@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLV2: (2017-11-04 )
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQPIRWYQNIPVISWLTLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSLLGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Atome Classification :
(20 SA)
------.........10........20....----....30........40.--..-.....50........60........70........80........90-------------....----.....100.......110.......120.......130.......140.......150.......160.......170.......-180.......190.......200.......210.....-.-.220.......230-----------------...-------......240.......250.......260.......270.......280....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------M
Q
D
I
I
A
Y
F
I
Q
N
L
T
A
L
Y
I
A
V
A
L
V
S
L
C
----
I
G
S
F
L
N
V
V
I
YRT
P
K
M
M
E
--
Q
D
-
W
Q
Q
E
C
Q
M
LLNPEQPIIDHEKLTLSKPASSCP
A
C
Q
Q
P
I
R
W
Y
QNIP
V
I
--------------
S
W
L
T
----LRGKCGHCQHP
I
S
IR
Y
P
A
V
E
L
L
T
M
L
C
S
L
V
V
V
M
VFG
P
T
I
Q
M
L
F
G
L
V
L
T
W
V
L
I
A
L
T
F
IDFDTQLLPD
R
F
T
L
T
L
A
A
LGLG
I
N
T
F
N
I
YT-SPN
S
A
I
W
G
Y
L
I
G
F
L
C
L
W
I
V
Y
Y
L
F
K
V
ITGKEGMG
Y
G
D
F
K
-
L
-
L
A
A
L
G
A
W
M
G
P
L
M
-------------------
L
P
L
-------
I
V
L
L
S
S
L
L
G
A
I
I
G
I
I
L
L
K
LRNDNQPFAFG
P
Y
I
A
I
A
G
W
V
A
F
L
WGD
Q
I
M
K
I
Y
LGG
32
Fugue
75.99
12%
-
- C4 -
-
3WUQ
-
DYHC1_MOUSE
A:
[3209-3471]
------
T
V
D
Q
V
E
E
L
R
R
D
L
R
I
K
S
Q
E
L
E
V
K
N
A
A
----
A
N
D
K
L
K
K
M
V
K
D
Q
Q
E
A
E
K
--
K
K
V
M
S
Q
E
I
Q
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Q
L
H
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Q
Q
E
V
I
A
D
K
Q
M
S
V
K
E
D
L
D
K
V
E
--
P
A
V
I
E
A
Q
N
A
V
K
S
I
-------------------------
K
K
Q
H
L
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V
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M
A
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A
A
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A
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A
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K
M
K
K
N
Y
M
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N
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S
Y
N
Y
E
I
-
V
N
R
A
S
--------
L
A
C
G
P
M
V
K
W
A
I
A
Q
L
N
Y
A
D
M
----
L
K
-
R
-
V
E
P
L
R
N
E
L
Q
K
L
E
-------------------
D
D
A
-------
K
D
N
Q
Q
K
A
N
E
V
E
Q
M
I
R
D
L
E
A
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I
A
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K
E
E
Y
A
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E
A
Q
A
I
K
A
D
L
A
A
V
E
A
K
V
N
---
27
Fugue
67.22
21%
-33
- C5 -
-
4XOI
1
ANLN_HUMAN
B:
[3-269]
VN
I
K
Q
K
M
Q
E
L
N
N
E
I
N
M
Q
Q
T
V
I
Y
Q
A
S
Q
A
L
N
C
C
----
V
D
E
E
H
G
-----
K
G
S
L
E
E
--
A
E
-
A
E
R
L
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I
A
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N
E
M
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L
S
E
I
R
L
P
----------------------
L
K
----
A
D
F
V
C
S
T
V
Q
K
P
D
A
A
N
Y
Y
Y
L
I
I
L
K
A
G
A
E
N
M
V
A
T
P
L
A
S
T
S
N
S
L
N
G
D
A
L
T
F
T
T
------
T
F
T
L
Q
D
V
S
N
D
F
E
I
N
I
E
V
Y
S
L
V
Q
K
K
S
A
V
R
T
-
S
N
--------------------
F
A
L
V
--------
G
S
Y
T
-
L
S
L
S
S
V
G
N
--
T
K
F
V
-------------------
L
D
K
-------
V
P
F
L
S
S
L
E
G
----
H
I
Y
L
K
I
K
C
Q
V
------------------------------
30
Fugue
54.25
14%
-49
- C2 -
-
1FUI
1
FUCI_ECOLI
A:
[356-591]
---
A
Q
V
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A
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Y
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A
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R
