T
-
K
Y
A
N
L
YKMDN
Q
C
V
I
V
S
KL-----DNESNFGGY
E
D
I
I
Y
FK----------N
G
I
M
L
RSSKQ
S
F
F
S
I
------------
F
LDDEAKIK---------SKEIK--YGDF-L
N
G
K
-
E
V
Q
K
G
L
K
E
D
F
-
I
Q
Y
R
K
K
FNK-Y-TLSKCS----------------------------------------------------------------------------------------------------------
26
Fugue
67.72
22%
0
- C- -
-
1ZHS
2
MVL_MICVR
A:
[1-113]
---------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
Y
K
V
N
I
P
A
-
G
P
L
W
S
N
A
E
A
Q
-----
Q
V
----
G
-------
P
K
I
---
A
A
A
H
---
Q
---------------
G
N
F
T
-
G
Q
W
T
T
V
V
E
S
A
M
S
V
V
E
V
E
L
-----
Q
V
E
------------
N
----------
T
G
I
H
E
F
K
T
D
V
L
A
G
P
L
------------
W
S
N
D
E
A
Q
K
L
---------
G
P
Q
I
A
A
S
Y
G
A
E
-
F
T
G
Q
W
R
T
I
V
E
G
V
M
S
V
-
I
Q
I
K
Y
T
F
---------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
61.29
24%
-52
- C4 -
-
3DIN
-
SECY_THEMA
C:
[224-344]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
I
T
I
F
G
-
I
I
L
V
Q
Q
A
E
R
R
ITIQY
A
R
R
V
-
T
G
-------
R
R
V
YGG
A
S
T
Y
LPI
K
V
N
Q
G
G
V
I
P
I
I
F
A
S
A
-
I
V
S
I
-
P
S
A
I
A
S
I
T
N
N
E
T
-----
L
-----
K
N
L
F
R
A
G
G
F
L
Y
L
L
I
Y
G
-------------
L
L
V
F
F
F
T
Y
F
Y
S
V
------------
V
I
F
D
P
R
E
I
S
---------
E
N
I
R
K
--
Y
G
G
Y
-
I
P
G
-----------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
60.14
21%
10
- C2 -
-
5EC0
3
?
A:
[1-388]
MNIS
R
M
N
V
D
FGNSMY
M
N
L
I
DG
Y
F
F
E
L
P
T
N
V
V
E
I
S
K
E
A
A
E
GKF
T
S
I
V
E
DPADLKD
R
L
L
V
S
T
V
I
DE
T
E
R
Y
F
L
V
G
ELAEPELHNKVESH
I
P
Y
V
T
F
L
A
A
T
A
Y
Y
Q
A
L
KGKREDN
E
V
T
I
E
Y
F
Q
T
M
L
P
I
W
L
L
K
K
L
DK
F
S
E
M
Q
K
R
M
A
S
K
F
L
----
G
T
H
Q
V
K
V
-
L
T
L
G
L
E
K
E
L
T
-----
I
K
V
E
-
D
A
-------
A
C
R
---
I
E
S
--------
E
V
A
R
W
A
I
K
K
N
--
F
D
L
E
-
D
K
D
Y
A
E
Q
F
K
N
Y
D
V
V
F
C
D
L
-----
G
-----
G
G
T
D
D
L
V
L
L
P
----------
A
G
L
K
P
P
K
S
R
D
S
F
V
S
N
T
AP---------
F
L
A
H
L
E
K
L
R
---------
K
E
K
L
L
---
E
H
F
-
D
S
V
R
-
E
L
E
K
F
I
Y
S
N
I
--------
G
K
-
T
-
K
M
E
R
R
D
GNTG
Q
K
F
D
L
T
D
I
I
K
K
S
L
K
E
Y
T
E
I
K
I
A
Q
A
E
N
T
F
PAPKD
K
V
Y
K
Y
L
Y
F
G
G
V
G
E
V
L
E
E
S
I
S
V
V
T
E
E
R
YG
R
D
I
S
E
SN
H
I
V
A
E
DARL
L
N
L
Y
G
L
E
V
L
S
R
A
E
Q
V
K
K
Q
A
N
E
K
E
AQ
28
Fugue
49.41
12%
60
- C1 -
-
2R8R
2
?
