@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKR2: (2017-10-28 )
MVRINKMNGKHVDIYIGKLNDFLNRKQHDFPDFRTFNEYKKQQIQLIKNKLIAQKLEIAPTDLVFAKHEYGKPYLLDHALHFNHSHSQQYYALALSERVKDIGIDVEELDRKVRLDSLAQHAFHPDEYATWQSLEQDREYWFKVWTTKEAVLKASGLGIRLDLNTLNTQAPPTNHGGLCSHELIGTFAYQNFVLGNMILTVAWRSEQSCRGFQFPSIQIHSLDR
Atome Classification :
(20 SA)
------------.........10.....-...20........------30-.........40...--.....50........--60...--.....70......-.-.------80--........90.......--.-100----.......----110-----..-----.....120--------------------.........130...---.--..---.--.140.......150....--...160---.........170.....---------..180.....----..190..-....-.200.----.....-----------.210-----.......220..------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------
M
V
R
I
NKMNG
K
H
V
D
I
Y
I
-
G
K
L
N
D
F
L
N
R
K
QHD------F--PD
F
R
T
F
N
E
Y
K
K
Q
Q
I
--
Q
L
I
K
N
K
L
I
A
Q
K
LEIA--PT
D
L
V
--
F
A
KHEYGKP
Y
L
L
D
-
H
-
A
------
L
H--FNHSHS
Q
Q
Y
Y
A
L
A
L
S
E
R
--
V
-
K
D
I----GI
D
V
E
E
L
----
D
R
K
-----
V
R
-----
L
D
S
L
A
Q
----------------------HAF
H
P
D
E
Y
A
T
W
-
Q
S
L
---
E
--
Q
D
---
R
--
E
Y
W
F
K
V
WT
T
K
E
A
V
LKASG--
L
G
I
R
-----
L
D
L
NTLNTQAPPTNHGG---------
L
C
S
H
E
L
I
G
T
F
----
A
Y
Q
N
F
VL-G
N
M
I
-
L
T
V
A
W----RSEQS-----------CRGF-----QFP
S
I
Q
I
H
SLDR------------------------
50
Fugue
68.91
19%
17
- C4 -
-
2BYD
-
ADPPT_HUMAN
A:
[18-318]
LYF
Q
G
H
M
E
G
V
R
W
A
F
S
C
G
T
W
L
P
S
--
R
A
E
W
-
L
L
A
V
R
S
I
Q
P
E
E
K
E
------
R
--
I
G
Q
F
V
F
A
R
D
A
K
A
A
M
A
G
R
L
M
I
R
K
L
V
A
E
K
L
N
I
P
--
W
N
H
I
R
--
L
Q
R
T
A
K
G
K
P
V
L
A
K
-
D
-
S
SNPYPN
F
N
--
F
N
I
S
H
Q
G
D
Y
A
V
L
A
A
E
P
E
----
L
Q
V
----
G
I
D
I
M
K
T
----
S
F
P
GRGS
I
P
E
-----
F
F
H
I
M
K
----------------------
R
K
F
T
N
K
E
W
E
T
I
-
R
S
F
KD
E
W
--
T
Q
---
L
--
D
M
F
Y
R
N
W
A
L
K
E
S
F
I
K
A
I
G
--
V
G
L
G
-----
F
E
L
Q
R
L
E
F
D
L
S
P
L
N
L
D
I
G
Q
V
Y
K
E
T
R
L
F
L
D
G
E
E
E
K
E
W
----
A
F
E
E
S
K
I
D
E
H
H
F
-
V
A
V
A
L
----
R
K
Q
R
Q
-----------
F
T
I
L
-----
N
F
N
D
L
M
S
S
A
V
P
M
TPEDPSFWDCFCFTEEIPIRNGTK
3
PsiBlast_PDB
64.46
25%
-26
- C4 -
-
2BYD
-
ADPPT_HUMAN
A:
[74-234]
-------------------------------------------------------------------
R
L
M
I
R
K
L
V
A
E
K
L
N
I
P
--
W
N
H
I
R
--
L
Q
R
T
A
K
G
K
P
V
L
A
K
-
D
-
S
SNPYPN
F
N
--
F
N
I
S
H
Q
G
D
Y
A
V
L
A
A
E
P
E
--
L
-
Q
-
V
----
G
I
D
I
M
K
T
----
S
F
P
-----
G
R
GS
I
P
E
F
F
H
I
M
K
----------------------
R
K
F
T
N
K
E
W
E
T
I
-
R
S
F
---
K
--
D
E
W
T
Q
L
--
D
M
F
Y
R
N
W
A
L
K
E
S
F
I
K
A
I
G
--
V
G
L
G
-----
F
E
L
Q
R
L
E
F
D
L
S
