@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu26700: (2016-07-11 )
MTMTMTQQMITIAMVVLGTMLTRFLPFMIFPSGKPTPKYVQYLGKVLPSAVIGLLVIYCLKDVSLLSGSHGIPELVGAAAVVLLHLWKKNMLLSIAGGTVVYMVLVQLVF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.......10..-.....------.20........30..---------.----.....40--......-------..50....------..----------------..60---..---.-...----..70--.------.......80..----.....------.90---------.....--.---..100..----.-----....110-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT-M
T
M
T
Q
Q
M
I
T
I
A
-
M
V
V
L
G
------
T
M
L
T
R
F
L
P
F
M
I
FPSG---------K----P
T
P
K
Y
V
Q
--
Y
L
G
K
V
L
-------
P
S
A
V
I
G
L
L
------
V
I
----------------
Y
C
L
K
---
D
V
---
S
-
L
LS----GSHG--
I
------
P
E
L
V
G
A
A
A
V
V
L
----
L
H
L
W
K------K
N
M
---------
L
L
S
IA--G---
G
T
V
V
Y
M
V
----
L
-----
V
Q
L
VF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
69.09
27%
-179
- C5 -
2HEQ
-
YORP_BACSU
A:
[1-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
---------
D
----
P
L
P
K
Y
W
S
--
Y
P
---------------
V
G
L
A
------
V
E
----------------
I
N
N
N
---
A
--------------
R
Y
G
--
C
------
P
H
H
V
G
R
K
G
K
I
I
----
E
H
L
H
S
------
A
T
Y
---------
D
Y
A
V
S
D
E
T
---
G
D
I
T
Y
F
K
----
E
-----
H
E
L
T
P
L
K
GGLAYVLEHHHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
63.90
17%
-179
- C6 -
3WAJ
2
?
A:
[15-868]
SV
L
V
I
A
A
L
I
S
V
K
L
R
ILNP
W
N
S
V
F
TWTVRLGGN
D
P
W
Y
Y
Y
R
L
I
E
N
T
I
H
N
FPHRIWFDPFTYYP
Y
G
S
Y
T
HFG
P
F
L
V
Y
L
G
S
I
A
G
I
I
F
SATSG
E
S
L
R
A
V
L
A
F
I
P
A
I
G
G
V
L
A
I
L
P
V
Y
L
L
T
R
E
V
FD
K
R
A
A
V
I
A
A
F
L
I
A
I
VPG
Q
F
L
Q
R
S
ILGFNDH
H
I
W
E
A
F
W
Q
V
S
A
L
G
T
F
L
L
A
Y
N
RWKGHDLT
A
R
Q
M
A
Y
P
V
I
A
G
I
T
I
G
L
Y
V
L
S
WGAGF
I
I
A
P
I
I
L
A
F
M
F
F
A
F
V
L
AG
F
V
-
N
A
D
R
K
N
L
S
L
V
A
-
V
V
T
F
A
------
V
S
A
L
I
Y
L
P
F
A
F
N
Y
P
G
---------
F
----
S
T
I
F
Y
S
P
--
F
Q
L
L
V
L
-------
L
G
S
A
V
I
A
A
------
A
F
----------------
Y
Q
I
E
K
W
N
D
V
---
G
-
F
F
E
R
V
GL
G
R
K
G
--
M
------
P
L
A
V
I
V
L
T
A
L
I
----
M
G
L
F
F
------
V
L
T
---------
N
A
V
L
H
--
F
---
G
A
L
F
F
F
G
----
M
-----
A
G
I
L
Y
S
A
Y
R
F
L
KRRS
F
P
E
M
A
L
L
I
W
A
I
A
M
F
I
A
L
WGQNRFAYYF
A
A
V
S
A
V
Y
S
A
L
A
L
S
V
V
F
D
K
L
HFRVA
F
A
L
L
I
A
L
A
A
IY
P
T
Y
I
L
A
D
A
Q
S
S
Y
AGGPN
K
Q
W
Y
D
A
L
T
W
M
R
E
N
TPD
G
E
K
Y
D
E
Y
Y
L
QLYPTPQSNKEPFSYPFE
T
Y
G
V
I
S
W
WDY
G
H
W
I
E
A
V
AHRMPIANPFQAGIGNKYNNVPG
A
S
S
F
F
T
AEN
E
S
Y
A
E
F
V
A
E
K
L
NVK
Y
V
V
S
D
IEMETGK
Y
Y
A
M
A
V
W
A
E
GD
L
P
L
A
E
KY
Y
G
G
Y
F
Y
Y
S
PTG
T
F
G
Y
A
NSQWDIPLNSIIIP
L
R
I
P
S
E
L
Y
Y
S
T
M
E
A
K
L
HLFDGSGLSHYRMIYESDYP
A
E
W
K
S
Y
S
S
QVNLNN
E
S
Q
V
L
Q
T
A
L
Y
E
A
V
M
R
A
RYGVSPT
M
G
T
Q
E
V
L
Y
K
Y
A
Y
T
Q
LYEKKM
G
I
P
V
K
IAPSGY
V
K
I
F
E
R
V
K
G
A
V
V
T
G
K
V
S
A
NVT
E
V
S
V
N
A
T
I
K
T
NQN
R
T
F
E
Y
W
Q
T
V
E
V
K
NG
T
Y
T
V
V
L
PYSHNSDYPVKPIT
P
Y
H
I
K
A
GN
V
V
K
E
I
T
I
Y
E
S
Q
V
Q
N
G
E
I
I
Q
L
D
L
14
Fugue
62.90
16%
-75
* C5 *
1BWZ
-
?
