@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VM03: (2017-11-05 )
MYSLMSVTEKETSNSLYRQWQILSRLPTGKWIGTRELQEMLEREGIEISLRTIQRDLNQIAQRFPIESNKAVPQGWRWQSDAPIQSLPHMTSSQAVTFMMVEEHLKRLLPPSLLDEMGPWFDLAKRSLSTQNNVRQWINRVRIVPASQPLIPPVVDRAAQQAIYEGLLQDKQIECVYRARVNQGEDKTYILNPLALVQKGAVIYLICTRHDKTEVQTFALHRFKSAKVLESRALHPVNFDIDHYIDSGALGFRVDYNQPTESIQLTLTMTEQTAKTFYESQLSKDQTITPIEENIVEVTATVPFTSQLVWWLRSFGKKLLHIEPVQVHNAVREIEPDSK
Atome Classification :
(20 SA)
---------------------.........10..---......20...--------------------.....30.------.......40..----....-.---.50........60........70.....--...80........90....-----....-100--.......110-.----------.......120.....--.-----.130.......140-.---------......150.......160.....--------..170.--......180..---.....190--........200------.......---..210.......220---------------........230........240...--------------------....250-------------.....----------------------...260...---....270.......280-------------........290.....-..300----........310.......320.......330.......---
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------MYS
L
M
S
V
T
E
KET
S
---
N
S
L
Y
R
Q
W
Q
I
L
S
--------------------RLPTGKWI------
G
T
R
E
L
Q
E
M
L
E
R----EG
I
E
-
I
---
S
L
R
T
I
Q
R
D
L
N
Q
I
A
Q
RFPIESNKAVPQGW--RWQSDAP
I
Q
SLPHMTSSQA-----
V
T
F
M
-
M
V
E
--
E
H
L
K
R
LL
P
P
--
S
----------
L
L
D
EMG
P
W
F
D
L
A
K
R
S--L-----S
T
Q
N
N
V
R
Q
W
I
N
R
V
R
-I---------VPASQPLI
P
P
V
V
D
R
A
A
Q
Q
A
I
Y
E
G
L
--------LQDK
Q
I
--
E
C
V
Y
R
ARVNQG---ED
K
T
Y
I
L---
N
P
L
A
L
VQKG--------
A
V
I
Y
L
I
C---TRHDKT
E
V
Q
T
F
A
L
H
----------------
R
F
K
S
A
K
V
L
E
S-RALHPVNFD
I
D
H
Y
I--------------------DSG
A
L
G
--------------
F
R
V
DY----------------------NQPT
E
S
I
Q
L
---
T
L
T
M
T
E
Q
T
A
K
T
F
Y
E
S
Q--------------LSKDQTITPIEEN
I
V
E
-
V
T
AT-----V
P
F
T
S
Q
L
V
W
W
L
R
S
FGKK
L
L
H
IE
P
V
Q
V
H
N
A
V
R
EIEPDSK---
21
PsiBlast_CBE
55.11
32%
-152
- C5 -
-
3FHZ
3
ARGR_MYCTU
D:
[15-64]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
54.86
32%
-158
- C5 -
-
3FHZ
2
ARGR_MYCTU
B:
[15-64]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
54.04
32%
-154
- C5 -
-
3FHZ
2
ARGR_MYCTU
C:
[15-64]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
52.60
32%
-171
- C5 -
-
3LAJ
2
ARGR_MYCTU
E:
[17-64]
-------------------------------------
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
52.35
32%
-160
- C5 -
-
3LAP
2
