@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKQ9: (2017-10-28 )
MEHWLEFMGNHPILFGTLGVLIVLFFIFEGQRNGRKISPQSLGILVKAKNALLIDLRDSKDFREGHISGSRNIPYSQIASHADELKASDRPLVFICNLGQVAGSALQKVAHHDSYRLDGGISNWKAQGLPLVKSKPKA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40......--..50........60..-......70..-----------------......80---------------------------------..-------......90-...-..-.---..---100--....------....-110----.---.......120.......130......------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
H
W
L
E
F
MGNH
P
I
L
F
G
T
L
G
V
L
I
V
L
F
F
I
FEGQRNGRKISPQ
S
L
G
I
L
V
K
--AK
N
A
L
L
I
DLRDSKDFR-EGHISGSRNI-----------------
P
Y
S
Q
I
A
S
H
---------------------------------
A
D
-------
E
LKASDR
P
-
L
V
F
-
I
C-N---
L
G
---
Q
V
---
A
G
S
A
------
L
Q
K
V
-
A
-H----H---D
S
Y
RLDGGISNWKAQGLPLVKSKPKA------------------------------------------------
11
PsiBlast_PDB
77.36
28%
-88
- C1 -
-
3GK5
-
?
A:
[102-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
I
N
A
A
D
L
Y
E
N
I
K
--
A
Y
T
V
L
--
D
V
R
E
P
F
E
L
I
-
F
G
S
I
A
N
S
I
N
I
-----------------
P
I
S
E
L
R
E
K
---------------------------------
W
K
-------
I
L
E
-
R
D
K
K
-
Y
A
V
-
I
C
-
A
---
H
G
---
N
R
---
S
A
A
A
------
V
E
F
L
-
S
-
Q
----
L
GL-
N
I
V
D
V
E
G
G
I
Q
S
W
I
E
E
G
Y
P
V
V
------------------------------------------------------
32
HHSearch
76.92
28%
-116
- C1 -
-
3GK5
-
?
A:
[101-198]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
S
I
N
A
A
D
L
Y
E
N
I
----
K
A
Y
T
V
L
D
V
R
E
P
F
E
L
I
-
F
G
S
I
A
N
S
I
N
I
-----------------
P
I
S
E
L
R
E
K
---------------------------------
W
K
-------
I
L
E
-
R
D
K
K
-
Y
A
V
-
I
C
-
A
---
H
G
---
N
R
S
A
A
A
V
E
F
------
L
S
Q
L
-
G
-
L
----
N
----
I
V
D
V
E
G
G
I
Q
S
W
I
E
E
G
Y
P
V
V
------------------------------------------------------
6
PsiBlast_PDB
76.70
27%
-105
- C1 -
-
1YT8
-
?
A:
[373-474]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
R
A
D
T
I
D
P
T
T
L
A
D
W
L
G
--
E
P
G
T
R
V
L
D
F
T
A
S
A
N
Y
A
-
K
R
H
I
P
G
A
A
W
V
-----------------
L
R
S
Q
L
K
Q
A
---------------------------------
L
E
-------
R
L
G
T
A
E
R
--
Y
V
L
-
T
C
-
G
SS
L
L
A
---
R
F
---
A
V
A
E
------
V
Q
A
L
-
S
-
G
----
K
---
P
V
F
L
L
D
G
G
T
S
A
W
V
A
A
G
L
P
--------------------------------------------------------
19
PsiBlast_PDB
75.78
25%
-55
- C1 -
-
1E0C
1
THTR_AZOVI
A:
[11-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
P
A
D
L
Q
A
R
L
S
--
A
P
E
L
I
L
V
D
L
T
S
A
A
R
Y
A
-
E
G
H
I
P
G
A
R
F
V
D
P
K
R
T
Q
LGQPPAPGLQP
P
R
E
Q
L
E
S
L
---------------------------------
F
G
-------
E
L
--
G
H
R
P
E
A
V
Y
-
V
V
-
Y
---
D
D
---
E
G
---
G
G
W
A
G
R
F
I
W
L
L
D
V
I
-
G
-
Q
----
Q
---
R
Y
H
Y
L
N
G
G
L
T
A
W
L
A
E
D
R
P
L
S
R
E
L
P
--------------------------------------------------
41
HHSearch
73.59
25%
-95
- C1 -
-
1YT8
-
?