P
L
N
-------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
64.20
25%
-22
- C4 -
-
2CG5
1
ADPPT_HUMAN
A:
[74-232]
-------------------------------------------------------------------
R
L
M
I
R
K
L
V
A
E
K
L
N
I
P
--
W
N
H
I
R
--
L
Q
R
T
A
K
G
K
P
V
L
A
K
-
D
-
S
SNPYPN
F
N
--
F
N
I
S
H
Q
G
D
Y
A
V
L
A
A
E
P
E
--
L
-
Q
-
V
----
G
I
D
I
M
K
T
----
S
F
P
-----
G
R
GS
I
P
E
F
F
H
I
M
K
----------------------
R
K
F
T
N
K
E
W
E
T
I
-
R
S
F
---
K
--
D
E
W
T
Q
L
--
D
M
F
Y
R
N
W
A
L
K
E
S
F
I
K
A
I
G
--
V
G
L
G
-----
F
E
L
Q
R
L
E
F
D
L
S
P
L
N
-------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.10
25%
13
- C4 -
-
2C43
1
ADPPT_HUMAN
A:
[74-232]
-------------------------------------------------------------------
R
L
M
I
R
K
L
V
A
E
K
L
N
I
P
--
W
N
H
I
R
--
L
Q
R
T
A
K
G
K
P
V
L
A
K
-
D
--NPYP
N
-
F
N
--
F
N
I
S
H
Q
G
D
Y
A
V
L
A
A
E
P
E
--
L
-
Q
-
V
----
G
I
D
I
M
K
T
----
S
F
P
-----
G
R
GS
I
P
E
F
F
H
I
M
K
----------------------
R
K
F
T
N
K
E
W
E
T
I
-
R
S
F
---
K
--
D
E
W
T
Q
L
--
D
M
F
Y
R
N
W
A
L
K
E
S
F
I
K
A
I
G
--
V
G
L
G
-----
F
E
L
Q
R
L
E
F
D
L
S
P
L
N
-------------------------------------------------------------------------------------------------------------
51
Fugue
58.29
17%
52
- C4 -
-
1QR0
1
SFP_BACSU
A:
[1-228]
-----------M
K
I
Y
G
I
Y
M
D
R
P
L
S
Q
E
E
N
-
E
R
F
M
T
F
I
S
P
E
K
R
E
------
K
--
C
R
R
F
Y
H
K
E
D
A
H
R
T
L
L
G
D
V
L
V
R
S
V
I
S
R
Q
Y
Q
L
D
--
K
S
D
I
R
--
F
S
T
Q
E
Y
G
K
P
C
I
P
D
-
L
-
P
D-----
A
H
--
F
N
I
S
H
S
G
R
W
V
I
G
A
F
D
S
-----
Q
P
I
----
G
I
D
I
E
K
T
----
K
P
I
-----
S
-------
L
E
I
A
K
----------------------
R
F
F
S
K
T
E
Y
S
D
L
-
L
A
K
DK-
D
--
E
Q
---
T
--
D
Y
F
Y
H
L
W
S
M
K
E
S
F
I
K
Q
E
G
--
K
G
L
S
-----
L
P
L
D
S
F
S
V
R
L
H
Q
D
G
Q
V
S
---------
I
E
L
P
D
S
H
S
P
C
----
Y
I
K
T
Y
E
V
D
P
G
Y
K
-
M
A
V
C
A
----
A
H
P
D
F
-----------
P
E
D
I
-----
T
M
V
S
Y
E
E
L
L
R
A
A
A-----------------------
1
PsiBlast_PDB
57.39
28%
14
- C4 -
-
4MRT
2
SFP_BACSU
A:
[49-171]
--------------------------------------------------------------------
V
L
V
R
S
V
I
S
R
Q
Y
Q
L
D
--
K
S
D
I
R
--
F
S
T
Q
E
Y
G
K
P
C
I
P
D
-
L
-
P
D-----
A
H
--
F
N
I
S
H
S
G
R
W
V
I
G
A
F
D
S
-----
Q
P
I
----
G
I
D
I
E
K
T
-----
K
P
-----
I
S
-----
L
E
-
I
A
K
----------------------
R
F
F
S
K
T
E
Y
S
D
L
-
L
A
K
---
D
--
K
D
---
E
Q
T
D
Y
F
Y
H
L
W
S
M
K
E
S
F
I
K
Q
E
G
--
K
G
L
S
-----
L
P
L
D
S
F
S
V
R
------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.62
28%
11
- C4 -
-
1QR0
1
SFP_BACSU
A:
[49-171]
