@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 159_tV_WHEAT: (2014-05-02 )
APRGAHGAGECGKTPADKMALKLAPCASAGQDPKSVPSSGCCTAVHTIGKQSPKCLCAVMLSDTAKSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP
Atome Classification :
(20 SA)
--------------......------..---.-----10...----------------------.---------....20-.--.---.......-30-----------------...--------------------.---------------------.-----------------..--------------.40--------------------........---.50------.-------.-------.-------...-------...60.-----...----------.------.---.-.--------70--.......-------------.--.80.---..---.----..-..90-.........-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------APRGAH------GA---G-----ECGKT----------------------
P
---------
A
D
K
M
A
--
L
--
K
---LAPCASA-GQ-----------------DPK--------------------S---------------------V-----------------PS--------------SG---------------------
C
C
T
A
V
H
T
I
---GK-------Q-------S-------
P
-------
K
C
L
-------
C
A
V
M
LS-----DTA----------K------S---A-G--------I---K
P
E
V
A
MS-------------
I
--
P
K
RC---NL---V----DR-PVG--YKCGAYTLP-------------------------------------------------------------------------------------------------------------------------------------
30
SP3
69.60
21%
-80
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------
A
I
----------------------
S
---------
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
-
A
R
-----------------
G
Q
G
--------------------
S
---------------------
G
-----------------
P
S
--------------
A
G
---------------------
C
C
S
G
V
R
S
L
---
N
N
-------
A
ART
T
A
--
D
-------
R
-------
R
A
A
-------
C
N
C
L
K
N
-----
A
A
A
----------
G
------
V
---
S
-
G
--------
L
---
N
A
G
N
A
A
S
-------------
I
--
P
S
K
C
---
G
V
---
S
----
I
P
Y
T
I
S
TS
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
61.28
16%
-65
- C2 -
1QM4
1
METK1_RAT
A:
[129-251]
--------------
E
D
V
G
A
G
------
D
Q
---
G
L
M
F
G
Y
A
T
D
E
T
----------------------
E
ECMP
L
T
I
V
L
A
H
K
L
N
--
T
--
R
---
M
A
D
L
R
R
S
-
G
V
-----------------
L
P
W
--------------------
L
---------------------
R
-----------------
P
D
--------------
S
K
---------------------
T
Q
V
T
V
Q
Y
V
Q
D
N
G
A
-------
V
-------
I
-------
P
-------
V
R
V
-------
H
T
I
V
I
S
-----
V
Q
H
----------
N
------
E
---
D
-
I
--------
T
---
L
E
A
M
R
E
A
-------------
L
--
K
E
Q
V
IKA
V
V
---
P
----
A
K
-
Y
L
D
--
E
D
T
I
Y
H
L
Q
P
SGRF---------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
58.56
25%
-79
- C2 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
----------------------------------------------------------------
T
---------
C
G
Q
V
T
--
S
--
N
---
L
A
P
C
L
A
Y
-
L
R
-----------------
N
T
G
------------------------------------------------------------
P
L
--------------
G
R
---------------------
C
C
G
G
V
K
A
L
---
V
N
-------
S
-------
A
-------
R
T
T
E
D
R
Q
I
A
C
T
-------
C
--
L
K
S
-----
A
-
A
----------
G
------
A
---
I
S
G
--------
I
---
N
L
G
K
A
A
G
-------------
L
--
P
S
T
C
---
G
V
---
N
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
58.44
23%
-89
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
----------------------------------------------------------------
D
---------
C
G
H
V
D
--
S
--
L
---
V
R
P
C
L
S
Y
-
V
Q
-----------------
