@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTI0: (2017-12-13 )
MAQVQDPTFWGGNIAFWIQTLVFFISALIAIYTLRRNEAQAKKRATVDLVLSETQDMYFRDIKEKFGKYK
Atome Classification :
(16 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-----------.....10...---.....20.-....--...30........40------..-..--....50.--.....-..60......-..70--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQV-----------QDPTFWG
G
N
I
---
A
F
W
I
Q
T
L
V
-
F
F
I
S
--
A
L
I
A
I
Y
T
LRR
N
E
A
Q
A------KK-
R
A
--
T
V
D
L
V
LS--ETQ
D
M
-
Y
F
R
D
I
K
E
K
FG-KYK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
66.56
26%
-7
- C4 -
-
5JXR
-
?
A:
[7-639]
S
K
E
D
D
T
L
R
R
F
R
Y
L
L
G
LTD
L
F
R
H
F
I
E
T
NPN
P
K
I
R
E
I
M
K
E
I
D
R
Q
N
E
E
E
A
R
Q
RKRGGRQGGATSE
R
R
R
R
T
E
A
E
E
D
A
E
L
L
K
D
E
K
D
GGSA
E
T
V
F
RESPPFIQ
G
T
M
R
D
Y
Q
I
A
G
L
N
W
L
I
S
L
H
E
N
G
I
S
G
I
LADEMGLG
K
T
L
Q
T
I
A
F
L
G
Y
L
R
HIMGITGP
H
L
V
T
V
P
KST
L
D
N
W
K
R
E
F
E
K
WTPE
V
N
V
L
V
L
Q
G
A
K
E
E
R
H
Q
L
I
N
D
RLVDENFD
V
C
I
T
S
Y
E
M
I
L
R
E
K
A
H
L
K
K
FAWE
Y
I
I
I
D
EAS
L
A
Q
V
I
R
M
FNSR
N
R
L
L
I
T
GTPLQNN
L
H
E
L
W
A
L
L
N
F
L
LPDVFGD
S
E
A
F
D
Q
W
F
S
G
-----------
Q
D
R
D
------------
Q
D
T
V
V
-
Q
Q
L
H
--
R
V
L
R
P
F
L
L
R
R
V
K
S
D
V
E
K
S
L
L
P
K
K
-
E
I
--
N
V
Y
I
G
M
S
--
E
M
Q
V
K
-
W
Y
Q
K
I
L
E
K
D
I
-
D
A
V
NGAGGKRES
K
T
R
L
L
N
I
V
M
Q
L
R
K
C
C
N
HPYLFEGAEPGPPYTTD
E
H
L
I
Y
N
A
G
K
M
V
V
L
D
K
L
L
K
R
I
Q
K
Q
G
S
R
V
L
I
F
S
QM
S
R
L
L
D
I
L
E
D
Y
C
V
F
R
G
Y
K
Y
C
R
I
DGSTAHED
R
I
A
A
I
D
E
Y
N
KPGSDKF
I
F
L
L
T
T
R
A
G
G
LGINLTTADIVILYDSDWN
P
Q
A
D
L
Q
A
M
D
RAHRIGQT
K
Q
V
V
V
Y
R
F
V
TDNA
I
E
E
K
V
L
E
R
A
A
Q
K
L
R
L
D
Q
L
V
I
Q
Q
G
R
A
Q
V
A
A
K
AAAN
K
D
E
L
L
S
M
I
Q
HG
A
E
K
V
F
Q
TKGAFGTMAEKGSQLD
D
D
D
I
D
A
I
L
Q
A
G
E
T
R
T
K
E
L
N
A
R
Y
E
KLG
I
D
D
L
Q
K
F
10
Fugue
57.63
22%
50
- C2 -
-
2EZW
-
KAP0_BOVIN
A:
[12-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
L
R
E
C
-----------
E
L
-------------------------------
Y
V
Q
K
H
N
I
Q
A
L
------
L
K
-
D
S
--
I
V
Q
L
C
T
A
RP
E
R
P
M
A
-
F
L
R
E
Y
F
E
K
L
E
-
K
E
E
AK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
50.15
12%
100
- C1 -
-
1TAC
-
?
