@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0151: (2017-12-16 )
MKKSILTTLLFAVLYFLCMGIGVLLGNLFDQTGNMFYAPAFTALVGGSVYMILVAKVPRFGAITTIGLVIALFFLGTKHGAGSFLPGIICGLLADGVAHLGKYKDKTKNFLSFIIFAFSTTGPILLMWIAPKAYMATLLARGKSQEYIDRIMVAPNPGTVLLFIASIVIGALVGALIGQALSKKFAQKI
Atome Classification :
(20 SA)
-----------------------------------------------------.-........10........20........30........40-------------.........50-------......--------..60........-------------------70.......--.--80.-------------------.....------..90.......----.100.......110.......120..----------.....--.130----------------..------.......140..------------------.....150....-..-.160........--170-------..-----------------....------------.--..180.....-..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------M-
K
K
S
I
L
T
T
L
L
F
A
V
L
Y
F
L
C
M
G
I
G
V
L
L
G
N
L
F
D
QTG
N
M
F
Y
A
P
A
--------------
F
T
A
LVGG
S
V
Y
M
-------
I
L
V
AKV--------PRFG
A
I
T
T
I
G
L
V
-------------------
I
A
L
F
F
LGTK--H--GA
G
-------------------
S
F
L
P
G
------
I
I
C
G
L
L
A
D
G
V
A
----
H
L
G
KY
K
D
K
T
K
N
F
L
S
F
I
I
F
AFST-TG
P
----------
I
L
L
M
W
--IA------------------
P
K
------
A
Y
M
A
T
L
L
ARGK
S
------------------
Q
E
Y
I
D
R
I
M
VAPN-P
G
-
T
V
L
-
L
F
I
A
S
I
V
I
--
G
---------
A
L
-----------------
V
G
A
L
------------
I
--
G
Q
A
L
S
K
K
F
A
Q-KI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
78.05
22%
-161
- C4 -
-
5EDL
3
YKOE_BACSU
A:
[12-170]
-----------------------------------------------------------
V
I
S
I
V
F
A
V
V
Y
L
L
F
T
H
F
G
N
V
L
A
G
M
F
---
G
P
I
A
Y
E
P
I
--------------
Y
G
I
W
F
I
V
S
V
I
A
-------
A
Y
M
I
R
K
--------
P
G
A
A
L
V
S
E
I
I
A
A
-------------------
L
V
E
C
L
L
G
N
P
--
S
--
G
P
M
-------------------
V
I
V
I
G
------
I
V
Q
G
L
G
A
E
A
V
F
----
L
A
T
R
W
K
A
Y
S
L
P
V
L
M
L
A
G
M
G
S
S
V
-
A
S
F
----------
I
Y
D
L
F
--
V
S
------------------
G
Y
------
A
--------------------------------------
A
Y
S
-
P
G
-
Y
L
L
I
M
L
V
I
R
L
I
S
--
G
---------
A
L
-----------------
L
A
G
L
------------
L
--
G
K
A
V
S
D
S
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
69.89
17%
-160
- C4 -
-
5EDL
3
YKOE_BACSU
A:
[1-197]
--------------------------------------------------SWK
V
-
K
E
I
V
I
M
S
V
I
S
I
V
F
A
V
V
Y
L
L
F
T
H
F
G
N
V
L
A
G
M
F
G
P
I
A
Y
E
P
I
--------------
Y
G
I
W
F
I
V
S
V
I
A
-------
A
Y
M
I
R
K
--------
P
G
A
A
L
V
S
E
I
I
A
A
-------------------
L
V
E
C
L
L
G
N
P
--
S
--
G
P
M
-------------------
V
I
V
I
G
------
I
V
Q
G
L
G
A
E
A
V
F
----
L
A
T
R
W
K
A
Y
S
---
L
P
V
L
M
L
A
G
M
G
-
S
S
V
----------
A
S
F
I
Y
--
D
L
------------------
F
V
------
S
G
Y
A
A
Y
S
P
G
Y
L
L
------------------
I
M
L
V
I
R
L
I
