@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XZQ1: (2018-01-16 )
MKETRQFIWTYIKIIFALFILGVAINMFLGPHHIAAGGVSGLGILLEAALGFDRAIVILVLNIVMLVLALLFLGKKPFFKVLFGSLVFPLIIAIVPETMITSDRLLSVIFGSAIFALGVAILYKNNSSSGGTTIPPLIFKKYFHLNTSIGLFFTDAFVVSLNLFVFGIEEFLYAILSIAITSIVMTYIETGINRKKSVMVMSEHYLEDIRLRLSAEIGRGLTLLEAKGGYNRKSKEVLLIVVTDHEFSRMKPLIEEIDPSAFVIVSSVAEVMGRGFTYHPIE
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80........90........100.......110.......120......---.130-.......140.......150.......160.......170.------......180.......190--......-..-200...--------....210-......-.220-..--------.....230-----------..----------------.---......240.-.......250...-.-..-----.---260-.......270.......280--------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
E
T
R
Q
F
I
W
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Y
I
K
I
I
F
A
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A
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N
M
FLGPHHIAAGG
V
S
G
L
G
I
L
L
E
A
A
LGF
D
R
A
I
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L
N
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M
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V
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A
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FLGKK
P
F
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P
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I
I
A
IV
P
E
TMI
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L
S
V
I
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S
A
I
F
A
L
G
V
A
I
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Y
KNNSS---SGGT-TI
P
P
L
I
F
K
K
Y
F
HLNTS
I
G
L
F
F
TD
A
F
V
V
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L
N
L
F
V
F
G
I
E
E
F
L
Y
------
A
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M
T
Y
I
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TG---INRK
K
S
-
V
M
-
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M
S
E
H
Y
--------
L
E
D
I
R
L
R
-
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A
EIG-R
G
L
T
-
L
L
--------
E
AKGGY-------------NR----------------K---S
K
E
V
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L
I
-
V
V-TDH
E
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P
L
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-E-ID-----P---SA
F
-
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S
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A
E
V
MGRGFTYHPIE--------------------------------
2
HHSearch
73.50
31%
-232
- C2 -
-
3HLU
-
?
A:
[3-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
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-------------
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---
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---
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------------------------------------------------
23
Fugue
60.00
24%
-49
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4LQK
-
A46_VACCW
A:
[4-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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DMICCD
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-----
T
N
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--------
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GHTESI
E
D
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F
D
Y
---------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
59.87
36%
-251
- C2 -
-
3HLU
-
?
A:
[21-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
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-
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--------
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A
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-------------
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N
----------------
N
---
E
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K
-
E
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D
-----
P
---
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A
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-
M
I
V
S
------------------------------------------------
8
HHSearch
53.44
14%
-51
- C2 -
-
2DCL
2
Y1503_PYRHO
A:
[10-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
-
L
R
-
I
Y
I
G
E
N
DKWEGRP
L
Y
K
V
I
V
E
K
-
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R
E
-
M
G
I
A
G
A
T
-
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--------
R
G
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F
-------------
G
------------------T
D
-
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-----
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---
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M
-
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E
P
T
I
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L
W
V
G
T
Q
--------------------------------------
3
HHSearch
52.36
20%
-151
- C2 -
-
4RLE
1
YAAQ_BACSU
A:
[11-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
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V
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D
Q
D
--------
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--------
A
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F
-------------
L
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----------------
S
---
G
N
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F
M
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-
E
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-
E
-
N
G
-----
Q
---
K
R
D
-----------------------------------------------------
27
Fugue
51.50
19%
-130
- C2 -
-
5IQJ
3
?
