@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0620: (2017-12-25 )
MISNKVDITLANFTVTDERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKLQKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CYS_C_3(1XT8)
?
[Raw transfer]




CYS_C_3(1XT8)
?
[Raw transfer]




CYS_C_3(1XT8)
?
[Raw transfer]




CYS_C_17(2YJP)
?
[Raw transfer]




CYS_B_14(2YJP)
?
[Raw transfer]




CYS_B_14(2YJP)
?
[Raw transfer]




CYS_A_4(2YJP)
?
[Raw transfer]




CYS_A_4(2YJP)
?
[Raw transfer]




21 PsiBlast_CBE 93.6956% -81 - C5 -1XT8 3.6 ?
63 HHSearch 93.2855% -81 - C5 -1XT8 3.6 ?
23 PsiBlast_CBE 93.1354%-104 - C5 -2YJP 2.9 ?
1 PsiBlast_PDB 92.5556% -79 - C5 -1XT8 3.4 ?
22 PsiBlast_CBE 92.1354%-107 - C5 -2YJP 3.5 ?
2 PsiBlast_PDB 91.4554%-102 - C5 -2YJP 3.0 ?
61 HHSearch 90.4455%-100 - C5 -2YJP 2.9 ?
62 HHSearch 88.9355%-100 * C5 *2YJP 3.0 ?
65 HHSearch 72.7426% -97 - C5 -5LOM - ? -
64 HHSearch 69.1926% -94 - C5 -5LOM - ? -
8 PsiBlast_PDB 66.4033% -50 - C5 -4YMX - ? -
24 PsiBlast_CBE 65.7933% -46 - C5 -4YMX - ? -
73 HHSearch 65.3529% -6 - C5 -5EYF - ? -
5 PsiBlast_PDB 64.2133% 15 - C5 -5EYF - ? -
4 PsiBlast_PDB 63.0340% 75 - C5 -4ZV2 - ? -
75 HHSearch 62.6228% -25 - C5 -3VVF - ? -
72 HHSearch 62.5621% 24 - C5 -4C0R - ? -
26 PsiBlast_CBE 62.4732% 26 - C5 -3VVE - ? -
11 PsiBlast_PDB 62.4732% 31 - C5 -3VV5 - ? -
3 PsiBlast_PDB 62.2940% 80 - C5 -4ZV1 - ? -