@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 085_tII_WHEAT: (2014-05-01 )
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-----.--....-..10----------....--.--..--.--.-20-----------........-----------30----------.-----.-....---------...40---...------------....--..50-...-.....---.-----------60....---------..------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----
Q
--
A
S
Q
L
-
A
V
C
-----------
A
S
A
I
--L--SG--A--K-P
S
-----------
G
E
C
C
GNLR-----------A-----------Q-----Q-
G
C
F
C
---------QYAK----DPT------------Y
G
Q
Y
--IRS--PHA-R
D
T
L
T
---S-----------CGLAVP---------HC------------------------------------------------------------------------------------
1
HHSearch
95.01
100%
-123
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
Q
L
-
A
V
C
-----------
A
S
A
I
--
L
--
S
G
--
A
--
K
-
P
S
-----------
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
---------
Q
Y
A
K
----
D
P
T
------------
Y
G
Q
Y
--
I
R
S
--
P
H
A
-
R
D
T
L
T
---
S
-----------
C
G
L
A
V
P
---------
H
C
------------------------------------------------------------------------------------
2
HHSearch
78.18
60%
-139
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[2-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
-----
N
--
A
G
Q
L
-
T
V
C
-----------
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
---------
Q
F
A
K
----
D
P
R
------------
Y
G
R
Y
--
V
N
S
--
P
N
A
-
R
K
A
V
S
---
S
-----------
C
G
I
A
L
P
---------
T
C
------------------------------------------------------------------------------------
26
SP3
77.94
59%
-139
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
-----
N
--
A
G
Q
L
-
T
V
C
-----------
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
---------
Q
F
A
K
----
D
P
R
------------
Y
G
R
Y
--
V
N
S
--
P
N
A
-
R
K
A
V
S
---
S
-----------
C
G
I
A
L
P
---------
T
C
H-----------------------------------------------------------------------------------
16
Fugue
77.94
59%
-139
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
-----
N
--
A
G
Q
L
-
T
V
C
-----------
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
---------
Q
F
A
K
----
D
P
R
------------
Y
G
R
Y
--
V
N
S
--
P
N
A
-
R
K
A
V
S
---
S
-----------
C
G
I
A
L
P
---------
T
C
H-----------------------------------------------------------------------------------
17
Fugue
67.99
31%
-120
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AID
L
C
GM---
S
--
Q
D
E
L
-
N
E
C
-----------
K
P
A
V
--
S
--
K
E
NP
T
--
S
-
P
S
-----------
Q
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-----
F
-
A
C
L
C
---------
G
Y
K
N
----
S
P
W
------------
L
G
S
F
G-
V
D
P
--
E
L
A
-
S
A
L
P
K
---
Q
-----------
C
G
L
A
N
A
P--------
T
C
------------------------------------------------------------------------------------
35
SP3
66.57
22%
-154
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
M
L
-
N
H
C
-----------
G
M
Y
L
--
M
KN
L
G
--
E
--
R
-
S
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
C
M
C
---------
P
A
I
M
M
M
L
N
E
P
M
------------
W
I
R
M
--
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
---
E
-----------
C
N
L
M
S
Q
---------
P
C
QM----------------------------------------------------------------------------------
3
HHSearch
61.41
30%
-109
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
E
L
-
N
E
C
-----------
K
P
A
V
--
S
--
K
E
--
N
PT
S
-
P
S
-----------
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
C
L
C
---------
G
Y
K
N
----
S
P
W
------------
L
G
S
F
G-
V
D
P
--
E
L
A
-
S
A
L
P
K
---
Q
-----------
C
G
L
A
N
A
P--------
T
C
------------------------------------------------------------------------------------
8
HHSearch
60.31
28%
-88
- C4 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
I
-
A
P
C
-----------
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
S
-----------
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
-----------
L
K
----
N
A
A
-------------
A
G
V
SG
L
N
A
--
G
N
A
-
A
S
I
P
S
---
K
-----------
C
G
V
S
I
P
-----------------------------------------------------------------------------------------------
27
SP3
60.15
25%
-85
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
S
C
-----
G
Q
V
A
S
A
I
-
A
P
C
-----------
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
S
-----------