ARGR_MYCTU
F:
[17-64]
-------------------------------------
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
52.30
32%
-165
- C5 -
-
3LAJ
2
ARGR_MYCTU
F:
[16-64]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
52.28
32%
-154
- C5 -
-
3FHZ
2
ARGR_MYCTU
F:
[16-64]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
52.02
32%
-148
- C5 -
-
3FHZ
2
ARGR_MYCTU
E:
[16-64]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.82
32%
-159
- C5 -
-
3FHZ
2
ARGR_MYCTU
A:
[16-64]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
51.55
32%
-134
- C5 -
-
3ERE
2
ARGR_MYCTU
D:
[15-64]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
51.51
32%
-163
- C5 -
-
3LAP
2
ARGR_MYCTU
E:
[17-64]
-------------------------------------
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
51.50
17%
20
- C3 -
-
3RFY
-
CYP38_ARATH
A:
[78-433]
----------------------
G
G
I
L
L
V
A
N
P
V
I
P
---
D
--------
V
S
--------------------
V
L
I
S
G
P
P
I
------
K
D
---
P
E
A
L
L
R
----
Y
A
L
P
-
I
DN
K
A
I
R
E
V
Q
K
P
L
E
D
I
T
D
S
L
K
I
A
G
V
K
A
L
D
S
V
E
--
R
N
V
R
Q
A
S
-
R
T
L
Q
Q
G
K
S
I
I
V
-----
A
G
F
A
E
S
K
K
--
D
H
G
N
E
M
I
E
K
L
E
A
----------
G
M
Q
D
M
L
K
I
V
E
D
R
K
R
D
AV
A
-----
P
K
Q
K
E
I
L
K
Y
V
G
G
I
E
-
E
D
M
VDGFPYE
V
P
E
E
Y
R
N
M
P
L
L
K
G
R
A
S
V
D
M
K
V
K
I
K
--------
D
N
P
N
I
E
--
D
C
V
F
R
I
V
L
D
G
Y
---
N
A
P
V
T
A
G
---
N
F
V
D
L
V
E
R
H
--------
F
Y
D
G
M
E
I
---
Q
R
S
D
G
F
V
V
Q
T
G
D
-
P
----------------
E
G
P
A
E
G
F
I
D
P
-
S
T
E
K
T
R
T
V
P
L
E
I
M
V
--------------------
T
G
E
K
T
P
--------------
F
Y
G
S
T
----------------------
L
E
E
L
G
L
Y
K
A
---
Q
V
V
I
P
F
N
A
F
G
T
M
A
M
A
R
EEF
E
N
D
S
GSSQVFW
L
L
K
E
S
E
L
T
P
S
N
S
N
I
L
D
G
R
Y
A
V
-----
F
G
Y
V
T
D
N
E
D
F
L
A
D
L
-
K
V
G
D
V
I
E
S
I
Q
V
V
S
G
L
E
N
L
A
N
P
S
Y
---
4
PsiBlast_PDB
51.34
32%
-143
- C5 -
-
3LAP
2
ARGR_MYCTU
A:
[16-70]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
51.22
32%
-154
- C5 -
-
3LAP
2
ARGR_MYCTU
D:
[17-64]
-------------------------------------
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
51.10
32%
-161
- C5 -
-
3LAJ
2
ARGR_MYCTU
D:
[16-64]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
50.86
21%
31
- C2 -
-
2Q06
-
?
A:
[22-496]
A
T
E
I
R
A
S
V
G
R
M
V
G
G
I
G
R
F
Y
I
Q
M
C
T
E
L
K
L
S
D
Q
E
G
R
L
I
Q
N
S
I
T
I
E
R
M
V
L
S
A
F
DERRNRYKDPK
K
T
G
G
PIY
R
R
R
D
G
K
W
V
R
E
L
I
L
Y
D
K
E
E
I
R
R
I
W
R
Q
