@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu17360: (2016-06-27 )
MKHKVIVNHWEEICEDDSCYEYGTSIIVNGKELIREASIITALKAVLEEIGADVEIEETVESEKCCDSLRKKNLDY
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...---......10........20........-30....---..-..40.--...-....50..---.--.-....60........70.....--------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKH---K
V
I
V
N
H
W
E
E
ICEDD
S
C
Y
EYG
T
S
I
I
V
N
-
G
K
E
L
I
R
---
E
A
-
S
I
I
T
A
--
L
K
A
-
V
L
E
E
IGAD---
V
--
E
-
I
E
E
TV
E
S
E
K
C
C
D
S
L
R
K
KNLDY--------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
61.49
50%
-382
- C4 -
2NYI
-
?
A:
[155-176]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
T
A
--
L
S
R
-
V
E
E
E
F
G
V
D
---
I
--
D
-
L
E
E
V
V
------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.69
29%
-42
- C4 -
3BMX
3
NAGZ_BACSU
A:
[235-286]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
L
P
L
V
S
H
-
G
Q
E
R
L
R
---
E
V
-
E
L
Y
P
F
--
Q
K
A
-
I
--
D
A
G
A
D
---
M
--
V
-
M
T
A
H
V
Q
F
P
A
F
D
D
T
T
Y
K
S
K
L
D
---------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.51
29%
-25
- C4 -
4GYK
1
NAGZ_BACSU
A:
[239-290]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
L
P
L
V
S
H
-
G
Q
E
R
L
R
---
E
V
-
E
L
Y
P
F
--
Q
K
A
-
I
--
D
A
G
A
D
---
M
--
V
-
M
T
A
H
V
Q
F
P
A
F
D
D
T
T
Y
K
S
K
L
D
---------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.27
29%
-26
- C4 -
4GYJ
1
NAGZ_BACSU
A:
[239-290]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
L
P
L
V
S
H
-
G
Q
E
R
L
R
---
E
V
-
E
L
Y
P
F
--
Q
K
A
-
I
--
D
A
G
A
D
---
M
--
V
-
M
T
A
H
V
Q
F
P
A
F
D
D
T
T
Y
K
S
K
L
D
---------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.23
29%
-32
- C4 -
3NVD
3
NAGZ_BACSU
A:
[235-286]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
L
P
L
V
S
H
-
G
Q
E
R
L
R
---
E
V
-
E
L
Y
P
F
--
Q
K
A
-
I
--
D
A
G
A
D
---
M
--
V
-
M
T
A
H
V
Q
F
P
A
F
D
D
T
T
Y
K
S
K
L
D
---------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
56.98
29%
-36
- C4 -
3LK6
-
NAGZ_BACSU
A:
[209-260]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
L
P
L
V
S
H
-
G
Q
E
R
L
R
---
E
V
-
E
L
Y
P
F
--
Q
K
A
-
I
--
D
A
G
A
D
---
M
--
V
-
M
T
A
H
V
Q
F
P
A
F
D
D
T
T
Y
K
S
K
L
D
---------------------------------------------------------------------------------------------------------------------------------
47
Fugue
55.49
16%
-123
- C3 -
3FBL
1
Y132_AFV1Y
A:
[1-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
---
H
K
L
R
L
A
I
K
E
I
C
K
T
D
G
I
P
N
I
K
W
G
M
Y
I
A
F
G
E
K
L
L
K
---
S
Y
-
L
K
M
K
A
--
G
S
A
-
S
S
D
M
I
A
E
Y
---
I
N
N
A
-
I
S
A
F
S
S
R
T
G
I
S
Q
E
T
A
Q
K
I
A
D
F
I
T
S
N
Y---------------------------------------------------------------------------------------------------------------------------
46
Fugue
54.83
18%
-64
- C3 -
2KCL
-
?
A:
[1-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDPED
P
F
T
R
Y
A
L
A
Q
E
H
L
K
H
DN
A
S
R
A
L
A
L
F
E
E
L
V
E
T
D
P
--
D
Y
V
G
T
Y
Y
H
L
-
G
K
L
Y
E
R
L
DR
T
D
-
D
A
I
D
T
--
Y
A
Q
-
G
I
E
V
A
R
E
E
GT
Q
K
--
D
-
L
S
E
L
Q
D
A
K
L
K
A
E
G
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------
51
Fugue
53.06
16%
-66
- C3 -
1VR5
16
?