S
G
A
L
L
A
G
-
L
L
G
-
K
A
V
S
D
S
L
A
Y
T
G
---------
V
L
-----------------
N
G
M
A
------------
L
--
G
K
E
L
K
K
K
R
K
R
-
A
S
E
H
ASL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
66.67
16%
-
- C3 -
-
5DSE
-
TTC7B_HUMAN
A:
[140-843]
V
I
A
E
A
Y
A
T
K
G
L
C
L
ED
V
I
T
C
Y
E
K
A
G
D
I
A
L
L
Y
L
Q
E
I
E
R
VLG
F
F
L
E
T
G
L
Q
R
A
H
V
L
Y
F
-
K
N
G
N
L
T
R
G
V
G
R
F
R
E
L
L
R
A
V
E
T
R
T
T
Q
N
L
R
M
T
I
A
R
Q
L
A
E
I
L
--------------
L
R
G
M
C
E
Q
S
Y
W
N
-------
P
L
E
-----------
D
P
F
C
P
Q
E
N
T
E
E
A
-------------------
L
L
L
L
L
I
S
E
S
--
M
--
A
N
R
-------------------
S
----------
V
V
Y
D
L
L
T
I
A
L
G
----
R
R
G
Q
Y
E
M
L
S
E
C
L
E
R
A
M
K
F
A
F
E
E
------------------
F
--
H
L
------------------
W
Y
------
Q
F
A
L
S
L
M
A
A
G
K
S
------------------
A
R
A
V
K
V
L
K
E
C
I
R
-
L
K
-
P
D
D
-
A
T
I
P
L
L
A
A
--
K
---------
L
C
-----------------
M
G
S
L
------------
H
--
W
L
E
E
A
E
K
F
A
K
-
T
V
VT
S
E
F
K
A
K
G
Y
L
A
L
G
L
T
Y
S
L
Q
A
T
D
ASL
R
G
M
Q
E
V
L
Q
R
K
A
L
L
A
F
Q
R
A
H
S
L
SPTD
H
Q
A
A
F
Y
L
A
L
Q
L
A
I
S
RQ
I
P
E
A
L
G
Y
V
R
Q
A
L
Q
L
QGDD
A
N
S
L
H
L
L
A
L
L
L
S
A
Q
KH
Y
H
D
A
L
N
I
I
D
M
A
L
S
E
Y
PEN
F
I
L
L
F
S
K
V
K
L
Q
S
L
CRG
P
D
E
A
L
L
T
C
K
H
M
L
Q
I
W
K
S
C
YLHP
W
M
T
L
A
Q
I
W
L
H
A
A
E
V
Y
I
G
I
GK
P
A
E
A
T
A
C
T
Q
E
A
A
N
L
FPMS
H
N
V
L
Y
M
R
G
Q
I
A
E
L
R
GS
M
D
E
A
R
R
W
Y
E
E
A
L
A
I
SPTH
V
K
S
M
Q
R
L
A
L
I
L
H
Q
L
GR
Y
S
L
A
E
K
I
L
R
D
A
V
Q
V
NSTA
H
E
V
W
N
G
L
G
E
V
L
Q
A
Q
GN
D
A
A
A
T
E
C
F
L
T
A
L
E
L
E
A
S
SPAVPFTIIPRVL
14
Fugue
59.26
15%
-
- C2 -
-
4UV2
-
CSGG_ECOLI
A:
[18-257]
----------------------------------------------------------
A
Q
S
Y
K
D
L
T
H
L
P
A
P
T
G
K
I
F
V
S
V
Y
N
I
Q
D
E
T
G
Q
F
K
P
Y
P
A
SNFSTAVPQS
A
T
A
M
L
V
T
A
L
K
D
S
R
W
F
-------
I
P
L
E
R
Q
--------
G
L
Q
N
L
L
N
E
R
K
I
I
-------------------
R
A
A
Q
E
N
G
T
V
--
A
--
I
N
N
R
I
P
L
Q
SLTAAN
I
M
V
E
G
S
II
G
Y
E
S
N
------
V
K
S
G
G
V
G
A
R
Y
F
----
G
I
G
A
D
T
Q
Y
Q
L
D
Q
I
A
V
N
L
R
V
V
N
V
S
T
G
E
----------
I
L
S
S
V
--
N
T
------------------
S
K
------
T
I
L
S
Y
E
V
Q
A
G
V
F
------------------
R
F
I
D
Y
V
G
Y
T
S
N
E
-
P
V
M
L
C
L
M
S
A
I
E
T
G
V
I
--
F
---------
L
I
-----------------
N
D
G
I
D
R
GLWDLQNKAE
R
--
Q
N
D
I
L
V
K
Y
R
H
M
S
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
58.28
15%
-129
- C6 -
-
4S1B
2
PGPH_LISM4
A:
[5-220]
--------------------------------------------------------
H
P
L
L
K
K
I
L
M
K
A
--
P
G
T
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
A
N
S
--------------
L
L
V
R
V
G
C
F
Y
H
D
-------
I
G
K
T
L
R
--------
P
P
Y
--------
F
-------------------
V
E
N
Q
I
N
P
H
D
--
R
--
L
T
P
-------------------
E
Q
S
R
D
------
I
I
L
S
H
T
K