A:
[4-134]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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A
A
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A
H
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V
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-----------
G
F
N
-
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A
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S
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P
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A
F
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D
T
T
N
-------
G
N
V
E
------
D
I
A
L
V
G
L
A
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E
A
I
Q
Y
Y
I
E
G
---
V
D
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C
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P
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-
I
W
-
E
C
N
--------
L
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L
S
-
D
Q
E
L
V
-------------------
K
D
L
Y
-------------
N
D
----------------
V
---
E
L
W
E
K
L
Y
-
T
L
-
F
E
Q
H
H
D
S
I
L
D
L
A
N
-
S
-
I
------------------------------------------------------------------
18
HHSearch
51.16
24%
-30
- C2 -
-
1O51
1
Y021_THEMA
A:
[14-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
L
K
-
I
Y
L
G
E
K
DKHSGKP
L
F
E
Y
L
V
K
R
-
A
Y
E
-
L
G
M
K
G
V
T
-
V
Y
--------
R
G
I
M
G
F
-------------
G
H
-----------------P
D
-
L
P
I
V
L
E
I
-
V
D
-
E
E
E
R
I
N
L
F
L
K
E
I
D
-
N
-
I
D
-----
F
---
D
G
L
-
V
F
T
A
D
V
N
V
V
K
------------------------------------------
29
Fugue
50.26
16%
-4
- C1 -
-
1EEX
2
?
A:
[1-551]
MRS
K
R
F
E
A
L
A
K
RPVNQ
D
G
F
V
K
E
WIEEGFIAMESPNDPK
P
S
I
K
I
V
NGAVTELDGKPVSDFD
L
I
D
H
F
I
A
R
YGINLNR
A
E
E
V
M
A
MD
S
V
K
L
A
N
M
L
C
DPNVKRSEI
V
P
L
T
T
A
MT
P
A
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I
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MN
V
V
E
M
M
M
A
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M
RARR
T
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S
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Q
A
H
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T
N
VKDN
P
V
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I
A
A
D
A
A
E
G
A
W
R
GFD
E
Q
E
T
T
V
AVARY
A
P
F
N
A
I
A
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L
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V
G
RPG
V
L
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M
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GHTCYAETISVYGT
E
P
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DDT
P
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A
A
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-
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H
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-
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---
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G
L
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P
V
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------
E
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------
A
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N
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A
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M
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LPP
I
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E
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A
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A
H
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--------
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-
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I
N
K
N
R
N
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G
L
----------------
E
---
V
V
K
A
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A
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-
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-
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-----
T
---
G
D
Y
-
L
H
T
S
A
I
I
V
--
G
D
G
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V
L
S
A
V
N
DVNDYAGPATGYRLQG
E
R
W
E
E
I
K
NIPGALDPN
21
HHSearch
48.95
20%
-35
- C2 -
-
4OZN
2
?
A:
[33-137]
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K
L
-
V
M
-
A
I
I
R
P
D
K-------
L
A
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V
K
T
A
-
L
A
E
-
V
G
A
P
S
L
T
-
V
T
--------
N
V
S
G
R
G
S
QKS
Q
W
R
G
E
E
Y
T
V
D
L
----------------
H
---
Q
K
V
K
V
E
C
-
V
V
-
A
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P
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A
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A
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D
-
A
A
HTGEK
G
---
D
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N
A
I
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V
R
T
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K
------------------------------------
14
HHSearch
47.29
22%
-11
- C2 -
-
3T9Z
-
?
B:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
-
A
V
I
R
P
E
K-------
L
E
C
V
K
K
A
-
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E
E
-
R
G
F
V
G
M
T
-
V
T
--------
E
V
K
G
R
G
---------------VDL-------------
L
---
Q
K
T
K
V
E
V
-
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-
S
D
D
A
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A
RTGKF
G
---
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R
---------------------------------------
22
Fugue
45.83
31%
11
- C2 -
-
3HLU
-
?
A:
[3-74]
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D
Q
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Y
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A
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----------------
N
---
E
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--
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4
HHSearch
44.61
20%
-1
- C2 -
-
2CZ4
-
?
A:
[26-118]
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K
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L-------
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A
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Y
T
-
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--------
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SRGIRSVD-----
W
E
----------------
G
---
Q
N
I
R
L
E
T
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S
E
E
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A
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-
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-----
F
PHY
A
V
I
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A
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V
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V
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R
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Y
--------------------------------------
19
HHSearch
44.58
20%
-21
* C2 *
-
1VFJ
-
?