G
G
---------------------
P
---------------------
G
-----------------
P
S
--------------
G
Q
---------------------
C
C
D
G
V
K
N
L
---
H
N
Q
AR----
S
Q
S
D
R
---
Q
-------
S
-------
A
C
N
-------
C
L
K
G
I
A
------------------
R
------
G
---
I
H
N
--------
L
---
N
E
D
N
A
R
S
-------------
I
--
P
P
K
C
---
G
V
---
N
----
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
57.93
27%
-127
- C2 -
1HSS
-
IAA1_WHEAT
A:
[37-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
--------------
R
D
---------------------
C
C
Q
Q
L
A
H
I
--------------------
S
-------
E
-------
W
C
R
-------
C
G
A
L
Y
S
-----
M
L
D
----------
S
M
Y
K
---
E
---
H
-
G
AFPRCR
R
E
V
---
V
K
L
T
A
A
S
-------------
I
--
T
A
V
C
---
R
L
---
P
----
I
V
----------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
57.57
17%
-76
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------
P
Y
G
R
G
R
------
T
E
---
S
-----
G
C
Y
Q
Q
----------------------
M
---------
E
E
A
E
M
--
L
--
N
-----
H
C
G
M
Y
-
L
M
-----------------
K
N
L
--------------------
G
---------------------
E
-----------------
R
S
--------------
Q
V
SPR
M
R
E
E
D
H
K
Q
L
---------
C
C
M
Q
L
K
N
L
--------------------
D
-------
E
-------
K
C
M
-------
C
P
A
I
M
M
M
L
N
EP
M
W
I
----------
R
------
M
---
R
-
D
--------
Q
---
V
M
S
M
A
H
N
-------------
L
--
P
I
E
C
---
N
L
---
M
----
S
Q
-------
P
C
Q
M
-----------------------------------------------------------------------------------------------------------------------------------------
34
SP3
57.36
17%
-52
- C2 -
1B3T
-
EBNA1_EBVB9
A:
[1-147]
----------------
K
G
G
W
------
F
G
KHR
G
-----
Q
G
G
S
N
----------------------
P
K
--------
F
E
N
I
A
--
E
--
G
---
L
R
A
L
L
A
R
-
S
H
-----------------
V
E
R
--------------------
T
---------------------
T
-----------------
D
E
--------------
G
T
---------------------
W
V
A
G
V
--------------------------------------------------
F
V
Y
G
G
-----
S
K
T
----------
S
------
L
---
Y
-
N
--------
L
---
R
R
G
T
A
L
A
-------------
I
--
P
Q
-
C
---
R
L
T
P
L
S
----
R
L
-
P
F
G
--
M
A
P
G
P
G
P
Q
P
GPLRESI
V
C
Y
F
M
V
F
L
QT
H
I
F
A
E
V
L
K
D
A
I
K
D
L
V
M
TKPAPTCN
I
R
V
T
V
C
S
F
DDGVDLP-----------------------------------------------------------------------------
39
SP3
56.30
17%
-65
- C3 -
1I0Z
2
LDHB_HUMAN
A:
[1-332]
AT
L
K
E
K
L
I
APVAEE
E
A
T
V
P
N
N
K
I
T
V
V
G
V
---
G
-----
Q
V
G
M
A
C
A
I
S
I
L
G
K
SLAD
E
L
A
L
V
D
VL
E
D
K
---------
L
K
G
E
M
--
M
--
D
---
L
Q
H
G
S
L
F
-
L
Q
-----------------
T
P
K
I
V
A
D
KDYSVTANSK
I
V
V
V
T
A
G
---------------------
V
-----------------
R
Q
QEGESRLNL
V
Q
R
N
V
N
V
---------------------
F
K
F
I
I
P
Q
I
---
V
K
-------
Y
-------
S
-------
P
-------
D
C
I
I
I
V
V
S
NP
V
D
I
L
T
Y
-----
V
T
W
----------
K
------
L
---
S
-
G
--------
L
---
P
K
H
R
V
I
G
SGC
N
L
D
S
A
R
F
R
Y
L
M
--
A
E
K
L
---
G
I
---
H
PSS
C
H
G
-
W
I
L
--
G
E
H
G
D
S
S
V
A
VWSGVNVAGVS
L
Q
E
L
N
P
EMGTDNDSENW
K
E
V
H
K
M
V
V
E
S
A
Y
E
V
I
K
L
KGYTN
W
A
I
G
L
S
V
A
D
L
I
E
S
M
L
K
NLSRIHP
V
S
T
MVKGMYGIENE
V
F
L
S
L
P
C
I
L
N
ARGLT
S
V
I
N
Q
KLK
D
D
E
V
A
Q
L
K
K
S
A
D
T
L
W
D
I
Q
K
D
LKD
12
HHSearch
56.25
29%
-55
- C2 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
----------------------------------------------------------------
S
---------
