@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_BR29_EuGene_00052161: (2018-03-20 )
DVEPPGASVKPTEAARRRVFKIDGEEFTPLETDCLIRIFKNKKTVHALFVPPGTELDWRLDHNHYAVGIKHNCDIIIGWKPSSWRIEGDKVSSLADGFSVVTTKSTD
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..---.......10.---.----.....-----------.--.20-..-----.--.....-.--30---....--------...-----.--40---.---------...-------.---....50-.----...-.....60.-----.-......70...---------...--.---.80.--.---......------90..------......100-.....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DV---EPPGASVK-
P
---
T
----
E
A
A
RR-----------
R
--
V
F
--
K
I-----D--GEEFT-P--L
E
---
T
D
C
L
--------
I
R
I
-----F--K----N---------K
K
T
-------
V
---
H
A
L
FV--P----PGT-E
L
D
W
R
LDH-----N-
H
Y
A
V
G
IKHN
C
D
---------
I
I
I
--
G
---WKPS--
S
---
W
R
IEG
D
------
K
V
S
S
------LADG
F
S
V
V
T
-TKSTD
26
Fugue
72.12
19%
-124
- C8 -
-
5A6W
4
?
C:
[11-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
A
---
I
----
D
L
S
R
E
-----------
R
--
D
P
--
N
F
-----
F
--
D
H
P
G
I
-
P
--
V
P
----
E
C
F
--------
W
F
M
-----
F
--
K
----
N
---------
N
V
R
-------
Q
---
D
A
G
T
C
--
Y
----
S
S
W
-
K
M
D
M
K
V
G
P
-----
N
-
W
V
H
I
K
S
D
D
N
C
N
---------
L
S
G
--
D
---
F
-
P
P
--
G
---
W
I
V
L
G
K
------
K
R
P
G
------
F
--------------
34
Fugue
63.58
16%
71
- C8 -
-
2KIE
-
OCRL_HUMAN
A:
[1-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
L
G
S
M
E
P
-
P
---
L
----
P
V
G
A
Q
-----------
P
--
L
A
--
T
V
-----
E
--
G
M
E
M
K
G
P
--
L
R
---
E
P
C
A
--------
L
T
L
-----
A
--
Q
RNG-
Q
---------
Y
E
L
-------
I
---
I
Q
L
H
E
--
K
----
E
Q
H
-
V
Q
D
I
I
P
I
N
-----
S
-
H
F
R
C
V
Q
E
A
E
E
T
---------
L
L
I
--
D
---
I
A
S
N
--
S
GCK
I
R
V
Q
G
D
------
W
I
R
E
-----------
R
R
F
E
-
I
P
D
E
E
25
Fugue
61.69
23%
-53
- C8 -
-
2MM2
-
?
A:
[1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
--------
A
N
I
-----
L
--
N
I---
N
---------
E
V
V
-------
I
---
A
T
G
C
V
--
P
----
A
G
G
-
N
L
I
I
R
V
G
S
D----
H
-
S
Y
L
I
R
A
T
V
S
C
G
---------
L
----
S
---
L
N
P
S
--
Q
---
S
F
I
N
G
E
------
S
L
A
S
------
G
G
R
C
-----------
40
SP3
61.16
16%
45
- C13 -
-
1XD5
-
?
A:
[1-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
D
R
---
L
N
S
G
H
Q
L
D
-
T
---
G
----
G
------------------
S
L
--
A
E
-----
G
--
G
Y
L
F
I
----
I
Q
---
N
D
C
N
--------
L
V
L
-----
Y
--
D
----
N
---------
N
R
A
-------
V
---
W
A
----------
S
G
T
-
N
----
G
K
A
-----
S
-
G
C
V
L
K
M
Q
N
D
G
N
L--------
V
I
Y
SG
S
RAI
W
A
S
N
--
T
---
N
R
Q
N
G
N
------
Y
Y
L
I
------
L
Q
R
D
R
N
V
V
I
-
Y
D
N
S
N
43
SP3
59.90
14%
-2
- C8 -
-
1G0D
-
TGM2_PAGMA
A:
[584-684]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
E
L
L
V
Q
V
P
---
G
----
K
A
V
V
W
-----------
E
--
P
L
--
T
A
-----
Y
---
V
S
F
T
N
P
--
L
P
VPL
K
G
G
V
--------
F
T
L
EGAGL
L
--
S
----
A
---------
T
Q
I
-------
H
---
V
N
G
A
V
--
A
----
P
S
G
-
K
V
S
V
K
L
S
F
-----
S
-
P
M
R
T
G
V
R
-------------
K
L
L
----------------
V
D
F
D
S
D
------
R
L
K
D
------
V
K
G
V
T
T
V
V
V
-
H
K
K
--
27
Fugue
