@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1B7: (2017-12-19 )
MEEESMRIACYGVRPNEIDFFEKLNIYHYDLSLYEELLTHDNIVSAKDHDAVLLRGNCIADETNLAKMQEYGIRYVFTRTVGVNHIDLQAAADFGMTVARVPSYSPNAIAELSLTFAMMLLRNTAYTTIRTSFKDFRVDEQMFSREIRNCTVGIIGTGRIGLTEAVLFKGLGAKVIGYDIHQTEAAKKVLTFHSLEELLAKSDIVSIHVPHIPGENDQMINEGFLAQMKKGSILINTARGELQDNEAILRALKSNHLAGFATDVFANETEVFFRSFKPWETIPDPAIQQLVEMYPRVLVTPHVGSNTDEALSNMISTSFENFREIIETGKTKNEVSLPKARQLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_G_7(2P9C)
SERA_ECOLI
[Raw transfer]




NAI_F_6(2P9G)
SERA_ECOLI
[Raw transfer]




NAD_E_5(1J49)
LDHD_LACDA
[Raw transfer]




NAD_A_4(1DXY)
DHD2_LACPA
[Raw transfer]




GOL_B_14(3WWY)
?
[Raw transfer]




GOL_A_3(3K5P)
?
[Raw transfer]




COI_A_5(1DXY)
?
[Raw transfer]




NHE_E_5(2CUK)
?
[Raw transfer]




COI_A_5(1DXY)
DHD2_LACPA
[Raw transfer]




GLV_A_23(5AOV)
GYAR_PYRFU
[Raw transfer]




1 PsiBlast_PDB 83.8546% 3 - C2 -1XDW - ? -
35 PsiBlast_CBE 77.7633% -30 - C2 -2YQ5 - ? -
10 PsiBlast_PDB 76.0233% -28 - C2 -2YQ4 - ? -
2 PsiBlast_PDB 75.9435% -7 - C2 -1DXY 10.1 DHD2_LACPA
89 HHSearch 75.8935% -18 - C2 -1DXY - DHD2_LACPA -
11 PsiBlast_PDB 75.1933% -28 - C2 -2YQ5 - ? -
36 PsiBlast_CBE 74.6633% -33 - C2 -2YQ5 - ? -
29 PsiBlast_CBE 73.0932% -11 - C2 -4ZGS - ? -
17 PsiBlast_PDB 73.0530% -8 - C2 -3WWY - ? -
26 PsiBlast_CBE 72.5132% -15 - C2 -4ZGS - ? -
28 PsiBlast_CBE 72.4532% -15 - C2 -4ZGS - ? -
31 PsiBlast_CBE 72.3032% -7 - C2 -4ZGS - ? -
22 PsiBlast_CBE 72.1033% -11 * C2 *1J49 10.3 LDHD_LACDA
27 PsiBlast_CBE 72.0532% -16 - C2 -4ZGS - ? -
3 PsiBlast_PDB 71.2733% -8 - C2 -2DLD - LDHD_LACHE -
32 PsiBlast_CBE 71.2632% -14 - C2 -4ZGS - ? -
6 PsiBlast_PDB 71.2232% -16 - C2 -4ZGS - ? -
30 PsiBlast_CBE 71.1132% -12 - C2 -4ZGS - ? -
102 Fugue 70.9723% -84 - C2 -2O4C - PDXB_PSEAE -
5 PsiBlast_PDB 70.0033% -10 - C2 -1J4A - LDHD_LACDA -