--------------------------------------------------------------------
V
L
V
R
S
V
I
S
R
Q
Y
Q
L
D
--
K
S
D
I
R
--
F
S
T
Q
E
Y
G
K
P
C
I
P
D
-
L
-
P
D-----
A
H
--
F
N
I
S
H
S
G
R
W
V
I
G
A
F
D
S
-----
Q
P
I
----
G
I
D
I
E
K
T
-----
K
P
-----
I
S
-----
L
E
-
I
A
K
----------------------
R
F
F
S
K
T
E
Y
S
D
L
-
L
A
K
---
D
--
K
D
---
E
Q
T
D
Y
F
Y
H
L
W
S
M
K
E
S
F
I
K
Q
E
G
--
K
G
L
S
-----
L
P
L
D
S
F
S
V
R
------------------------------------------------------------------------------------------------------------------
23
HHSearch
56.51
19%
34
- C4 -
-
1QR0
1
SFP_BACSU
A:
[19-210]
----------------------------------
R
F
M
T
F
I
S
P
E
K
R
E
K
C
R
--
R
F
Y
H
K
E
D
A
H
R
T
L
L
G
--
D
V
L
V
R
S
V
I
S
R
Q
Y
Q
L
D
--
K
S
D
I
R
--
F
S
T
Q
E
Y
G
K
P
C
I
P
D
L
P
-
D
------
A
H
--
F
N
I
S
H
S
G
R
W
V
I
G
A
F
D
S
-----
Q
P
I
----
G
I
D
I
E
K
T
----
K
P
I
-----
S
-------
L
E
I
A
K
----------------------
R
F
F
S
K
T
E
Y
S
D
L
-
L
A
K
---
D
KD
E
Q
---
T
--
D
Y
F
Y
H
L
W
S
M
K
E
S
F
I
K
Q
E
G
--
K
G
L
S
-----
L
P
L
D
S
F
S
V
R
L
H
Q
D
G
Q
V
S
---------
I
E
L
P
D
S
H
S
P
C
----
Y
I
K
T
Y
E
V
-
D
P
G
Y
K
M
A
V
C
A
----
A
H
P
D
---------------------------------------------------------
56
Fugue
51.71
17%
3
- C1 -
-
5DWB
2
T2A1_THAGE
A:
[1-278]
-----------M
R
L
D
L
D
F
G
R
G
L
V
A
H
V
M
L
-
D
N
V
S
E
E
Q
Y
Q
Q
I
S
D
------
Y
F
V
P
L
V
N
K
P
K
L
K
S
R
D
A
I
--
G
Q
A
F
V
M
A
T
E
V
C
P
D
A
N
--
P
S
D
L
W
H
H
V
L
Y
R
I
Y
I
R
E
K
I
G
T
-
D
-
P
------
S
Q
--
S
W
V
R
T
S
G
E
A
F
E
V
A
L
V
E
R
--
Y
-
N
P
V
L
A
R
H
G
I
R
L
T
A
L
----
F
K
G
-----
Q
K
-----
G
L
A
L
T
R
M
GVADRVGSRKVD
V
M
I
E
K
Q
GGG
R
S
P
D
A
E
G
F
G
V
V
-
G
G
I
---
H
--
A
K
---
V
--
S
L
A
E
R
V
S
D
D
I
P
A
S
R
I
M
M
G
--
E
G
L
L
-----
S
V
L
S
T
L
D
V
K
S
F
P
P
P
H
G
D
---------
L
V
N
R
G
E
L
G
T
P
DRPS
D
K
R
N
Y
I
E
-
G
H
G
D
-
F
S
A
C
F
S
YNL
R
T
S
P
S
NATTPSG
R
H
I
Y
V
S
G
F
SGQDD
E
F
T
D
Y
L
V
A
Q
L
A
-------------------------
54
Fugue
47.03
13%
-93
- C3 -
-
1QBA
-
?
?:
[174-310]
------------------------------------------------------------
S
N
A
D
L
--
Q
T
L
P
A
G
A
L
R
G
K
I
V
P
T
--
P
M
Q
V
K
--
V
H
A
Q
D
A
D
----
L
R
-
K
-
G
------
V
A
--
L
D
L
S
T
L
V
K
P
A
A
D
V
V
S
Q
R
--
F
-
A
L
L
----
G
V
P
V
Q
T
N
----
G
Y
P
-----
I
K
-----
T
D
I
Q
P
G
----------------------
K
F
K
G
---------
A
M
---
A
--
V
S
---
G
--
A
Y
E
L
K
I
G
K
K
E
A
Q
V
I
G
F
D
Q
--
A
G
V
F
-----
Y
G
L
Q
S
I
L
S
L
V
P
S
D
G
S
G
K
---------
I
A
T
L
D
A
S
D
A
P
----
R
----------------------------------------------------------------------------------
27
HHSearch
45.62
17%
-42
- C4 -
-
4U89
3
?