D
G
A
E
----
I
L
K
E
N
H
-
M
P
Q
P
I
I
D
I
A
L
Q
H
H
G
T
-
T
L
L
----------
K
Y
F
Y
F
--
K
A
K
ETNPDVKEADYRYSGPK
P
Q
------
T
K
E
I
A
I
I
N
I
S
D
S
------------------
V
E
A
A
V
R
S
S
T
E
P
T
-
M
A
-
K
I
T
-
E
I
I
D
G
I
I
K
--
D
---------
R
F
L
D
GQFTECDIT
I
Q
E
I
K
I
I
R
D
T
------------
L
--
I
A
T
L
N
G
I
Y
H
Q
-
R
I
QY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
51.22
18%
-113
- C4 -
-
5EDL
3
YKOE_BACSU
A:
[4-171]
-------------------------------------------------------
V
K
E
I
V
I
M
S
V
I
S
I
V
F
A
V
V
Y
L
L
F
T
H
F
G
N
--------
V
L
A
G
M
--------------
F
G
P
I
A
Y
E
P
I
Y
G
I
W
F
I
V
S
V
I
A
A
Y
M
I
--------
R
K
P
G
A
A
L
V
S
E
I
I
-------------------
A
A
L
V
E
C
L
L
G
--
N
PS
G
P
M
-------------------
V
I
V
I
G
------
I
V
Q
G
L
G
A
E
A
V
F
----
L
A
T
R
W
K
A
Y
S
L
P
V
L
M
--
L
-
A
G
M
G
-
S
S
V
----------
A
---
S
--
F
I
------------------
Y
D
------
L
F
V
S
G
Y
--------------------------------
A
A
Y
S
-
P
G
-
Y
L
L
-
I
M
L
V
I
R
L
I
--
S
---------
G
A
-----------------
L
L
A
G
------------
L
--
L
G
K
A
V
S
D
S
L
A
-
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
48.76
14%
-71
* C5 *
-
5KO9
-
HMCES_HUMAN
A:
[2-271]
-----------------------------------------------------
C
-
G
R
T
S
C
H
L
P
R
D
V
L
T
R
A
C
A
Y
Q
D
R
R
G
Q
Q
R
L
P
E
W
R
D
P
D
K
Y
C
P
S
--------------
Y
N
K
S
P
Q
S
N
S
P
V
-------
L
L
S
R
L
H
FEKDADSS
E
R
I
I
A
P
M
R
W
G
L
V
P
SWFKESDPSKLQFNTTNC
R
S
D
T
V
M
E
K
R
--
S
--
F
K
V
-------------------
P
L
G
K
G
------
R
R
C
V
V
L
A
D
G
F
Y
----
E
W
Q
R
C
Q
G
T
N
Q
R
Q
P
Y
F
I
Y
F
P
Q
I
E
-
K
V
W
D
N
W
R
L
L
T
M
A
G
I
F
D
C
W
--
E
P
------------------
P
E
G
G
D
V
L
Y
S
Y
T
I
I
T
V
D
S
C
K
G
LSDIHHRMPAILDG
E
E
A
V
S
K
W
L
D
F
G
E
V
S
T
Q
-
E
A
-
L
K
L
-
I
H
P
T
E
N
I
T
--
F
---------
H
A
-----------------
V
S
S
V
------------
V
NN
S
R
N
N
T
P
E
C
L
A
-
P
V
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.66
17%
-82
- C5 -
-
5HGZ
3
NAA60_HUMAN
A:
[2-212]
-----------------------------------------------------
M
T
E
E
E
R
S
S
A
L
S
E
V
S
L
R
L
L
C
H
D
D
I
D
T
V
K
H
L
C
G
D
W
F
P
I
E
Y
P
D
S
--------------
W
Y
R
D
I
T
S
N
K
K
F
-------
F
S
L
A
A
T
--------
Y
R
-
G
A
I
--
V
G
M
I
-------------------
V
A
E
I
K
N
R
T
K
IH
K
--
E
D
G
-------------------
D
I
L
A
S
NFSVD
T
Q
V
A
Y
I
L
S
L
G
V
V
----
K
E
F
R
K
H
G
I
G
S
L
L
L
E
S
L
K
D
H
I
S
T
-
T
A
Q
DHCK
A
-----
I
Y
L
H
V
--
L
T
------------------
T
N
------
N
T
A
I
N
F
Y
E
N
R
D
F
------------------
K
Q
H
H
Y
L
P
Y
Y
Y
S
I
-
R
G
-
V
L
K
-
D
G
F
T
Y
V
L
Y
--
I
NGGHPPWT
I
L
D
-----------------
Y
I
Q
H
------------
L
--
G
S
A
L
A
S
L
S
P
C
-
S
I
PH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
47.14
11%
-142
* C6 *
-
4XU6
5
?