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
A
-------------
A
R
----
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG
L
N
A
--
G
N
A
-
A
S
I
P
S
---
K
-----------
C
G
V
S
I
P
YTISTST--
D
C
SRVN--------------------------------------------------------------------------------
9
HHSearch
59.63
35%
-103
- C4 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
-
A
P
C
-----------
L
A
Y
L
--
R
--
N
T
--
G
----
P
L
-----------
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
-----------
L
K
----
S
A
A
-------------
G
A
I
SG
I
N
L
--
G
K
A
-
A
G
L
P
S
---
T
-----------
C
G
V
N
I
P
-----------------------------------------------------------------------------------------------
18
Fugue
57.47
30%
-82
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
D
C
-----
G
H
V
D
S
L
V
-
R
P
C
-----------
L
S
Y
V
--
Q
--
G
G
--
P
---G
P
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
C
N
C
---------
L
K
G
I
----
A
R
G
------------
I
H
N
L
--
N
-
E
--
D
N
A
-
R
S
I
P
P
---
K
-----------
C
G
--
V
N
LP
Y
T
I
S
LNI
D
C
SRV---------------------------------------------------------------------------------
6
HHSearch
54.03
28%
-86
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
L
-
A
P
C
-----------
I
P
Y
V
--
R
--
G
G
--
G
--
A
-
V
P
-----------
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
-----------
L
K
----
Q
L
S
-------------
A
S
V
PG
V
N
P
--
N
N
A
-
A
A
L
P
G
---
K
-----------
C
G
V
S
I
P
-----------------------------------------------------------------------------------------------
5
HHSearch
51.39
23%
-75
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
N
L
-
A
Q
C
-----------
I
G
F
L
--
Q
--
K
G
--
G
--
V
-
V
P
-----------
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
---------
L
K
A
A
----
A
G
A
------------
V
R
-
G
--
I
N
P
--
N
N
A
-
E
A
L
P
G
---
K
-----------
C
G
V
N
I
P
-----------------------------------------------------------------------------------------------
11
HHSearch
50.67
23%
-101
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
-
S
I
C
-----------
L
N
I
L
GG
S
--
L
G
--
T
-----
V
-----------
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
---------
I
Q
L
R
----
A
--------------
L
G
I
---
L
N
L
--
N
R
N
L
Q
L
I
L
N
---
S
-----------
C
G
R
S
Y
P
---------
S
-------------------------------------------------------------------------------------
4
HHSearch
49.13
28%
-54
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
-
R
P
C
-----------
L
S
Y
V
--
Q
--
G
G
--
P
--
G
-
P
S
-----------
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
---------
L
K
G
I
----
A
R
G
------------
I
H
-
N
--
L
N
E
--
D
N
A
-
R
S
I
P
P
---
K
-----------
C
G
V
N
L
P
-----------------------------------------------------------------------------------------------
19
Fugue
48.75
29%
-81
* C2 *
1CWV
-
A:
[393-492]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
R
W
I
Y
D
GGRSLVS
S
L
E
A
S
R
Q
C
-----
Q
--
G
S
D
M
S
A
V
L
-----------
E
S
S
R
--
A
--
T
N
--
G
--
T
-
R
A
-----------
P
D
--
G
T
L
W
-----------
G
-----------
E
-----
W
-
G
S
L
T
---------
A
Y
S
S
----
D
W
Q
------------
S
G
E
Y
--
W
V
K
--
K
T
S
-
T
D
F
E
T
---
M
N
MDTG
A
L
Q
P
G
P
A
Y
L
A
F
P
---------
L
C
A
L
S
I--------------------------------------------------------------------------------
21
Fugue
48.13
21%
-109
* C6 *
2KSS
-
CARS_MYXXA
A:
[21-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
-----
Q
--
D
P
S
L
-
I
I
C
H
DVDGAPVRIG
A
K
V
K
--
V
--
V
P
--
H
--
S
-
E
D
-----------
G
T
I
S
Q
R
F
L
-----------
G
-----------
Q
-----
T
-
G
I
V
V
GLVFDDPAT
Q
Y
P
D
----
D
P
L
------------
I
-
Q
V
--
L
V
E
--
G
L
G
-
E
D
L
F
F
---
P
-----------
E
E
L
E
L
A
---------
P
E
------------------------------------------------------------------------------------
24
Fugue
44.76
20%
-78
- C4 -
1Q1V
-
DEK_HUMAN
A:
[309-378]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEPLIKK
L
K
K
P
P
-----
T
--
D
E
E
L
-
K
E
T
-----------
I
K
K
L
--
L
--
A
S
--
A
--
N
-----------------
L
E
E
V
T
-----------
M
-----------
K
-----
Q
-
I
C
K
K
---------
V
Y
E
N
----
Y
P
T
------------
Y
D
L
T
--
E
R
K
--
D
F
I
-
K
T
T
V
K
---
E
-----------
L
-
I
S
L
E
---------
H
-------------------------------------------------------------------------------------
20
Fugue
43.72
14%
-100
- C1 -
1DIK
-
?