A:
[64-202]
-----------------------------------------------------
S
V
A
K
R
R
N
E
F
I
T
V
--
R
H
C
A
R
I
A
L
D
Q
L
-
G
V
P
----
P
A
P
--
I
L
K
G
D
K
G
E
P
C
W
P
D
---
G
------
M
V
--
G
S
L
T
H
C
A
G
Y
R
G
A
V
V
G
R
R
DA
V
-
R
S
V
----
G
I
D
A
E
P
H
----
D
V
L
-----
P
-------
N
G
V
L
D
----------------------
A
I
S
L
P
A
E
R
A
D
M
-
P
R
T
---
M
P-
A
A
---
L
--
H
W
D
R
I
L
F
C
A
K
E
A
T
Y
K
A
W
F
P
L
T
K
R
W
-----
L
G
F
E
D
A
H
I
T
F
E
T
---------------------------------------------------------------------------------------------------------------
29
HHSearch
45.59
18%
-43
- C4 -
-
4QVH
3
MALE_ECOLI
A:
[415-553]
-----------------------------------------------------
S
V
A
K
R
R
N
E
F
I
T
V
--
R
H
C
A
R
I
A
L
D
Q
L
-
G
V
P
--
P
--
A
P
--
I
L
K
G
D
K
G
E
P
C
W
P
D
---
G
------
M
V
--
G
S
L
T
H
C
A
G
Y
R
G
A
V
V
G
R
R
DA
V
-
R
S
V
----
G
I
D
A
E
P
H
----
D
V
L
-----
P
-------
N
G
V
L
D
----------------------
A
I
S
L
P
A
E
R
A
D
M
-
P
R
T
---
M
P-
A
A
---
L
--
H
W
D
R
I
L
F
C
A
K
E
A
T
Y
K
A
W
F
P
L
T
K
R
W
-----
L
G
F
E
D
A
H
I
T
F
E
T
---------------------------------------------------------------------------------------------------------------
26
HHSearch
44.69
17%
-41
- C4 -
-
4QJK
1
?
A:
[44-182]
-----------------------------------------------------
S
V
A
K
R
R
N
E
F
I
T
V
--
R
H
C
A
R
I
A
L
D
Q
L
-
G
V
P
----
P
A
P
--
I
L
K
G
D
K
G
E
P
C
W
P
D
---
G
------
M
V
--
G
S
L
T
H
C
A
G
Y
R
G
A
V
V
G
R
R
DA
V
-
R
S
V
----
G
I
D
A
E
P
H
----
D
V
L
-----
P
-------
N
G
V
L
D
----------------------
A
I
S
L
P
A
E
R
A
D
M
-
P
R
T
---
M
P-
A
A
---
L
--
H
W
D
R
I
L
F
C
A
K
E
A
T
Y
K
A
W
F
P
L
T
K
R
W
-----
L
G
F
E
D
A
H
I
T
F
E
T
---------------------------------------------------------------------------------------------------------------
28
HHSearch
44.49
15%
-35
- C4 -
-
4QJL
1
?
A:
[45-181]
------------------------------------------------------
V
A
K
R
R
N
E
F
I
T
V
--
R
H
C
A
R
V
A
L
G
D
L
-
G
V
P
----
P
V
P
--
I
L
K
G
D
K
G
Q
P
C
W
P
D
---
G
------
V
V
--
G
S
L
T
H
C
S
G
Y
R
G
A
V
V
G
R
S
AA
V
-
R
S
V
----
G
I
D
A
E
P
H
----
D
V
L
-----
S
-------
N
G
V
L
D
----------------------
A
I
S
L
P
E
E
R
D
E
I
-
P
S
A
---
M
P-
D
G
---
L
--
H
W
D
R
I
L
F
C
A
K
E
A
T
Y
K
V
W
F
P
L
T
N
R
W
-----
L
G
F
E
D
A
H
I
T
F
E
----------------------------------------------------------------------------------------------------------------
53
Fugue
44.08
15%
18
- C4 -
-
4QJK
1
?
