@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2241: (2016-04-02 )
MFTINTKSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIANQTDKLSSPKKLAETRTKLKETILDLVYLGVNIEEIHKLADEYSQDIIGGDVVEG
Atome Classification :
(20 SA)
--.........10-........20........30........40........50........60........70........80........90.--.......100.......110.......120.......130----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--
M
F
TINTKSQL
P
-
I
Y
E
Q
I
V
Q
K
I
K
E
Q
V
V
K
G
V
L
QE
G
E
K
I
L
S
I
R
E
F
A
S
RIGVN
P
N
T
V
S
K
A
Y
Q
E
L
ER
Q
E
V
I
I
T
V
KGK
G
T
F
I
ANQTDKLS
S
P
K
K
L
A
E
T
R
--
T
K
L
K
E
T
I
L
D
L
V
Y
LGV
N
I
E
E
I
H
K
L
A
D
E
Y
S
Q
D
IIGGDVVEG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.38
100%
-105
- C5 -
4HAM
6
?
A:
[5-134]
---
F
T
I
N
T
K
S
Q
L
P
-
I
Y
E
Q
I
V
Q
K
I
K
E
Q
V
V
K
G
V
L
Q
E
G
E
K
I
L
S
I
R
E
F
A
S
R
I
G
V
N
P
N
T
V
S
K
A
Y
Q
E
L
E
R
Q
E
V
I
I
T
V
K
G
K
G
T
F
I
A
N
Q
T
D
K
L
S
S
P
K
K
L
A
E
T
R
--
T
K
L
K
E
T
I
L
D
L
V
Y
L
G
V
N
I
E
E
I
H
K
L
A
D
E
Y
S
Q
D
I
I
G
G
D
V
V
E
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
68.03
36%
-90
- C5 -
3BY6
1
?
A:
[3-120]
----
A
M
A
I
T
Q
K
R
P
-
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
T
F
I
T
G
N
T
A
S
V
K
N
-
S
N
Q
N
R
L
L
--
A
D
L
S
Q
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
D
I
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
67.70
27%
-99
- C5 -
4MGR
3
GABR_BACSU
A:
[2-469]
D
I
T
I
T
L
D
R
S
E
Q
A
D
Y
I
Y
Q
Q
I
Y
Q
K
L
K
K
E
I
L
S
R
N
L
L
P
H
S
K
V
P
S
K
R
E
L
A
E
N
L
K
V
S
V
N
S
V
N
S
A
Y
Q
Q
L
L
A
E
G
Y
L
Y
A
I
E
R
K
G
F
F
V
E
E
L
D
M
F
S
A
E
E
H
P
P
F
A
L
P
--
D
D
L
K
E
I
H
I
D
Q
-------------
S
D
W
I
S
F
S
H
M
S
S
D
T
D
H
F
P
I
K
S
W
F
R
C
E
Q
K
A
A
S
R
S
YRTLGDMSHPQGI
Y
E
V
R
A
A
I
T
R
L
I
S
L
T
RG
V
K
C
R
PEQ
M
I
I
G
AG
T
Q
V
L
M
Q
L
L
T
E
L
L
PKE
A
V
Y
A
M
E
EPGY
R
R
M
Y
Q
L
L
K
N
A
G
K
Q
V
K
T
I
M
L
D
EKGMS
I
A
E
I
T
R
QQPD
V
L
V
T
TPSHQFPSG
T
I
M
P
V
S
R
R
I
Q
L
L
N
W
A
A
EEPR
R
Y
I
I
E
D
D
Y
DSEFTYDVDSIPALQSLDRFQN
V
I
Y
M
G
T
FSKSLLPG
L
R
I
S
Y
M
V
L
P
P
E
L
L
R
A
Y
K
Q
R
GYDLQTCS
S
L
T
Q
L
T
L
Q
E
F
I
E
S
G
E
Y
Q
K
H
I
K
K
M
K
Q
H
Y
K
E
K
R
E
R
L
I
T
A
L
E
A
EFSGE
V
T
V
K
G
A
NAGL
H
F
V
T
E
F
DTRRT
E
Q
D
I
L
S
H
A
A
G
L
Q
L
E
I
F
G
MSRFNLKENKRQTGR
P
A
L
I
I
G
F
ARLKEED
I
Q
E
G
V
Q
R
L
FKAVY
2
PsiBlast_PDB
67.27
41%
-91
- C5 -
3BY6
1
?
A:
[11-120]
------------
P
-
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
T
F
I
T
G
N
T
---
A
S
V
K
N
S
N
Q
N
R
L
L
A
D
L
S
Q
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
----
D
I
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
66.67
41%
-91
- C5 -
3BY6
1
?
C:
[11-120]
------------
P
-
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
T
F
I
T
G
N
T
---
A
S
V
K
N
S
N
Q
N
R
L
L
A
D
L
S
Q
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
----
D
I
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
66.15
36%
-131
- C5 -
4U0Y
3
YVOA_BACSU
C:
[4-78]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
66.00
41%
-80
- C5 -
3BY6
1
?
B:
[11-120]
------------
P
-
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
T
F
I
T
G
N
T
---
A
S
V
K
N
S
N
Q
N
R
L
L
A
D
L
S
Q
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
----
D
I
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
65.23
36%
-129
- C5 -
4U0Y
3
YVOA_BACSU
B:
[4-78]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
65.13
36%
-130
- C5 -
4U0Y
3
YVOA_BACSU
A:
[4-78]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
64.94
46%
-116
- C5 -
3NEU
-
?
A:
[13-77]
------------
P
-
I
Y
S
Q
I
S
D
W
M
K
K
Q
M
I
T
G
E
W
K
G
E
D
K
L
P
S
V
R
E
M
G
V
K
L
A
V
N
P
N
T
V
S
R
A
Y
Q
E
L
E
R
A
G
Y
I
Y
A
K
R
G
M
G
S
F
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
64.75
36%
-117
- C5 -
2WV0
1
YVOA_BACSU
D:
[1-75]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
64.67
36%
-121
- C5 -
2WV0
1
YVOA_BACSU
A:
[1-75]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
64.66
36%
-123
- C5 -
4WWC
4
YVOA_BACSU
B:
[4-88]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
64.43
47%
-121
- C5 -
4R1H
1
?
A:
[11-75]
------------
P
-
I
Y
K
Q
I
V
H
Y
I
H
T
E
I
V
T
G
T
Y
E
A
G
D
K
L
L
S
V
R
E
L
A
T
K
L
E
V
N
P
T
T
I
Q
R
A
Y
A
E
L
E
E
T
E
I
I
Y
T
V
R
G
T
G
K
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
64.32
36%
-121
- C5 -
2WV0
1
YVOA_BACSU
I:
[1-75]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
64.09
36%
-125
- C5 -
4WWC
4
YVOA_BACSU
A:
[4-108]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
64.01
36%
-130
- C5 -
4U0W
4
YVOA_BACSU
B:
[4-78]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
63.18
36%
-110
- C5 -
4U0Y
3
YVOA_BACSU
D:
[5-78]
----
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
62.98
36%
-113
- C5 -
2WV0
1
YVOA_BACSU
C:
[1-75]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
62.95
36%
-117
- C5 -
4U0V
2
YVOA_BACSU
B:
[4-78]
---
M
N
I
N
K
Q
S
P
I
P
-
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
T
F
V
S
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