A:
[3-211]
--------------------------------------------------------------------------------------------------------------------------------------A
R
G
R
L
K
V
F
L
GAAP
G
V
G
K
T
Y
A
M
L
Q
A
A
H
A
Q
L
R
Q
-----
G
V
R
V
M
A
G
VVETHGR
A
E
T
---
E
A
L
L
---
N
G
L
P
Q
Q
P
L
L
R
T
E
Y
R
G
M
T
L
E
E
M
D
L
D
A
L
L
K
A
A
P
S
L
V
L
V
D
E
L
AHTNA
P
G
S
R
H
T
K
R
W
Q
D
I
Q
E
L
L
A
A
G
I
D
V
Y
T
T
V
N
V
Q
H
L
E
S
L
N
D
Q
V
R
G
I
TGVQVR
E
T
L
P
D
W
V
L
Q
E
A
F
D
L
V
L
IDLP
P
R
E
L
L
E
R
L
R
--
D
G
K
V
-
Y
V
P
E
-
Q
A
R
A
A
I
D
A
F
F
T
Q
T
N
L
T
A
L
R
E
M
A
M
Q
T
A
A
A
Q
----------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
48.18
33%
6
- C6 -
-
5G06
-
RRP4_YEAST
H:
[162-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.08
35%
-69
- C4 -
-
2FLY
1
A:
[1-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
L
D
V
A
-
S
E
F
R
K
K
W
N
K
-
W
-
A
L
S
R
------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
46.49
33%
34
- C6 -
-
5JEA
-
RRP4_YEAST
H:
[119-177]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
46.09
33%
43
* C6 *
-
4OO1
-
RRP4_YEAST
H:
[166-228]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
45.67
9%
-70
- C3 -
-
2M89
-
?
A:
[1-134]
--------------------------------------------------------------------------------------------------------------------------------------------
M
V
N
----
I
N
H
R
I
G
I
----
K
A
S
P
E
K
I
-----
Y
Q
A
L
-
T
T
-------
D
D
G
---
L
K
K
W
------
W
T
N
D
I
S
G
A
G
V
V
G
-
S
T
I
K
-
F
R
F
N
G
G
G
P
D
F
K
V
T
K
L
I
P
N
-----
K
T
---------
V
C
W
Q
H
----------
A
G
N
M
P
E
S
W
M
G
T
E
I
S
F
------------
Q
L
E
T
V
E
N
Q
T
---------
F
V
R
F
T
--
H
S
N
W
-
H
E
T
T
-
D
F
M
A
H
C
N
T
K
W
-
A
V
F
L
L
S
L
K
D
-
A
-
L
E
I
G
K
G
----------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
45.49
33%
47
- C6 -
-
4IFD
-
RRP4_YEAST
H:
[164-228]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
45.44
33%
44
- C6 -
-
5C0W
-
RRP4_YEAST
H:
[164-229]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
43.06
33%
40
- C6 -
-
5K36
-
RRP4_YEAST
H:
[166-230]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
42.90
33%
62
- C6 -
-
5C0X
-
RRP4_YEAST
H:
[164-229]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
----------
E
G
D
L
L
N
A
E
V
Q
S
L
F
Q
---------------
D
G
S
A
S
L
H
---------
T
R
S
L
K
--
Y
G
K
L
-
R
N
G
-----------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
39.83
30%
-90
- C4 -
-
5FW5
-
C:
[1-23]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
F
G
D
------------
F
D
E
H
E
V
D
A
L
---------
A
S
G
I
T
--
F
G
D
F
---------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
39.82
22%
62
- C4 -
-
1RP3
-
?
B:
[2-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
R
I
E
L
S
R
L
I
G
L
L
-----
L
E
T
S
G
T
N
K
I
E
D
K
V
T
L
S
----------
K
-
I
A
Q
E
L
S
K
N
D
V
E
E
K
------------
D
L
E
K
K
V
K
E
L
---------
K
E
K
I
E
--
K
G
E
Y
E
V
S
D
E
-
K
V
V
K
G
L
I
E
F
F
-
T
---------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.54
31%
72
- C4 -
-
3S79
-
CP19A_HUMAN
A:
[172-212]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
R
L
-----
E
E
V
T
N
E
S
G
Y
V
D
V
L
T
L
L
----------
R
R
V
M
L
D
T
S
N
T
L
F
L
R
I
------------
P
L
D
E
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
39.51
31%
78
- C4 -
-
5JKV
-
CP19A_HUMAN
A:
[172-212]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
R
L
-----
E
E
V
T
N
E
S
G
Y
V
D
V
L
T
L
L
----------
R
R
V
M
L
D
T
S
N
T
L
F
L
R
I
------------
P
L
D
E
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.67
31%
80
- C4 -
-
3S7S
-
CP19A_HUMAN
A:
[172-212]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
R
L
-----
E
E
V
T
N
E
S
G
Y
V
D
V
L
T
L
L
----------
R
R
V
M
L
D
T
S
N
T
L
F
L
R
I
------------
P
L
D
E
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
38.58
55%
121
- C4 -
-
4YHS
1
?
A:
[214-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
I
K
---------
V
L
E
P
K
--
Y
G
D
---
T
G
K
-
E
V
Q
A
K
L
V
E
D
A
-
L
Q
--------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
38.08
31%
78
- C4 -
-
5JL7
-
CP19A_HUMAN
A:
[172-212]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
R
L
-----
E
E
V
T
N
E
S
G
Y
V
D
V
L
T
L
L
----------
R
R
V
M
L
D
T
S
N
T
L
F
L
R
I
------------
P
L
D
E
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------