A:
[376-478]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
T
I
D
P
T
T
L
A
D
W
L
G
--
E
P
G
T
R
V
L
D
F
T
A
S
A
N
Y
A
-
K
R
H
I
P
G
A
A
W
V
-----------------
L
R
S
Q
L
K
Q
A
---------------------------------
L
E
-------
R
L
G
-
T
A
E
R
-
Y
V
L
-
T
C
-
G
---
S
S
---
L
L
A
R
F
A
V
A
E
------
V
Q
A
L
-
S
-
G
----
K
---
P
V
F
L
L
D
G
G
T
S
A
W
V
A
A
G
L
P
T
E
D
G
----------------------------------------------------
1
PsiBlast_PDB
71.91
29%
-58
- C1 -
-
2MRM
-
?
A:
[6-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
C
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
R
A
G
L
P
V
A
V
N
K
---------------------------------------------------
3
PsiBlast_PDB
69.22
29%
-57
- C1 -
-
5LAO
-
YGAP_ECOLI
A:
[5-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
C
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
K
---------------------------------------------------
34
HHSearch
69.03
23%
-14
- C1 -
-
2HHG
-
?
A:
[18-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
S
I
E
T
L
T
T
A
D
A
I
A
L
H
K
S
G
A
S
D
V
V
I
V
D
I
R
D
P
R
E
I
E
R
D
G
K
I
P
G
S
F
S
C
-----------------
T
R
G
M
L
E
F
W
---------------------------------
I
D
PQSPYAK
P
I
F
Q
E
D
K
K
-
F
V
F
-
Y
C
-
A
---
G
G
---
L
R
S
A
L
A
A
K
T
------
A
Q
D
M
-
G
-
L
----
K
---
P
V
A
H
I
E
G
G
F
G
A
W
R
D
A
G
G
P
I
E
------------------------------------------------------
44
HHSearch
66.45
25%
-107
* C1 *
-
3TP9
-
?
A:
[374-473]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
V
S
P
D
E
V
R
G
A
L
A
--
Q
Q
G
L
W
L
L
D
V
R
N
V
D
E
W
A
-
G
G
H
L
P
Q
A
H
H
I
-----------------
P
L
S
K
L
A
A
H
---------------------------------
I
H
-------
D
V
P
-
R
D
G
S
-
V
C
V
-
Y
C
-
R
---
T
G
---
G
R
S
A
I
A
A
S
L
------
L
R
A
H
-
G
-
V
----
G
---
D
V
R
N
M
V
G
G
Y
E
A
W
R
G
K
G
F
P
V
E
------------------------------------------------------
26
Fugue
66.21
27%
-51
- C1 -
-
5HBQ
-
YGAP_ECOLI
A:
[22-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
S
P
H
D
A
Q
E
L
I
A
---
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
D
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
----------------------------------------------------
10
PsiBlast_PDB
65.47
26%
-52
- C1 -
-
5HBQ
-
YGAP_ECOLI
A:
[22-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
D
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
----------------------------------------------------
31
HHSearch
65.33
29%
-35
- C1 -
-
5LAM
-
YGAP_ECOLI
A:
[3-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
S
P
H
D
A
Q
E
L
I
A
---
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
C
-
Q
---
A
G
---
K
R
TSN
N
A
D
K
------
L
A
A
I
-
A
A
P
----
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
K
---------------------------------------------------
45
HHSearch
64.94
23%
-51
- C1 -
-
3G5J
3
?
A:
[5-133]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
I
K
I
E
K
A
L
K
--
L
D
K
V
I
F
V
D
V
R
T
E
G
E
Y
E
-
E
D
H
I
L
N
A
I
N
M
-----------------
P
L
F
K
N
N
E
H
N
E
V
G
T
I
Y
K
M
QG
K
H
E
A
I
Q
K
G
F
D
Y
VSYK
L
K
D
I
Y
L
Q
A
A
-------
E
L
A
L
N
Y
D
N
-
I
V
I
-
Y
C
A
R
---
G
G
---
M
R
S
G
S
I
V
N
L
------
L
S
S
L
-
G
-
V
--------
N
V
Y
Q
L
E
G
G
Y
K
A
Y
R
N
F
V
L
E
--------------------------------------------------------
46
HHSearch
64.65
23%
-57
- C1 -
-
3G5J
2
?
B:
[5-133]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
I
K
I
E
K
A
L
K
--
L
D
K
V
I
F
V
D
V
R
T
E
G
E
Y
E
-
E
D
H
I
L
N
A
I
N
M
-----------------
P
L
F
K
N
N
E
H
NEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQ
A
A
-------
E
L
A
L
N
Y
D
N
-
I
V
I
-
Y
C
A
R
---
G
G
---
M
R
SGS
I
V
N
L
------
L
S
S
L
-
G
-
V
--------
N
V
Y
Q
L
E
G
G
Y
K
A
Y
R
N
F
V
L
E
--------------------------------------------------------
2
PsiBlast_PDB
64.31
29%
-42
- C1 -
-
5LAM
-
YGAP_ECOLI
A:
[5-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
C
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
K
---------------------------------------------------
22
Fugue
64.19
23%
38
- C1 -
-
1YT8
1
?