?:
[131-274]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TANKFEK
N
Y
I
-
L
R
T
D
I
Q
T
V
L
C
G
-
A
V
S
M
G
------
N
------
P
H
C
V
V
Q
V
D
---------
D
----
I
Q
T
A
N
V
E
--
Q
L
G
P
L
L
E
S
HERFP
E
R
V
N
A
G
F
M
------
Q
I
----------------
I
N
K
E
---
H
I
---
K
-
L
R
V
----
Y
E
R
G
AG
E
------
T
Q
A
C
G
S
G
A
C
A
A
----
V
A
V
G
I
M
Q
GLLN
N
N
V
---------
Q
V
D
L
P
--
G
---
G
S
L
M
I
E
W
----
N
GVG
H
P
L
Y
M
T
G
E
A
T
H
I
Y
D
G
F
I
T
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
60.47
47%
-221
- C7 -
2V82
1
DGOA_ECOLI
A:
[127-149]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
P
S
S
---------
A
----
F
G
P
Q
Y
I
K
--
A
L
K
A
V
L
-------
P
S
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.65
47%
-212
- C7 -
4QCC
-
DGOA_ECOLI
A:
[127-149]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
P
S
S
---------
A
----
F
G
P
Q
Y
I
K
--
A
L
K
A
V
L
-------
P
S
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.36
47%
-222
- C7 -
2V81
-
DGOA_ECOLI
A:
[127-149]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
P
S
S
---------
A
----
F
G
P
Q
Y
I
K
--
A
L
K
A
V
L
-------
P
S
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
57.40
19%
-79
- C4 -
1GHL
-
LYSC_PHACO
A:
[0-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
K
V
Y
G
R
C
E
L
A
A
A
-
M
K
R
M
G
LDNYRG
Y
S
L
G
N
W
V
C
A
A
K
F
E
S
N
---------
F
----
N
T
G
A
T
N
R
--
N
T
-
D
---------
G
S
T
D
Y
G
I
L
------
Q
I
NSRWWCNDGRTPGSKN
L
C
H
I
---
P
C
---
S
-
A
L
L
----
S
S
D
I
--
T
------
A
S
V
N
C
A
K
K
I
V
S
DGNG
M
N
A
W
V
------
A
W
R
---------
K
H
C
K
G
--
T
---
D
V
N
V
W
I
R
----
G
-----
C
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
53.41
10%
-114
* C6 *
1YHU
-
?