58.98
16%
9
- C8 -
-
3DJL
1
AIDB_ECOLI
A:
[3-540]
WQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMG
M
T
---
E
K
Q
G
G
S
D
V
-
M
SNT
T
----
R
A
E
R
L
-----------
E
DG
S
Y
--
R
L
-----
V
--
G
H
K
W
F
-
F
SV
P
Q
---
S
D
A
H
--------
L
V
L
-----
A
--
Q
----
T
---------
A
G
G
-------
L
---
S
C
F
F
V
--
P
RFLP
D
G
Q
-
R
N
A
I
R
L
E
R
-----
L
-
K
D
K
L
G
N
R
S
N
A
S
---------
C
E
V
--
E
---
F
Q
D
A
--
I
---
G
W
L
L
G
L
------
E
G
E
G
------
I
R
L
I
L
K
M
G
G
-
M
T
R
F
D
36
SP3
55.35
14%
3
- C8 -
-
1L9N
-
TGM3_HUMAN
A:
[594-692]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
L
T
L
E
V
L
---
N
----
E
A
R
V
R
-----------
K
--
P
V
--
N
V
-----
Q
---
M
L
F
S
N
P
--
L
D
EPV
R
D
C
V
--------
L
M
V
EGSGL
L
--
L
----
G
---------
N
L
K
-------
I
---
D
V
P
T
L
--
G
----
P
K
E
-
R
S
R
V
R
F
D
I
-----
L
-
P
S
R
S
G
T
K
-------------
Q
L
L
----------------
A
D
F
S
C
N
------
K
F
P
A
------
I
K
A
M
L
S
I
D
V
-
A
E
---
37
SP3
53.88
14%
31
* C8 *
-
1UHT
-
Y4449_ARATH
A:
[1-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
M
-
V
---
T
----
P
S
L
R
L
-----------
V
--
F
V
--
K
G
-----
P
RE
G
D
A
L
--
D
--
Y
K
---
P
G
S
T
--------
I
R
V
-----
G
--
R
----
I
VRGNEIAIK
D
A
G
-------
I
STK
H
L
R
I
E
--
S
----
D
S
G
-
N
--
W
V
I
Q
D
-----
L
-
G
S
S
N
G
T
L
L
N
S
N
---------
A
L
D
--
P
---
E
T
S
V
--
N
---
L
G
-
D
G
D
------
V
I
K
L
------
G
E
Y
T
S
I
L
V
N
-
F
V
S
G
P
44
SP3
52.74
17%
24
- C8 -
-
1VJ2
1
?
A:
[13-126]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MILKRAY
D
V
---
T
P
Q
K
I
S
T
D
-
K
---
V
----
R
G
V
R
K
-----------
R
--
V
L
IG
L
K
-----
D
--
A
P
N
F
V
------------
M
--------
R
L
F
-----
T
VE
P
----
G
---------
G
L
I
DRHSHPW
E
---
H
E
I
F
V
--
L
----
K
G
--
K
L
T
V
L
K
E
Q
-----
G
---
E
E
T
V
E
E
G
-
F
---------
Y
I
F
-------
V
E
P
NE
I
---
H
G
F
R
N
D
------
T
D
S
E
------
V
--
E
F
L
C
L
I
-
P
K
E
G
G
42
SP3
51.39
12%
20
- C8 -
-
1F13
-
F13A_HUMAN
A:
[628-728]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
P
E
I
I
I
K
V
R
---
G
----
T
Q
V
V
G
-----------
S
--
D
M
--
T
V
-----
T
---
V
E
F
T
N
P
--
L
K
ETL
R
N
V
W
--------
V
H
L
-----
D
--
G
PGVT
R
---------
P
M
K
-------
K
---
M
F
R
E
I
--
R
----
P
N
S
-
T
V
Q
W
E
E
V
C
-----
R
-
P
W
V
S
G
H
R
-------------
K
L
I
----------------
A
S
M
S
S
D
------
S
L
R
H
------
V
Y
G
E
L
D
V
Q
I
-
Q
R
R
--
35
SP3
49.35
18%
69
- C8 -
-
1QFH
-
GELA_DICDI
A:
[750-857]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
N
G
E
-
D
---
S
----
S
F
G
-
S
-----------
F
--
T
F
--
T
V
AAKNK
K
--
G
E
V
K
T
-
Y
--
G
G
---
D
K
F
E
--------
V
S
I
-----
T
--
G
----
P
---------
A
E
E
-------
I
---
T
L
D
A
I
DN
Q
----
D
G
T
Y
T
A
A
Y
S
L
V
G
-----
N
G
R
F
S
T
G
V
K
L
N
G
K
---------
H
I
E
--
G
------
S
--
P
---
F
K
Q
V
L
G
------
N
P
G
K
------
K
N
P
E
V
K
S
F
T
-
T
T
R
T
A
2
PsiBlast_PDB
47.73
61%
-337
* C12 *
-
5TW7
-
GUAA_NEIG2
A:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
M
S
H
G
D
------
K
V
S
K
------
L
P
D
G
F
A
V
I
-------
1
PsiBlast_PDB
46.97
29%
-23
- C7 -
-
3NOW
-
?