A:
[1-189]
-----------------------------------------------------
M
-
R
---
L
R
I
S
E
A
V
V
L
F
L
L
G
A
V
A
A
L
I
G
D
H
S
H
V
V
T
G
T
T
V
Y
H
T
D
--------------
A
V
P
F
V
W
S
S
P
F
W
-------
F
P
I
L
V
G
--------
A
A
T
A
S
L
A
E
L
R
L
H
-------------------
L
P
A
P
R
D
G
V
T
--
A
--
C
Q
A
-------------------
L
G
G
V
A
------
A
V
V
G
T
Y
V
T
T
A
L
V
HAF
P
V
V
P
V
T
A
L
V
A
A
A
A
A
I
T
W
C
V
L
G
D
-
G
P
G
----------
A
A
A
G
V
--
V
I
------------------
A
V
------
I
G
P
A
V
E
I
A
L
V
Q
L
------------------
G
V
F
A
Y
H
P
D
S
D
G
L
-
F
G
-
V
A
P
-
F
L
A
P
L
Y
F
A
--
F
---------
G
V
-----------------
V
A
A
L
------------
L
--
G
E
L
A
V
A
R
R
P
Q
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.02
13%
-318
- C4 -
-
2NA9
-
A:
[11-34]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
-
M
W
-
V
L
A
-
L
I
V
I
F
L
T
I
--
A
---------
V
L
-----------------
L
A
L
R
------------
F
--
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
34.13
16%
-303
- C4 -
-
4Z7F
1
?
F:
[29-62]
--------------------------------------------------------
K
S
I
A
L
M
G
V
L
I
A
V
V
V
V
F
S
R
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.01
44%
-172
- C4 -
-
2MJZ
-
CAPSD_BPM13
R:
[24-48]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
W
A
M
V
--
V
---------
V
I
-----------------
V
G
A
T
------------
I
--
G
I
K
L
F
K
K
F
T
S
-
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
32.85
15%
-133
* C4 *
-
4NM3
-
B:
[5-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
------------------
P
Q
------
K
F
A
E
E
L
I
H
R
L
E
A
------------------
V
Q
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
32.53
34%
-110
- C4 -
-
2GKS
1
SATC_AQUAE
A:
[223-289]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
Y
D
K
K
K
T
I
L
A
F
L
P
L
A
M
R
M
-
A
G
P
----------
R
E
A
L
W
H
G
I
I
------------------
R
R
------
N
Y
G
A
T
H
F
I
V
G
R
D
------------------
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
32.04
16%
-102
- C4 -
-
3W5A
-
SARCO_RABIT
C:
[1-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
S
T
R
E
L
C
L
N
F
T
V
V
L
I
T
---------------
V
I
L
I
W
--
L
L
------------------
V
R
------
S
Y
Q
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
31.36
38%
-166
- C4 -
-
1IFK
-
CAPSD_BPIF1
A:
[29-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
--
V
---------
L
V
-----------------
V
G
A
T
------------
V
--
G
I
K
L
F
K
K
F
V
S
-
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.84
46%
-132
- C4 -
-
2C0W
-
CAPSD_BPFD
A:
[25-48]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
W
A
M
V
--
V
---------
V
I
-----------------
V
G
A
T
------------
I
--
G
I
K
L
F
K
K
F
T
S
-
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
27.40
16%
-225
- C4 -
-
4Z7F
-
?
B:
[29-50]
--------------------------------------------------------
K
S
I
A
L
M
G
V
L
I
A
V
V
V
V
F
S
R
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
26.53
17%
-51
- C4 -
-
5LNK
-
?
W:
[5-143]
------------------------------------------------------------------------------
G
K
R
L
F
I
I
K
P
S
G
F
Y
D
K
R
--------------
F
L
K
L
L
R
F
Y
I
L
L
---------------------------
T
G
I
P
V
V
-------------------
I
G
I
T
L
I
N
V
F
--
I
--
G
E
A
-------------------
E
-
L
A
E
------
I
P
E
G
Y
V
P
E
-------
H
W
E
Y
F
K
H
P
I
S
R
W
I
A
R
T
F
F
--
D
A
-
P
E
K
----------
N
Y
E
R
T
--
M
A
------------------
I
L
------
Q
I
E
S
E
K
A
E
L
R
L
K
------------------
E
L
E
V
R
R
L
M
R
A
K
G
-
D
G
-
P
W
F
-
Q
Y
--------
P
---------
T
I
-----------------
D
K
A
L
------------
I
--
D
H
S
P
K
A
T
P
D
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
21.35
38%
-58
- C4 -
-
1IFL
-
CAPSD_BPIKE
A:
[31-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
--
T
---------
T
V
-----------------
V
V
A
G
------------
L
--
V
I
R
L
F
K
K
F
S
S
-
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------