@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0783: (2017-12-29 )
MIYFDNSATTKPYPEALETYMQVASKILGNPSSLHRLGDQATRILDASRQQIADLIGKKSDEIFFTSGGTEGDNWLIKGVAFEKAQFGKHIIVSAIEHPAVKESALWLKSQGFEVDFAPVDKKGLVDVEALAGLIRHDTILVSIMAVNNEIGSIQPIEAISEFLADKPTISFHVDAVQALAKIPTEKYLTERVDCATFSSHKFHGVRGVGFVYIKSGKKITPLLTGGGQERDYRSTTENVAGIAATAKALRLSMEKLDIFRSKTGQMKAVIRQALLNYPDIFVFSDEENFAPHILTFGIKGVRGEVIVHAFEDYDIFISTTSACSSKAGKPAGTLIAMGVDKDKAKSAVRLSLDLENDMSQVEQFLTKLKLIYNQTRKVR

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_5(4R5F)
ISCS2_ARCFU
[Raw transfer]



ALA_A_4(5B87)
?
[Raw transfer]



ALA_B_8(5B89)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_5(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



GOL_B_13(5FT6)
CSDA_ECOLI
[Raw transfer]



SLP_B_8(3A9Z)
SCLY_RAT
[Raw transfer]



IPA_A_4(5B7U)
?
[Raw transfer]



CYS_B_4(3A9Y)
SCLY_RAT
[Raw transfer]



CSS_F_6(1ELU)
?
[Raw transfer]
35 HHSearch 90.4235% -91 - C1 -4HVK - ISCS2_ARCFU -
36 HHSearch 89.1935% -84 * C1 *4EB5 - ISCS2_ARCFU -
38 HHSearch 86.3439% -36 - C1 -1EG5 3.6 ?
37 HHSearch 84.7039% -33 - C1 -1ECX 3.9 ?
2 PsiBlast_PDB 79.5039% -18 - C1 -1EG5 3.6 ?
21 PsiBlast_CBE 79.2940% -19 - C1 -1ECX 3.9 ?
1 PsiBlast_PDB 78.8840% -20 - C1 -1ECX 3.9 ?
10 PsiBlast_PDB 78.5734% 0 - C- -5KZ5 - NFS1_HUMAN -
60 Fugue 76.3839% 14 - C1 -1ECX 3.7 ?
7 PsiBlast_PDB 76.0535% -4 - C1 -4EB7 - ISCS2_ARCFU -
6 PsiBlast_PDB 75.6035% -3 - C1 -4EB5 - ISCS2_ARCFU -
40 HHSearch 74.8432% 3 - C1 -4ISY - ISCSL_MYCTU -
24 PsiBlast_CBE 74.5235% 1 - C1 -4EB5 - ISCS2_ARCFU -
8 PsiBlast_PDB 74.2235% 3 - C1 -4HVK - ISCS2_ARCFU -
61 Fugue 74.2032% -0 - C1 -4ISY - ISCSL_MYCTU -
23 PsiBlast_CBE 73.7035% 0 - C1 -4EB7 - ISCS2_ARCFU -
5 PsiBlast_PDB 73.5335% 3 - C1 -4R5F 4.2 ISCS2_ARCFU
25 PsiBlast_CBE 68.4633% -75 - C1 -5USR - ? -
14 PsiBlast_PDB 68.1031% -8 - C1 -3A9Z 4.0 SCLY_RAT
32 PsiBlast_CBE 67.2331% -7 - C1 -3A9X 3.7 SCLY_RAT
30 PsiBlast_CBE 66.2431% 11 - C1 -3A9Z 3.7 SCLY_RAT
4 PsiBlast_PDB 65.1638% 20 - C1 -3LVK 3.5 ISCS_ECO57
31 PsiBlast_CBE 64.7631% 12 - C1 -3A9Y 3.0 SCLY_RAT
22 PsiBlast_CBE 64.2038% 21 - C1 -3LVJ 3.9 ISCS_ECO57
3 PsiBlast_PDB 64.0738% 20 - C1 -3LVJ 4.1 ISCS_ECO57
13 PsiBlast_PDB 63.7731% 4 - C1 -3A9X 4.4 SCLY_RAT
29 PsiBlast_CBE 61.6332% -20 - C1 -3VAX 3.8 ?
12 PsiBlast_PDB 60.7132% -22 - C1 -3VAX 3.8 ?
39 HHSearch 59.6431% -10 - C1 -3VAX 3.8 ?