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
-
A
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K-------
L
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L
T
-
L
S
--------
R
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Q
G
H
G
-------------
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E
TER
V
E
T
Y
R
GTTVKME
L
H
---
E
K
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L
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S
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TGEV-
G
---
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K
V
Y
R
I
R
T
G
E
E
-----------------------------------
13
HHSearch
44.13
22%
15
- C2 -
-
3TA1
2
?
D:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
-
A
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L
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A
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-
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--------
E
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-------------
E
Q
KGIRLQFRG
R
E
V
E
V
D
L
L
---
Q
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V
E
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G
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---
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G
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E
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S
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---------------------------------------
7
HHSearch
42.27
14%
-35
- C2 -
-
2DCL
2
Y1503_PYRHO
B:
[10-110]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
-
L
R
-
I
Y
I
G
E
N
DKWEGRP
L
Y
K
V
I
V
E
K
-
L
R
E
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M
G
I
A
G
A
T
-
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--------
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G
I
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-------------
G
K
----------------
K
ST
D
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-----
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---
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----------------------------------------
11
HHSearch
42.15
17%
-53
- C2 -
-
4RWW
3
?
A:
[4-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
-
A
I
V
Q
D
Q
D-------
S
N
R
L
S
D
A
-
L
T
K
-
G
N
-
F
G
A
T
-
K
L
--------
A
T
T
G
G
F
-------------
L
K
----------------
A
---
G
N
T
T
F
I
I
-
G
T
-
E
D
E
R
V
E
D
A
L
A
I
I
K
-
E
-
N
C
-----------------------------------------------------------------
9
HHSearch
41.74
12%
-64
- C2 -
-
3DFE
2
?
A:
[7-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
-
L
V
-
I
V
T
E
K
V
L-------
L
K
K
V
A
K
I
-
I
E
E
-
A
G
A
T
G
Y
T
-
V
V
--------
D
T
G
G
-------------------------------------
S
N
V
K
F
E
V
-
L
T
E
N
R
E
M
A
E
K
I
A
D
Q
V
A
I
K
-
F
F
-----
T
D
Y
-
A
G
I
-
I
Y
I
C
E
A
E
V
L
Y
G
-----------------------------------------
5
HHSearch
40.77
16%
26
- C2 -
-
5D4N
1
?
B:
[10-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
-
L
E
-
I
I
L
E
G
A
H-------
K
E
F
A
T
D
L
-
L
D
R
-
A
G
V
K
G
Y
T
-
I
V
G
-------
N
L
S
G
K
G
-------------
S
H
GMY-----------------
A
L
I
M
I
I
A
-
A
V
-
P
E
E
L
V
G
P
L
L
E
G
F
Q
-
P
-
F
F
-----
E
A
H
-
S
G
V
-
V
F
V
H
D
I
Q
V
G
R
P
-----------------------------------------
10
HHSearch
40.63
12%
-57
- C2 -
-
3DFE
-
?
B:
[7-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
-
L
V
-
I
V
T
E
K
V
L-------
L
K
K
V
A
K
I
-
I
E
E
-
A
G
A
T
G
Y
T
-
V
V
--------
D
T
G
G
-------------------------------------
S
N
V
K
F
E
V
-
L
T
E
N
R
E
M
A
E
K
I
A
D
Q
V
A
I
K
-
F
F
-----
T
D
Y
-
A
G
I
-
I
Y
I
C
E
A
E
V
L
Y
G
-----------------------------------------
20
HHSearch
40.22
20%
-32
- C2 -
-
1VFJ
-
?
B:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
-
A
I
V
R
P
E
K-------
L
N
E
V
L
K
A
-
L
F
Q
-
A
E
V
R
G
L
T
-
L
S
--------
R
V
Q
G
H
G
---------------M
E
L
-------------
H
---
E
K
V
R
L
E
I
-
G
V
-
S
E
P
F
V
K
P
T
V
E
A
I
L
-
K
A
A
R
TGEV-
G
---
D
G
K
-
I
F
V
L
P
V
E
K
V
Y
R
I
R
T
G
E
E
-----------------------------------