?:
[2-376]
AKWVYKFEEGNASMRNLLG
G
K
G
C
N
L
A
E
M
T
I
L
GMPIP
Q
G
F
T
VT
T
E
A
C
T
E
Y
Y
NSGKQIT
Q
E
I
Q
D
Q
I
F
E
A
I
T
W
L
E
E
L
NGKKFGDTE
D
P
L
L
V
S
V
R
S
A
A
R
A
S
M
P
GM
M
D
T
I
L
NLGLN
D
V
A
V
E
G
F
A
K
K
T
GN
P
R
F
A
Y
D
S
Y
R
R
F
I
Q
M
Y
S
D
VVMEVP
K
S
H
F
E
K
I
I
D
A
M
K
E
E
K
GVHFDTDLT
A
D
D
L
K
E
L
A
E
K
F
K
A
V
Y
K
EAMNGEEFPQE
P
K
D
Q
L
M
G
A
V
K
A
V
F
R
S
W
DN
P
R
A
I
-----
V
--
Y
R
R
M
-
N
D
I
-----------
P
G
D
W
--
G
--
T
A
--
V
--
N
-
V
Q
-----------
T
M
V
F
G
N
K
G
-----------
E
-----------
T
-----
S
-
G
T
G
V
---------
A
F
T
R
----
N
P
S
TGEK
G
I
------
Y
G
E
Y
--
L
I
N
--
A
Q
G
-
E
D
V
V
A
---
G
-----------
V
R
T
P
Q
P
---------
I
T
QLENDM
P
D
C
Y
K
Q
F
M
D
L
A
M
K
L
E
K
H
FRDMQD
M
E
F
T
I
EEG
K
L
Y
F
LQTRNGKRT
A
P
A
A
L
Q
I
A
C
D
L
V
D
E
GMIT
E
E
E
A
V
V
R
IEAKSLDQL
25
Fugue
43.49
13%
-93
- C6 -
1GCQ
-
C:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
-----
H
--
M
P
K
M
-
E
V
------------
F
Q
E
Y
--
Y
--
G
I
--
P
--
P
-
P
P
-----------
G
A
F
G
P
F
L
R
-----------
L
-----------
N
-----
P
-
G
D
I
V
---------
E
L
T
K
----
A
E
A
------------
E
H
N
W
--
W
E
G
--
R
N
T
-
A
T
N
E
V
G
W
F
P
-----------
C
N
R
V
H
P
---------
Y
V
------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AC
Q
A
S
Q
L
A
V
C
A
S
A
I
LSGAKP
S
G
E
C
C
GNLRAQQ
G
C
F
C
QYAKDPTY
G
Q
Y
IRSPHAR
D
T
L
T
SCGLAVPHC
41
92.74
100%
-126
- C- -
M041
-
A:
[1-80]
A
C
Q
A
S
Q
L
A
V
C
A
S
A
I
L
S
G
A
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
G
Q
Y
I
R
S
P
H
A
R
D
T
L
T
S
C
G
L
A
V
P
H
C
40
91.89
100%
-114
- C- -
M040
-
A:
[1-80]
A
C
Q
A
S
Q
L
A
V
C
A
S
A
I
L
S
G
A
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
G
Q
Y
I
R
S
P
H
A
R
D
T
L
T
S
C
G
L
A
V
P
H
C
42
91.19
100%
-116
- C- -
M042
-
A:
[1-128]
A
C
Q
A
S
Q
L
A
V
C
A
S
A
I
L
S
G
A
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
G
Q
Y
I
R
S
P
H
A
R
D
T
L
T
S
C
G
L
A
V
P
H
C
43
89.12
100%
-117
- C- -
M043
-
A:
[1-128]
A
C
Q
A
S
Q
L
A
V
C
A
S
A
I
L
S
G
A
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
G
Q
Y
I
R
S
P
H
A
R
D
T
L
T
S
C
G
L
A
V
P
H
C