?:
[1-86]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
P
V
DPNIEPWNHPG
S
Q
P
K
T
A
S
N
R
A
HAK
K
S
A
Y
H
S
Q
V
-
A
F
I
T
--
K
G
L
G
I
S
Y
G
R
K
K
R
R
Q
R
------
R
R
-
P
S
QG
G
Q
T
H
Q
D
P
--
I
P
K
Q
P
-
S
S
Q
P
R
G
D
P
T
G
-
P
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
48.57
13%
5
* C3 *
-
5JUG
6
?
A:
[1-168]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SACPSG
A
T
C
G
S
Y
T
V
G
G
L
G
S
R
K
Q
Q
V
R
N
A
GGS
S
L
D
L
A
V
A
M
L
Q
TERMDTA
Y
P
Y
G
-----------
D
N
K
S
G
D
A
A
N
F
---
G
I
F
K
Q
N
W
L
-
M
L
R
S
--
A
C
A
Q
F
----
G
G
Q
G
A
G
------
Q
Y
-
D
N
--
G
A
A
L
N
S
S
--
L
G
Q
D
V
S
C
L
H
Q
S
Q
S
H
Y
G
-
L
D
A
W
F
A
G
H
R
NG
A
S
G
L
S
S
PNT
A
D
I
A
A
Y
K
A
A
V
Y
W
I
K
A
Q
L
D
A
DSANLGND
T
R
F
W
V
QVPAI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
46.75
14%
45
- C3 -
-
3L9A
1
?
X:
[9-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDF
F
V
I
T
-----------
N
S
E
Y
T
F
A
G
-----
V
H
Y
A
K
G
A
V
-
L
H
V
S
PT
Q
K
R
A
F
W
V
I
A
D
Q
E
N
F
I
------
K
Q
V
N
K
--
N
I
E
Y
V
E
K
--
N
A
S
P
A
-
F
L
Q
R
I
V
E
I
Y
Q
V
K
F
E
GKNVH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
46.04
15%
-26
- C4 -
-
1K4U
-
NCF1_HUMAN
P:
[359-390]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
P
Q
P
A
V
------
P
P
-
R
P
--
S
A
D
L
I
L
N
--
R
C
S
E
S
-
T
K
R
K
L
A
S
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
40.06
21%
-8
* C2 *
-
2M20
-
EGFR_HUMAN
A:
[37-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
R
R
L
L
Q
--
E
R
E
L
V
-
E
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.58
4%
-182
- C4 -
-
2HFE
-
?
D:
[15-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
M
V
A
G
I
-
T
S
F
G
--
L
V
T
A
A
L
A
T
W
F
V
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
37.09
16%
40
- C4 -
-
1QEY
-
RMNT_BPP22
C:
[52-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
------
D
A
-
E
R
--
L
A
D
E
Q
S
E
--
L
V
K
K
M
-
V
F
D
T
L
K
D
L
Y
K
-
K
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.84
10%
-37
- C4 -
-
2KV5
-
?
A:
[12-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
V
G
--
L
V
L
E
M
I
S
R
V
L
D
E
E
D
D
------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
33.51
9%
-210
- C4 -
-
4B19
-
?
A:
[3-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
V
H
I
I
A
P
V
I
S
G
--
C
A
I
A
F
F
S
Y
W
L
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
31.18
4%
-36
- C4 -
-
2HG5
-
?
D:
[15-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
M
V
A
G
I
-
T
S
F
G
--
L
V
T
A
A
L
A
T
W
F
V
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.72
29%
32
- C4 -
-
2KRX
-
?
A:
[13-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
L
E
--
T
N
Q
P
E
-
Q
F
L
T
T
I
E
L
L
E
-
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
25.61
23%
200
- C4 -
-
2N2A
-
B:
[135-156]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
Q
K
I
------
R
K
--
Y
--
T
M
R
R
L
L
Q
--
E
T
E
L
V
-
E
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
22.33
25%
-
- C4 -
-
5CWW
-
NU159_CHATD
C:
[1442-1457]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
A
------
K
R
-
K
A
--
T
L
R
M
L
R
E
--
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
20.44
13%
12
* C4 *
-
5ET1
1
MYO3B_MOUSE
C:
[7-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
------
R
R
-
C
Q
--
Q
P
K
M
L
S
S
--
P
E
D
T
M
-
Y
Y
N
Q
L
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------