A:
[510-563]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
A
L
K
-
L
---
A
----
E
A
C
R
R
FLIKPGKDKDI
R
--
R
W
--
A
A
-----
D
--
G
L
A
Y
L
-
T
--
L
D
---
A
E
C
K
--------
E
K
L
-----
I
--
E
----
D
---------
K
A
S
-------
I
---
H
A
L
--------------------------------------------------------------------------------------------------------
38
SP3
45.65
13%
-13
- C8 -
-
1FIQ
2
XDH_BOVIN
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
D
E
-----------
L
--
V
F
--
F
V
-----
N
--
G
K
K
V
V
-
E
--
K
N
-----------------------------------------------------------
A
--
D
----
P
E
T
-
T
L
L
A
Y
L
R
R
-----
K
-
L
G
L
R
G
T
K
L
G
C
G
EGGCGACTV
M
L
S
--
K
---
Y
D
R
L
--
Q
---
D
K
I
I
H
F
------
S
A
N
A
CLAPIC
T
L
H
H
V
A
V
T
T
-
V
E
G
I
G
30
Fugue
44.88
11%
-82
* C13 *
-
1NWB
-
Y1857_AQUAE
A:
[2-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
---
Q
A
Q
Q
F
I
F
K
-
V
---
T
----
D
K
A
V
E
-----------
E
--
I
K
--
K
V
-----
A
--
Q
E
N
N
I
-
E
--------
N
P
I
--------
L
R
I
-----
R
--
V
----
V
---------
P
G
G
-------
C
---
S
G
F
----------
Q
Y
-
A
M
G
F
D
D
T
V
-----
E
-
E
G
D
H
V
F
E
Y
D
G
V
---------
K
V
V
--
I
---
D
P
F
S
--
M
---
P
Y
V
N
G
A
------
E
L
D
Y
------
V
V
D
F
M
G
G
G
F
-
T
I
R
N
P
41
SP3
44.67
9%
12
- C8 -
-
1BF2
-
?
?:
[638-750]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YSGS
Q
L
TWY
Q
P
S
G
A
V
A
D
-
S
---
N
YWNN
T
S
N
Y
A
-----------
I
--
A
Y
--
A
I
-----
N
--
G
P
S
L
--
G
--
D
S
---
N
S
I
Y
--------
V
A
Y
-----
N
--
G
----
W
---------
S
S
S
-------
V
---
T
F
T
L
P
--
A
----
P
P
S
-
G
T
Q
W
Y
R
V
T
-----
D
--
T
C
D
W
N
D
G
A
S
T
---------
F
V
A
--
P
---
G
S
E
T
--
L
---
I
G
G
A
G
T
------
T
Y
G
Q
------
C
G
Q
S
L
L
L
L
I
-
S
K
---
32
Fugue
43.19
15%
60
- C6 -
-
1ZXU
1
LOR15_ARATH
A:
[24-212]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGVVVDPKYCAPYPIDM
A
I
---
V
R
K
D
G
N
F
V
-
I
---
T
----
D
V
N
G
N
-----------
L
--
L
F
--
K
V
-----
K
--
E
P
V
F
G
-
L
--
H
D
---
K
R
V
L
LDGSGTPV
V
T
L
-----
R
--
E
----
D
---------
R
W
Q
-------
V
---
F
R
G
G
S
--
T
----
D
Q
R
-
D
L
L
Y
T
V
K
R
-----
T
-
K
L
D
V
F
L
G
H
N
K
D
-------------------
K
R
C
--
D
---
F
R
V
K
G
S
WLERSC
V
V
Y
A
------
G
E
S
D
A
I
V
A
Q
M
H
R
K
G
K
10
HHSearch
38.31
26%
-27
- C11 -
-
5TUU
-
E2F4_HUMAN
B:
[61-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-----
F
--
A
----
G
----------
D
T
-------
L
---
L
A
I
R
A
--
P
----
S
G
T
-
S
L
E
V
P
I
P
E
GLNGQ
K
-
K
Y
Q
I
H
L
K
S
V
S
G
---------
P
I
------------------------------------------------------
24
HHSearch
37.27
20%
-258
- C7 -
-
5L6M
-
?
G:
[5-24]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
---
T
N
V
A
--------
I
H
L
-----
R
--
D
----
G
---------
D
P
E
-------
V
---
T
T
R
V
-------------------------------------------------------------------------------------------------------
15
HHSearch
35.67
21%
-148
- C9 -
-
2D90
-
A:
[52-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----------
L
--
V
V
--
A
V
-----
N
--
G
K
S
V
E
-
A
--
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------