@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_BR29_EuGene_00113531: (2018-03-14 )
KCNISILKDGKYFTQKQEIAGWTVKFHDLDGNYVGKCKNAHTYACTYVTCEDLAPGYSPGKSKDVVASGNVGSLGHD
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.......20.-----..-....----.30---.........40..---......50..--...------------....60........70......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KC
N
I
S
I
LKDGK
Y
-
F
T
Q
K
QEIA
G
W
-----
T
V
-
K
F
HD----LD----G
N
Y
V
G
KCKNA
H
T
Y
---
A
C
T
Y
V
T
C
-
E
D--LAP------------GYSPGKSK
D
V
V
ASGNVGSLGHD
23
Fugue
75.69
41%
18
- C6 -
-
2LW6
-
?
A:
[19-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SFV
Q
C
N
H
H
L
L
Y
N
G
R
H
-
W
G
T
I
R
K
K
A
G
W
-----
A
V
-
R
F
Y
E
----
E
K
PGQP
K
R
L
V
A
I
C
K
N
A
S
P
V
---
H
C
N
Y
L
K
C
-
T
N
--
L
A
A
------------
G
F
S
A
G
T
S
T
D
V
L
S
S
G
T
V
G
S
----
3
HHSearch
75.69
41%
18
- C6 -
-
2LW6
-
?
A:
[22-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
C
N
H
H
L
L
Y
N
G
R
H
-
W
G
T
I
R
K
K
A
G
W
-----
A
V
-
R
F
Y
E
----
E
K
PGQP
K
R
L
V
A
I
C
K
N
A
S
P
V
---
H
C
N
Y
L
K
C
-
T
N
--
L
A
A
------------
G
F
S
A
G
T
S
T
D
V
L
S
S
G
T
V
G
S
----
1
PsiBlast_PDB
74.03
38%
17
- C6 -
-
2LW6
-
?
A:
[22-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
C
N
H
H
L
L
Y
N
G
R
H
-
W
G
T
I
R
K
K
A
G
W
-----
A
V
-
R
F
Y
E
EKPG
Q
P
----
K
R
L
V
A
I
C
K
N
A
S
P
V
---
H
C
N
Y
L
K
C
-
T
N
--
L
A
A
------------
G
F
S
A
G
T
S
T
D
V
L
S
S
G
T
V
G
S
----
6
HHSearch
46.79
20%
-100
- C6 -
-
3MPG
-
PYRC_BACAN
A:
[4-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
K
N
G
R
Y
-
M
N
E
E
G
K
I
V
A
T
-----
D
L
-
L
V
------
Q
D
----
G
K
I
A
K
V
A
E
N
I
T
A
D
---
N
A
E
V
I
D
V
-
N
G
KL
I
A
P
------------
G
L
--------------------
12
HHSearch
44.09
14%
-124
- C6 -
-
3SFW
-
?
A:
[4-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
I
R
N
G
T
V
-
V
T
A
S
D
-
T
Y
Q
A
-----
D
V
-
L
I
------
D
G
----
E
K
V
V
A
I
G
S
D
L
Q
A
T
---
D
A
E
V
I
D
A
-
T
G
YY
L
L
P
------------
G
G
--------------------
25
Fugue
42.85
30%
77
* C5 *
-
2XTL
-
?
A:
[3-451]
ETKPQVDKNFADKELDYANNKKDKGTVSASVGDVKKYHVGTKILKGSDYKKLIWTDSMTKGLTFNNDIAVTLDGATLDATNYKLVADDQGFRLVLTDKGLEAVAKAAKTKDVEIKITYSATLNGSAVVEVLETNDVKLDYGNNPTIENEPKEGIPVDKKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIERVSGYAPEYVSFVNGVVTIKNNKDSNEPTPINPSEPKVVTYGRKFVKTNKDGKERLAGATFLVKKDGKYLARKSGVATDAEKAAVDSTKSALDAAVKAYNDLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYEWVEDKNAKNVVKLISNDKG
Q
F
E
I
T
G
L
T
E
G
Q
Y
S
L
E
E
T
Q
A
P
T
G
Y
-----
A
-----
K
----
L
S
----
G
D
------------------
V
S
F
-
N
V
--
N
A
T
------------
S
Y
S
K
G
S
A
Q
D
I
E
Y
T
Q
--
G
S
K
T
K
D
13
HHSearch
41.15
34%
10
- C9 -
-
4JZZ
6
?