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L
A
----
E
H
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A
A
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SC
K
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-
R
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P
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M
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I
S
Q
Q
E
A
D
A
C
L
A
A
T
E
W
C
P
A
I
H
E
---
Y
F
R
G
G
G
Y
S
--------------
S
R
F
L
----
T
E
G
----------------
G
V
P
F
T
M
T
R
V
N
I
I
K
G
L
G
P
V
L
Q
I
A
E
G
W
S
V
E
---------------
L
P
K
D
V
H
D
I
L
N
K
R
----------
T
-
N
S
T
---------
W
P
T
T
W
F
A
P
R
L
T
---------
G
K
G
P
F
T
D
V
-
Y
S
V
M
A
N
W
G
A
N
H
G
-------------------
V
L
T
I
G
HV
G
A
D
F
I
T
L
A
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V
C
M
H
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V
E
E
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R
P
S
A
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A
A
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E
G
Q
D
Y
R
A
C
Q
N
Y
G
P
L
Y
K
R
-
3
HHSearch
51.72
21%
-241
- C5 -
-
3S0X
-
FLAK_METM6
A:
[502-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
Y
I
I
G
A
L
G
L
I
I
A
S
V
Q
D
----
E
I
E
D
Y
I
W
I
F
L
A
V
F
G
V
L
F
A
I
Y
S
S
I
T
L
L
D
Y
S
I
L
I
N
S
I
S
G
F
V
I
C
F
I
L
G
Y
M
M
---
F
-
L
S
G
I
G
G
G
D
G
K
-
M
-
L
I
G
L
G
A
L
V
P
K
F
Q
M
P
I
Y
T
S
L
G
T
L
L
N
LNYVP
T
F
P
I
M
-------
V
F
I
N
G
I
F
F
M
V
F
L
P
F
V
I
L
F
-----------------------------------
1
PsiBlast_PDB
44.27
27%
-180
- C5 -
-
3S0X
-
FLAK_METM6
A:
[511-607]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
I
A
S
V
Q
D
----
E
I
E
D
Y
I
W
I
F
L
A
V
F
G
V
---
L
F
A
I
Y
S
-
S
I
T
L
L
D
Y
S
I
L
I
N
S
I
S
G
F
V
I
C
F
I
L
G
Y
M
M
F
L
S
G
I
G
G
G
D
G
K
-
M
-
L
I
G
L
G
A
L
V
P
K
F
Q
-------------------
M
P
I
-------
Y
T
S
L
G
T
L
L
---------------------------------------------
2
HHSearch
43.89
21%
0
- C- -
-
3S0X
-
B:
[502-679]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
Y
I
I
G
A
L
G
L
I
I
A
S
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Q
D
F
R
S
R
E
I
E
D
Y
I
W
I
F
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A
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G
V
L
F
A
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Y
S
S
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L
D
Y
S
I
L
I
N
S
I
S
G
F
V
I
C
F
I
L
G
Y
M
M
---
F
-
L
S
G
I
G
G
G
D
G
K
-
M
-
L
I
G
L
G
A
L
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P
K
F
Q
M
P
I
Y
T
S
L
G
T
L
L
NLNYVP
T
F
P
I
M
-------
V
F
I
N
G
I
F
F
M
V
F
L
P
F
V
I
L
F
-----------------------------------
7
HHSearch
42.58
18%
-193
- C6 -
-
5K2M
-
?
F:
[3-35]
-------------------------------------------------------------------------------------
E
C
P
V
C
G
S
E
I
E
I
G
E
V
E
L
-------------------
H
----
Q
I
V
E
C
P
V
C
G
A
E
L
E
V
V
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.69
21%
-159
- C6 -
-
5X51
-
?
X:
[30-58]
-----------------------------------------------------------------------------------
K
Y
T
C
G
A
C
A
H
N
F
S
L
N
K
----------------------
S
----
D
P
V
R
C
K
E
C
G
H
R
V
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
40.07
25%
-131
- C6 -
-
5FMF
-
RPAB4_YEAST
L:
[29-56]
------------------------------------------------------------------------------------
Y
I
C
A
E
C
S
S
K
L
S
L
S
R
----------------------
T
----
D
A
V
R
C
K
D
C
G
H
R
I
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.60
18%
-186
- C6 -
-
5K2M
-
?
