@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Modeled complexes Tab:
Displays
the 10 best
the 20 best
All
ligands Score after transfer from template to
Tito
Scwrl (Raw)
Scwrl (All SChains of Binding Site Recalculated)
Scwrl (Unconserved SChains of Binding Site Recalculated)
Modeller
model
Cell color: RMS between binding site of experimental template and receptor model:
[
‹ 3Å
|
‹ 10Å
|
› 10Å
]
Result:
pKd
Quality
PSim.
[
Good
|
Correct
|
Acceptable
| Bad | Empty = ligand not selected during the calculation step or result rejected ]
Query sequence : STAP1_HUMAN: (2017-06-04 )
CFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYF
Atome Classification :
(20 SA)
Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model
(Only selected ligand are displayed)
(Atome)
(Ident)
(Tito)
(Num)
(pKd)
(Uniprot)
CHAIN_B_2
(3MAZ)
[Raw transfer]
-
1
PsiBlast_PDB
98.54
100%
-181
- C2 -
3MAZ
9.1
2
PsiBlast_PDB
64.52
39%
-31
- C2 -
2EL8
-
-
72
Fugue
62.14
40%
-15
- C2 -
2EL8
Calc...
71
HHSearch
52.38
25%
-28
- C2 -
3US4
Calc...
3
PsiBlast_PDB
49.09
28%
-123
- C2 -
2EOB
-
-
67
HHSearch
49.01
22%
-4
- C2 -
2CRH
Calc...
70
HHSearch
48.17
22%
-4
* C2 *
2CIA
Calc...
60
HHSearch
47.48
22%
-11
- C- -
3EAZ
-
CSK_HUMAN
-
62
HHSearch
46.36
16%
-61
- C2 -
2Y3A
Calc...
54
HHSearch
44.59
22%
-38
- C2 -
2OZO
Calc...
ZAP70_HUMAN
69
HHSearch
44.31
20%
-8
- C2 -
4FL3
Calc...
KSYK_HUMAN
64
HHSearch
44.29
16%
-17
- C2 -
2MK2
Calc...
SHIP2_HUMAN
68
HHSearch
44.20
26%
-0
- C2 -
1RJA
Calc...
PTK6_HUMAN
55
HHSearch
42.31
22%
32
- C2 -
1JU5
Calc...
CRK_HUMAN
61
HHSearch
42.25
18%
-23
- C2 -
1KA6
Calc...
SH21A_HUMAN
65
HHSearch
42.01
19%
18
- C2 -
3PS5
Calc...
PTN6_HUMAN
59
HHSearch
41.53
21%
-2
- C2 -
2IUG
Calc...
77
Fugue
41.25
16%
-37
- C2 -
3GXW
Calc...
SPT6_CANGA
58
HHSearch
41.25
19%
19
- C2 -
2LNW
Calc...
73
Fugue
41.24
27%
37
- C2 -
2PLD
Calc...