A:
[6-530]
I
A
V
R
T
F
H
D
I
R
A
A
L
L
A
R
R
E
L
A
L
L
DVRE
E
D
P
F
A
Q
AHPLF
A
A
N
L
P
LSRLELEIHARVPRRDTP
I
T
V
Y
D
DGEG
L
A
P
V
A
A
Q
R
L
H
D
L
GYS
D
V
A
L
LDGG
L
S
G
W
R
N
A
G
G
E
L
F
R
D
VN
V
P
S
K
A
F
G
E
L
V
E
A
E
RHT
P
S
L
A
A
E
E
V
Q
A
L
L
D
A
RAE
A
V
I
L
D
ARR
F
D
E
Y
Q
T
MSIPG
G
I
S
V
P
GAELVLRVAELAPDPR
T
R
V
I
V
N
C
AGR
T
R
S
I
I
G
T
Q
S
L
L
N
A
GIPNP
V
A
A
LRNG
T
I
G
W
T
L
A
G
Q
Q
L
E
H
G
Q
T
R
R
F
G
AIS
Q
D
T
R
K
A
A
A
Q
R
A
R
A
V
A
D
R
A
G
V
E
R
L
D
L
A
G
L
A
Q
W
Q
D
EHD
R
T
T
Y
L
L
D
VRT
P
E
E
Y
E
A
GHLPG
S
R
S
T
P
G
G
Q
L
V
Q
ETDHVASVRG
A
R
L
V
L
V
D
DDGV
R
A
N
M
S
A
S
W
L
A
Q
M
GWQ
V
A
V
L
D
GL
S
E
A
D
F
S
E
R
G
A
W
S
A
P
L
P
R
-------------
Q
P
R
A
D
T
I
D
P
T
T
L
A
D
W
L
G
--
E
P
G
T
R
V
L
D
F
T
A
S
A
N
Y
A
-
K
R
H
I
P
G
A
A
W
V
-----------------
L
R
S
Q
L
K
Q
A
---------------------------------
L
E
-------
R
L
G
-
T
A
E
R
-
Y
V
L
-
T
C
-
G
---
S
S
---
L
L
---
A
R
F
A
------
V
A
E
V
-
Q
-
A
----
L
S
G
K
P
V
F
L
L
D
G
G
T
S
A
W
V
A
A
G
L
P
T
E
D
G
E
S
L
L
ASPRIDRYRRPYEGTDNP
R
E
A
M
Q
G
Y
L
D
W
E
F
G
L
V
E
Q
L
G
R
D
GTHG
F
F
V
I
E
5
PsiBlast_PDB
63.76
29%
-61
- C1 -
-
2MOL
-
YGAP_ECOLI
A:
[5-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
C
-
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
K
---------------------------------------------------
7
PsiBlast_PDB
63.68
24%
-128
- C1 -
-
3TP9
-
?
A:
[376-472]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
P
D
E
V
R
G
A
L
A
--
Q
Q
G
L
W
L
L
D
V
R
N
V
D
E
W
A
-
G
G
H
L
P
Q
A
H
H
I
-----------------
P
L
S
K
L
A
A
H
---------------------------------
I
H
-------
D
V
-
P
R
D
G
S
-
V
C
V
-
Y
C
-
R
---
T
G
G
R
S
A
I
---
A
A
S
L
------
L
R
A
H
-
G
-
V
----
G
---
D
V
R
N
M
V
G
G
Y
E
A
W
R
G
K
G
F
P
V
-------------------------------------------------------
35
HHSearch
62.90
27%
-52
- C1 -
-
5HBP
-
YGAP_ECOLI
A:
[22-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
S
P
H
D
A
Q
E
L
I
A
---
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
-
H
--
Q
---
A
G
---
K
R
T
S
N
N
A
D
K
------
L
A
A
I
A
A
-
P
----
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
----------------------------------------------------
9
PsiBlast_PDB
62.03
27%
-31
- C1 -
-
5HPA
-
YGAP_ECOLI
A:
[22-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
S
P
H
D
A
Q
E
L
I
---
A
R
G
A
K
L
I
D
I
R
D
A
D
E
Y
L
-
R
E
H
I
P
E
A
D
L
A
-----------------
P
L
S
V
L
E
Q
S
---------------------------------
G
L
-------
P
A
K
L
R
H
E
Q
-
I
I
F
H---
Q
---
A
G
---
K
R
---
T
S
N
N
------
A
D
K
L
-
A
-
A
I
A
AP
A
---
E
I
F
L
L
E
D
G
I
D
G
W
K
K
A
G
L
P
V
A
V
N
----------------------------------------------------