@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKS2: (2017-10-28 )
MSSAVVVSSENLDGQQQSSSTPASPAAEKVNLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIKAPEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVGQVADRTRRAEQWQKKVAQRQEILRTQG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5AD_A_7(5HR6)
RLMN_ECOLI
[Raw transfer]



5AD_B_13(5HR7)
RLMN_ECOLI
[Raw transfer]



SF4_A_3(3RFA)
RLMN_ECOLI
[Raw transfer]



SF4_A_3(3RFA)
RLMN_ECOLI
[Raw transfer]



SF4_A_15(5HR7)
RLMN_ECOLI
[Raw transfer]



SF4_A_3(3RF9)
RLMN_ECOLI
[Raw transfer]



SF4_B_4(4PL1)
?
[Raw transfer]



SF4_B_4(3RF9)
RLMN_ECOLI
[Raw transfer]



SF4_B_13(5HR6)
RLMN_ECOLI
[Raw transfer]



SF4_A_3(3RFA)
RLMN_ECOLI
[Raw transfer]



SF4_A_6(5HR6)
RLMN_ECOLI
[Raw transfer]



SF4_A_6(4PL1)
?
[Raw transfer]



SF4_B_12(5HR7)
RLMN_ECOLI
[Raw transfer]
49 Fugue 97.0959%-126 - C4 -3RFA 3.8 RLMN_ECOLI
21 PsiBlast_CBE 96.8858%-121 - C4 -3RF9 3.8 RLMN_ECOLI
1 PsiBlast_PDB 96.8658%-125 - C4 -3RF9 3.8 RLMN_ECOLI
2 PsiBlast_PDB 96.6358%-124 - C4 -3RFA 3.8 RLMN_ECOLI
26 HHSearch 96.2459%-124 - C4 -3RFA 3.8 RLMN_ECOLI
5 PsiBlast_PDB 96.2058%-108 - C4 -4PL1 3.7 ?
4 PsiBlast_PDB 96.1058%-105 - C4 -5HR6 5.3 RLMN_ECOLI
23 PsiBlast_CBE 95.3558%-124 - C4 -4PL1 3.6 ?
22 PsiBlast_CBE 95.2758%-107 - C4 -5HR6 3.4 RLMN_ECOLI
3 PsiBlast_PDB 94.7458%-108 - C4 -5HR7 5.2 RLMN_ECOLI
24 PsiBlast_CBE 94.3858%-106 - C4 -5HR7 3.5 RLMN_ECOLI
51 Fugue 44.6820% -22 - C4 -3C8F - PFLA_ECOLI -
34 HHSearch 43.7211% -49 - C4 -4U0O - LIPA2_THEEB -
30 HHSearch 42.2718% -16 * C4 *3C8F - PFLA_ECOLI -
33 HHSearch 41.2411% -47 - C4 -4U0P - LIPA2_THEEB -
31 HHSearch 41.1320% -5 - C4 -2FB2 - MOAA_STAA8 -
32 HHSearch 40.8919% -10 - C4 -1TV8 - MOAA_STAA8 -
39 HHSearch 40.6717% -19 - C4 -5FF3 - HYDE_THEMA -
40 HHSearch 39.5321% -10 - C- -3CAN - ? -
36 HHSearch 38.2211% -33 - C4 -5EXK - LIPA_MYCTU -