E:
[3-35]
-------------------------------------------------------------------------------------
E
C
P
V
C
G
S
E
I
E
I
G
E
V
E
L
-------------------
H
----
Q
I
V
E
C
P
V
C
G
A
E
L
E
V
V
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
39.23
9%
-
- C3 -
-
3RV1
-
?
A:
[15-256]
----S
N
E
L
K
V
R
E
F
Y
R
L
H
N
A
C
V
K
L
K
E
S
I
K
L
I
Y
E
NPL
V
T
D
Q
N
V
L
N
L
G
T
A
E
N
T
I
D
--
Y
T
-
I
L
N
T
-
P
T
L
N
V
A
K
T
L
L
G
N
R
Y
S
L
D
L
I
D
L
F
Q
S
H
D
F
K
D
S
N
T
D
V
D
M
F
I
K
Y
P
--------------
V
V
Y
D
----
E
N
L
E
N
L
A
F
M
H
K
---
S
Q
L
S
N
E
R
L
E
F
L
G
D
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W
L
G
A
L
V
S
Y
I
V
Y
T
R
F
---------------------
P
S
A
N
E
G
M
L
S
Q
M
K
E
S
I
V
N
---------------------------------------
N
N
N
L
F
-
D
-
W
S
T
K
L
N
F
T
K
R
L
Q
-------------------
G
N
I
-------
A
K
R
Y
A
D
C
V
Q
A
Y
I
G
A
L
V
I
D
R
F
G
T
E
-------
F
L
D
I
K
E
W
L
E
E
L
S
E
K
K
L
A
K
-----
6
HHSearch
33.54
21%
-101
- C6 -
-
3WWN
-
?
B:
[3-35]
------------------------------------------------------------------------------------
G
T
C
P
E
C
G
A
E
L
R
L
E
N
P
E
-------------------
L
G
----
E
L
V
V
C
E
D
C
G
A
E
L
E
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
32.81
17%
-129
- C6 -
-
5FLM
-
RPAB4_BOVIN
L:
[16-44]
-----------------------------------------------------------------------------------
I
Y
I
C
G
E
C
H
T
E
N
E
I
K
S
-------------------
R
-------
D
P
I
R
C
R
E
C
G
Y
R
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.60
21%
-91
- C6 -
-
3WWL
-
LYSW_THET8
A:
[3-35]
------------------------------------------------------------------------------------
G
T
C
P
E
C
G
A
E
L
R
L
E
N
P
E
-------------------
L
G
----
E
L
V
V
C
E
D
C
G
A
E
L
E
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
32.20
19%
-106
- C6 -
-
2Y0S
-
?
P:
[4-34]
------------------------------------------------------------------------------------
Y
R
C
G
K
C
W
K
T
F
T
D
E
Q
L
K
-----------------
V
--
L
----
P
G
V
R
C
P
Y
C
G
Y
K
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
31.72
26%
-119
- C6 -
-
2K5C
-
?
A:
[9-65]
------------------------------------------------------------------------------------
A
K
C
P
I
C
G
S
P
L
K
W
E
E
L
I
E
E
M
LIIEN
F
E
E
I
V
K
D
R
E
R
F
L
A
Q
V
E
E
F
V
F
K
C
P
V
C
G
E
E
F
Y
G
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
31.29
16%
-115
- C6 -
-
4QIW
-
RPOP_THEKO
W:
[8-35]
--------------------------------------------------------------------------------------
C
A
K
C
G
K
E
V
E
L
D
L
A
T
--------------------
A
----
R
E
V
R
C
P
Y
C
G
S
K
I
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
30.72
22%
-138
* C7 *
-
2K4X
-
RS27A_THEAC
A:
[17-48]
----------------------------------------------------------------------------------
K
H
R
F
C
P
R
C
G
P
G
V
F
L
A
E
---------------------
H
A
----
D
R
Y
S
C
G
R
C
G
Y
T
E
F
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
30.48
17%
-97
- C6 -
-
5IY9
-
RPAB4_HUMAN
L:
[16-44]
-----------------------------------------------------------------------------------
I
Y
I
C
G
E
C
H
T
E
N
E
I
K
S
-------------------
R
-------
D
P
I
R
C
R
E
C
G
Y
R
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
30.29
19%
-87
- C6 -
-
4AYB
-
?
P:
[5-34]
-------------------------------------------------------------------------------------
R
C
G
K
C
W
K
T
F
T
D
E
Q
L
K
-----------------
V
--
L
----
P
G
V
R
C
P
Y
C
G
Y
K
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------