A:
[3-230]
--------VGTL
V
A
S
V
L
P
A
T
V
F
E
D
L
A
Y
A
-
E
L
Y
S
D
P
P
G
L
T
P
L
P
------
E
--
E
A
P
L
I
A
R
S
V
A
K
R
R
N
--
E
F
I
T
V
R
H
C
A
R
I
A
L
D
Q
L
G
V
P
P
A
P
--
I
L
K
G
D
K
G
E
P
C
W
P
D
-
G
M
V
------
G
S
--
L
T
H
C
A
G
Y
R
G
A
V
V
G
R
R
D
A
--
V
-
R
S
V
----
G
I
D
A
E
P
------
H
D
-----
V
L
-----
P
N
G
V
L
D
----------------------
A
I
S
L
P
A
E
R
A
-
D
M
P
R
T
M--
P
--
A
A
---
L
--
H
W
D
R
I
L
F
C
A
K
E
A
T
Y
K
A
W
F
--
P
L
T
K
R
W
L
G
F
E
D
A
H
I
T
F
E
T
D
S
T
G
W
T
G
R
---------
F
V
S
R
I
L
I
D
G
S
----
T
L
S
G
P
P
L
-
T
T
L
R
-
G
R
W
S
V
----
E
----------------
R
G
L
-----
V
L
T
A
I
V
L
L
E
H
--------------------------
59
Fugue
41.97
17%
-2
- C2 -
-
5C50
3
ATG13_HUMAN
B:
[5-189]
---------S
D
L
D
K
F
I
K
F
F
A
L
K
T
V
Q
V
I
V
Q
A
R
L
G
E
K
I
C
T
R
S
S
S
------
S
--
P
T
G
S
D
W
F
N
L
A
I
K
D
I
--
P
E
V
T
H
E
A
K
K
A
L
A
G
Q
L
--
P
----------
A
V
G
R
S
M
C
V
E
-
I
-
S
------
L
K
T
S
E
G
D
S
M
E
L
E
I
W
C
L
E
M
N
E
K
--
C
D
K
E
I
----
K
V
S
Y
T
V
Y
----
N
R
L
-----
S
L
-----
L
L
K
S
L
L
----------------------
A
I
T
R
V
T
P
-
A
Y
R
-
L
S
R
---
K
--
Q
G
---
H
--
E
Y
V
I
L
Y
R
I
Y
F
G
E
V
-
Q
L
S
G
--
L
G
E
G
-----
F
Q
T
V
R
V
G
T
V
G
T
P
V
-----------------------------------
G
T
I
T
-
L
S
C
A
Y
----
R
I
N
L
A
-----------
F
--------------------------------------------
7
PsiBlast_PDB
40.64
35%
55
- C4 -
-
1FTF
-
ACPS_STRPN
A:
[1008-1084]
--------------------------------------------------------------------------------------------------------------------------------------------------
G
I
D
I
E
E
L
A
S
I
E
S
A
V
-----
T
R
-----
H
E
G
F
A
K
----------------------
R
V
L
T
A
L
E
M
E
R
F
-
T
S
L
---
K
--
G
R
---
R
Q
I
E
Y
L
A
G
R
W
S
A
K
E
A
F
S
K
A
M
G
--
T
G
I
S
KLGF-
Q
D
L
E
V
L
N
N
E
------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
40.34
33%
-125
- C5 -
-
1QQT
-
SYM_ECOLI
A:
[349-384]
-------------------------------------------------------------------------------------------------------------------
H
--
F
D
A
D
S
L
R
Y
Y
Y
T
A
K
L
S
S
R
--
I
-
D
D
I
----
D
L
N
L
E
D
F
----
V
Q
R
-----
V
N
-----
A
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.21
35%
47
- C4 -
-
1FTE
-
ACPS_STRPN
A:
[8-84]
--------------------------------------------------------------------------------------------------------------------------------------------------
G
I
D
I
E
E
L
A
S
I
E
S
A
V
-----
T
R
-----
H
E
G
F
A
K
----------------------
R
V
L
T
A
L
E
M
E
R
F
-
T
S
L
---
K
--
G
R
---
R
Q
I
E
Y
L
A
G
R
W
S
A
K
E
A
F
S
K
A
M
G
--
T
G
I
S
KLGF-
Q
D
L
E
V
L
N
N
E
------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
40.02
33%
-140
- C5 -
-
1PFU
-
SYM_ECOLI
A:
[349-384]
-------------------------------------------------------------------------------------------------------------------
H
--
F
D
A
D
S
L
R
Y
Y
Y
T
A
K
L
S
S
R
--
I
-
D
D
I
----
D
L
N
L
E
D
F
----
V
Q
R
-----
V
N
-----
A
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------