A
N
NG
E
D
A
T
-
A
---
G
L
T
H
M
M
I
W
H
S
N
L
N
D
A
T
Y
Q
R
T
R
A
L
V
R
T
G
M
DP
R
M
C
S
L
M
Q
G
S
T
L
P
R
R
S
G
A
A
G
A
A
I
KG
V
G
T
M
-
V
M
E
L
I
R
M
I
K
R
G
I
N
D
--
R
NFWRGENG
R
R
T
R
I
A
Y
E
R
M
C
N
I
L
K
G
K
--
F
-----
Q
T
-
A
A
Q
K
A
M
M
D
Q
V
R
E
S
---------
R
N
P
G
N
A
E
I
E
D
L
I
F
L
A
R
S
A
L
I
L
R
G
S
--------
I
A
H
K
S
C
L
P
A
C
V
Y
G
L
A
V
A
S
G
YDF
E
R
E
G
Y
S
L
VGI
D
P
F
R
L
L
Q
N
S
--------
Q
V
F
S
L
I
R
PNE
N
P
A
H
K
S
Q
L
V
W
M
A
C
H
SAAFED
L
R
V
S
S
F
I
R
G
T
R
V
I
P
R
G
Q
L
S
T
-
R
G
V
Q
I
A
S
N
E
N
V
E
A
M
--------------------
D
S
S
T
L
E
--------------
L
R
S
R
Y
W
A
I
R
T
RSG
G
N
T
N
Q
Q
RA
S
A
G
Q
I
S
V
Q
P
T
F
S
V
Q
R
---
N
L
P
F
E
R
A
T
I
M
A
A
F
K
G
----------------
N
T
E
G
R
T
S
D
M
R
T
E
I
I
R
-
M
M
E
S
ARPED
V
S
F
Q
G
R
G
V
F
E
L
S
D
E
K
A
T
N
P
I
V
P
S
F
D
M
S
N
E
G
S
Y
F
F
G
D
N
A
EEY
3
PsiBlast_PDB
50.35
32%
-140
- C5 -
-
3LAJ
2
ARGR_MYCTU
A:
[15-71]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
50.26
32%
-138
- C5 -
-
3LAJ
2
ARGR_MYCTU
C:
[15-71]
--------------------------------
A
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
50.25
32%
-141
- C5 -
-
3LAP
2
ARGR_MYCTU
C:
[16-70]
---------------------------------
A
---
N
R
A
G
R
Q
A
R
I
V
A
--------------------
I
L
S
S
A
Q
V
R
------
S
Q
N
E
L
A
A
L
L
A
A
----
E
G
I
E
-
V
---
T
Q
A
T
L
S
R
D
L
E
E
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
49.82
13%
-6
- C5 -
-
5IWZ
-
SYCP2_MOUSE
A:
[4-397]
------------------------------
M
P
V
R
---
P
D
L
Q
Q
L
E
K
C
I
D
--------------------
D
A
L
R
K
N
--------
D
F
K
P
L
L
A
L
L
Q
I
----
D
I
C
E
D
V
---
K
I
K
C
S
K
Q
F
L
R
K
L
D
D
L
I
C
R
E
L
N
K
----
K
D
--
I
Q
T
V
S
S
I
L
I
S
I
G
R
C
S
K
N
--------
I
F
I
-
L
G
Q
--
A
G
L
Q
T
M
I
K
Q
--
G
----------
L
V
Q
K
M
V
S
W
F
E
N
S
K
E
I
--
I
LNQDE
A
V
M
N
M
I
E
D
L
F
D
L
L
M
-
V
---------
I
Y
D
I
S
D
E
G
K
N
Q
V
L
E
S
F
I
P
Q
I
C
A
L
V
I
DSRVN
F
C
I
Q
Q
E
A
L
--
K
K
M
N
L
M
L
D
R
I
N
---
Q
E
M
L
T
L
M
---
S
N
M
G
E
R
I
L
D
VGD
Y
E
L
Q
V
G
I
V
E
A
L
C
---
R
M
T
T
E
K
R
R
Q
E
L
A
Y
E
----------------
W
F
S
M
D
F
I
A
N
A
F
K
E
I
K
D
C
E
F
E
T
D
C
R
I
F
L
N
L
V
N
G
I
L
GDKRR
V
Y
T
F
P
C
L
S
A
F
L
G
K
Y
E
L
Q
I
PSDEKLEE
F
W
I
D
F
----------------------
N
L
G
S
H
T
L
S
F
Y
IE
A
V
T
V
P
E
E
K
V
Q
M
Y
N
I
E
V
--------------
R
E
S
K
K
L
L
T
L
T
L
K
N
I
V
K
-
I
S
K
-------
K
E
G
K
E
L
L
F
Y
F
D
---------
E
S
L
E
I
T
N
V
T
K
K
V
F
G
G
L
E
HH-