D:
[1-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASCT
T
E
D
R
R
E
M
Q
L
M
W
G
N
V
W
S
-
A
Q
F
T
G
R
R
I
A
I
A
-
Q
A
V
F
K
------
D
L
F
A
N
V
P
D
A
V
G
L
F
G
A
VKGDE----
V
----
N
S
N
E
F
K
A
--
H
C
I
R
V
V
-------
N
G
L
D
S
S
I
G
------
L
L
SD
P
A
------------
T
L
N
E
---
Q
L
---
S
-
H
L
A
----
T
Q
H
K
--
A
------
R
S
G
V
T
K
G
G
F
S
A
----
I
A
Q
S
F
------
L
R
V
---------
M
P
Q
V
A
--
S
CFN
P
D
A
W
S
R
C
----
F
-----
N
R
I
T
T
G
M
T
EPLPA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
42.99
10%
-35
- C6 -
1ASH
2
GLB_ASCSU
A:
[1-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
N
K
T
R
E
L
C
M
K
S
L
E
H
A
K
-
V
D
T
S
N
E
A
R
Q
D
G
-
I
D
L
Y
K
------
H
M
F
E
N
Y
P
P
L
R
K
Y
F
K
S
REEYT
A
E
D
V
Q
----
N
D
P
F
F
A
K
--
Q
G
Q
K
I
L
-------
L
A
C
H
V
L
C
A
T
YDD--
R
E
----------------
T
F
N
A
---
Y
T
---
R
-
E
L
L
----
D
R
H
A
--
R
D
HVHMP
P
E
V
W
T
D
F
W
K
L
F
----
E
E
Y
L
G
------
K
K
T
---------
T
L
D
E
P
--
T
---
K
Q
A
W
H
E
I
----
G
-----
R
E
F
A
K
E
I
N
K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
42.03
12%
-49
- C6 -
4ZVA
1
DOSC_ECOLI
A:
[1-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
M
K
D
E
W
T
G
L
V
E
Q
A
D
-
P
P
I
R
A
K
A
A
E
I
A
-
V
A
H
A
H
------
Y
L
S
I
E
F
Y
R
I
V
R
I
D
P
H
---------
A
E
E
F
L
S
N
E
Q
V
E
R
--
Q
L
K
S
A
M
-------
E
R
W
I
I
N
V
L
S
AQVDD
V
E
----------------
R
L
I
Q
---
I
Q
---
H
-
T
V
A
----
E
V
H
A
--
R
I
GIP--
V
E
I
V
E
M
G
F
R
V
L
----
K
K
I
L
Y
------
P
V
I
F
S
SDYS
A
A
E
K
L
Q
V
Y
--
H
---
F
S
I
N
S
I
D
----
I
-----
A
M
E
V
M
T
RA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.07
18%
-128
- C7 -
5DA0
1
?
A:
[317-386]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
P
L
L
V
Q
I
-------
P
M
A
A
L
V
A
V
------
M
M
----------------
V
V
A
I
---
S
T
F
DW
G
S
L
R
-------
F
P
--
K
------
G
E
T
V
V
M
L
A
T
V
A
----
V
T
V
F
T
------
H
D
L
---------
S
L
G
V
L
--
I
---
G
V
V
L
S
A
L
----
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
35.54
18%
-211
- C7 -
2KV5
-
?
A:
[10-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
------
P
I
F
V
G
L
V
L
E
M
I
----
S
R
V
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
35.08
31%
-142
- C3 -
8TFV
-
THAN_PODMA
A:
[1-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
K
---------
K
----
P
V
P
I
I
Y
C
NR
R
T
G
K
C
Q
-------
R
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.30
17%
-186
- C7 -
4B19
-
?
A:
[9-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
------
P
V
I
S
G
C
A
I
A
F
F
----
S
Y
W
L
S
------
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
28.51
8%
-205
* C7 *
3J27
-
?
B:
[38-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
H
P
---------
G
F
T
I
M
--
A
---
A
I
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
23.90
12%
-42
- C6 -
3FN2
1
?
A:
[6-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
M
Q
R
D
N
Q
K
T
L
A
V
Y
M
F
----------------------------------
E
----
E
I
N
R
D
V
E
--
Y
L
S
G
R
L
-------
S
E
K
E
L
K
D
K
------
Y
R
----------------
Y
Y
G
R
---
G
Y
---
V
-
R
I
T
----
D
K
D
G
--
Q
------
V
I
T
Y
E
D
G
S
V
Q
D
----
K
T
V
F
L
------
T
N
E
---------
G
A
N
K
L
--
G
---
W
K
L
E
F
L
I
D
E
K
M
F
-----
E
E
E
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
20.08
21%
-105
- C7 -
2LX0
-
?
A:
[2-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
T
---------
I
W
E
V
I
--
A
---
G
L
V
A
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
16.54
18%
13
- C2 -
5IRE
-
?
B:
[38-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
P
---------
G
F
A
L
A
--
A
---
A
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
14.23
29%
0
- C- -
1JB0
-
PSAM_THEEB
M:
[1-14]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
-
L
T
D
T
Q
V
Y
V
A
L
V
-
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
12.82
31%
0
- C- -
1S5L
-
PSBX_THEEB
X:
[17--13]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
F
---------
F
I
G
L
L
--
S
---
G
A
V
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------