A:
[12-547]
HERNK
T
L
Y
W
G
GALWSPPSNWNPFTPWNAVAGTIGLVYEPL
F
L
Y
D
PLND
K
F
E
P
W
LAE
K
G
E
W
VSNN
E
Y
V
L
T
L
R
K
GLRWQDGVPLT
A
D
D
V
V
F
T
F
E
I
A
K
K
Y
TGISYSPVWNWLG
R
I
E
R
VDER
T
L
K
F
V
F
SDPR
Y
Q
E
W
K
Q
M
L
I
N
T
P
I
V
P
KHIWENKT
E
E
E
V
L
Q
AANENPVGSGPYYVESWADD
R
C
V
F
K
K
NGNW
W
G
I
R
E
LG
Y
D
P
K
P
E
R
I
V
E
L
R
V
LS
N
N
V
A
V
G
M
L
M
K
GELDWSNFFLPG
V
P
V
L
K
K
A
Y
G
I
V
T
WYENAPYMLPA
N
T
A
G
I
Y
I
NVNKYPLSI
P
E
F
R
R
A
M
A
Y
A
IN
P
E
K
I
V
T
RAYENM
V
T
A
A
N
PAGILPL
P
G
Y
M
K
Y
YP
K
E
V
V
D
K
Y
G
F
K
YD
P
E
M
A
K
K
I
L
D
E
L
---
G
F
K
D
V
N
K
D
G
F
R
E
D
P
N
G
K
P
F
K
L
T
I
E
C
P
-
Y
G
W
--
T
---
D
W
M
V
S
I
Q
S
--
I
A
E
-
D
L
V
K
V
G
I
N
---
V
--
E
-
P
K
-
Y
P
D
Y
S
K
Y
A
D
D
L
Y
G
G
K
F
D
L
I
L
N
NFTTGVSATI
W
S
Y
F
N
G
V
FYPDAVESEYSYSGNFGKYAN
P
E
V
E
T
L
L
D
E
L
N
R
SND
D
A
K
I
K
E
V
V
A
K
L
S
E
I
L
L
K
D
LP
F
I
P
L
W
YNGA
W
F
Q
A
S
EAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK
45
Fugue
49.63
18%
-16
- C3 -
2DG5
2
?
B:
[1-190]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
T
H
Y
S
V
V
D
KDG
N
A
V
A
V
T
Y
TLNTTFGTGIVAGESG
I
L
L
N
NQMDDFSAKPGVPNVYG
L
V
G
G
DANAVGPNKRPLSSM
S
P
T
---
I
V
V
K
D
--------------
G
K
T
W
L
V
T
-
G
S
P
--
G
---
G
S
-
R
I
I
T
T
--
V
L
Q
M
V
V
N
S
I
D
Y
G
---
L
--
N
-
V
A
E
A
T
N
A
P
R
F
H
H
Q
W
L
P
D
E
L
R
V
EKGFS
P
D
T
L
K
L
L
E
A
K
GQK
V
A
L
K
E
A
M
G
S
T
Q
S
I
M
V
G
PDG
E
L
Y
G
A
S
D
PRSVD
D
L
T
A
G
Y-------------------------------------------------------------------------
53
Fugue
49.03
10%
-231
* C3 *
1ZV1
-
DSX_DROME
A:
[6-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
D
V
F
L
D
Y
C
Q
K
L
L
E
K
F
R
-----------------
Y
---
P
W
-
E
L
M
P
L
--
M
Y
V
-
I
L
K
D
A
D
A
N
---
I
--
E
E
A
S
R
R
I
E
E
G
Q
Y
V
V
N
E
Y
S
R
Q
H
N
L
--------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
48.10
32%
-86
- C4 -
4A7W
1
PYRH_HELPY
A:
[82-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
T
V
I
N
A
V
A
M
Q
E
-
A
L
E
H
I
G
L
D
---
T
--
R
-
V
Q
S
A
I
E
I
K
E
I
C
E
S
----------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
48.06
63%
-78
- C4 -
1CTF
-
RL7_ECOLI
A:
[59-74]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
L
K
K
-
A
L
E
E
A
G
A
E
---
V
--
E
-
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
48.04
37%
-19
- C5 -
3DBV
1
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
47.64
37%
-26
- C5 -
1DBV
1
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
47.54
37%
-27
- C5 -
2DBV
1
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
47.47
37%
2
- C5 -
2GD1
-
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
47.44
37%
-1
- C5 -
3CMC
3
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
47.01
31%
-131
- C4 -
1OBB
1
AGLA_THEMA
A:
[32-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
V
T
L
M
-
D
I
D
E
E
R
---
L
D
-
A
I
L
T
I
--
A
K
K
-
Y
V
E
E
V
G
A
D
---
L
--
K
-
F
E
K
T
M
------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
46.64
37%
-2
* C5 *
1GD1
1
G3P_GEOSE
O:
[61-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
N
L
V
V
N
-
G
K
E
I
I
V
---
K
A
-
E
-
R
D
P
--
E
N
L
-
A
W
G
E
I
G
V
D
---
I
--
V
-
V
E
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------