A:
[144-188]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
P
C
T
N
V
S
T
V
---
Q
C
T
H
-----------------------
G
I
R
P
V
V
S
T
Q
L
L
L
N
G
S
-------
16
HHSearch
40.04
33%
-16
- C9 -
-
3J70
-
?
U:
[235-264]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
G
P
C
T
N
V
S
T
V
---
Q
C
T
H
-----------------------
G
I
R
P
V
V
S
T
Q
L
L
L
N
G
S
-------
9
HHSearch
39.85
34%
-2
- C9 -
-
2QAD
4
?
A:
[75-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
P
C
T
N
V
S
T
V
---
Q
C
T
H
-----------------------
G
I
R
P
V
V
S
T
Q
L
L
L
N
G
S
-------
32
Fugue
39.14
50%
4
- C1 -
-
1BBZ
-
?
F:
[2-11]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
------------
S
Y
S
P
P
P
P
P
--------------
20
HHSearch
37.53
9%
-97
- C6 -
-
2ICS
-
DEACT_ENTFA
A:
[8-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
K
N
G
Q
T
-
V
N
G
M
----
P
V
-----
E
I
-
A
I
------
K
E
----
K
K
I
A
A
V
A
A
T
I
S
G
S
---
A
K
E
T
I
H
L
E
P
G
TY
V
S
A
------------
G
W
--------------------
11
HHSearch
37.53
38%
-1
- C9 -
-
4JM2
2
?
E:
[84-117]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
P
C
K
N
V
S
T
V
---
Q
C
T
H
-----------------------
G
I
R
P
V
V
S
T
Q
L
L
L
N
G
S
-------
28
Fugue
37.27
12%
-23
* C8 *
-
4CU5
-
?
A:
[186-270]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
K
H
T
I
V
Y
D
G
E
V
-
D
K
I
S
A
T
V
V
G
W
GYNDG
K
I
-
L
I
C
D
----
I
K
----
D
Y
V
P
G
Q
T
Q
N
L
Y
V
V
GGG
A
C
E
K
I
S
S
-
I
T
--
K
E
K
------------
F
I
M
I
K
G
N
D
R
F
D
T
L
Y
K
A
L
D
F
I
N
R
18
HHSearch
36.95
34%
15
* C9 *
-
3NGB
-
?
D:
[120-151]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
P
C
K
N
V
S
S
V
---
Q
C
T
H
-----------------------
G
I
K
P
V
V
S
T
Q
L
L
L
N
G
S
-------
27
Fugue
36.90
26%
-31
- C5 -
-
3MHP
-
C:
[1-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
E
Q
P
---
L
S
P
Y
T
A
Y
-
D
D
--
L
K
P
------------
P
S
S
P
S
P
T
K
P
-------------
14
HHSearch
36.53
21%
-123
- C3 -
-
1J9L
1
SURE_THEMA
B:
[68-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
T
P
A
---
D
C
V
K
L
A
Y
-
N
V
--
V
M
D
KRVDLIVSGVNR
G
P
N
M
G
--
M
D
I
L
H
S
G
T
V
S
G
----
4
HHSearch
32.70
37%
2
- C9 -
-
3DNL
-
?
H:
[237-292]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
C
T
N
V
S
T
V
---
Q
C
T
H
-----------------------
G
I
R
P
V
V
S
T
Q
L
L
L
N
G
--------
24
Fugue
30.40
24%
-88
- C3 -
-
2LQ0
-
?
A:
[1-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-----
R
S
-
N
F
H
P
----
L
A
----
A
S
F
I
V
R
C
A
F
E
H
S
R
---
R
F
T
----------------------------------------------
2
PsiBlast_PDB
30.00
44%
44
- C2 -
-
5TE4
2
?
G:
[105-150]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
F
-----
A
I
L
K
C
R
D
----
E
D
----
F
N
G
T
G
P
C
K
N
V
S
T
V
---
Q
C
T
H
---------------------------------------------
22
HHSearch
29.89
25%
-16
- C6 -
-
3BBJ
-
?
A:
[251-266]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
D
L
W
D
----
A
R
----
G
R
L
V
A
Q
S
R
Q
--------------------------------------------------------