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
-
A
R
-----------------
G
Q
G
--------------------
S
---------------------
G
-----------------
P
S
--------------
A
G
---------------------
C
C
S
G
V
R
S
L
---
N
N
-------
A
-------
A
RT
T
A
D
R
R
A
-------
A
C
N
-------
C
--
L
K
N
-----
A
A
-----------
A
------
G
---
V
S
G
--------
L
---
N
A
G
N
A
A
S
-------------
I
--
P
S
K
C
---
G
V
---
S
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
55.60
17%
-81
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------
G
P
M
R
R
------
E
R
---
G
-----
R
Q
G
D
S
----------------------
S
---------
S
C
E
R
Q
--
V
--
D
R
VN
L
K
P
C
E
Q
H
-
I
M
Q
R
I
MGEQEQYDSYDIRS
T
R
S
--------------------
S
---------------------
D
-----------------
Q
Q
--------------
Q
R
---------------------
C
C
D
E
L
N
E
M
----
E
-------
N
-------
T
-------
Q
-------
G
C
M
-------
C
E
A
L
Q
Q
-----
I
M
E
N
Q
CDRLQDR-
Q
------
M
---
V
-
Q
--------
Q
---
F
K
R
E
L
M
S
-------------
L
--
P
Q
Q
C
---
N
F
---
R
----
A
P
-
Q
-----
R
C
D
L
D
V
S
G
GRCS---------------------------------------------------------------------------------------------------------------------------------
1
Fugue
54.68
31%
-56
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------
A
I
D
----------------------
L
---------
C
G
M
S
Q
--
D
--
E
---
L
N
E
C
K
P
A
V
S
K
-----------------
E
N
P
--------------------
T
---------------------
S
-----------------
P
S
--------------
Q
P
---------------------
C
C
T
A
L
Q
H
A
--------------------
D
-------
F
-------
A
C
L
-------
C
G
Y
K
N
S
-----
P
W
L
----------
G
------
S
---
F
-
G
--------
V
---
D
P
E
L
A
S
A
-------------
L
--
P
K
Q
C
---
G
L
---
A
----
N
A
-
P
-----
T
C
-------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
53.34
28%
-82
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
----------------------------------------------------------------
T
---------
C
G
Q
V
Q
--
G
--
N
---
L
A
Q
C
I
G
F
-
L
Q
-----------------
K
G
---------------------
G
---------------------
V
-----------------
V
P
--------------
P
S
---------------------
C
C
T
G
V
K
N
I
---
L
N
-------
S
SRTTADR
R
-------
A
-------
V
C
S
-------
C
--
L
K
A
------
A
A
----------
G
------
A
---
V
R
G
--------
I
---
N
P
N
N
A
E
A
-------------
L
--
P
G
K
C
---
G
V
---
N
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
53.22
32%
-60
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
----------------------------------------
I
D
----------------------
L
---------
C
G
M
S
Q
--
D
--
E
---
L
N
E
C
K
P
A
-
V
S
-----------------
K
E
N
P-------------------
T
---------------------
S
-----------------
P
S
--------------
Q
P
---------------------
C
C
T
A
L
Q
H
A
--------------------
D
-------
F
-------
A
C
L
-------
C
G
Y
K
N
S
-----
P
W
L
----------
G
------
S
---
F
-
G
--------
V
---
D
P
E
L
A
S
A
-------------
L
--
P
K
Q
C
---
G
L
---
A
----
N
A
-
P
--------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
52.18
28%
-101
- C2 -
1N89
1
NLT2G_WHEAT
A:
[5-64]
---------------------------------------------------------------------------------
S
--
Q
---
L
A
V
C
A
S
A
-
I
L
-----------------
S
G
---------------------
A
---------------------
K
-----------------
P
S
--------------
G
E
---------------------
C
C
G
N
L
R
A
Q
--------------------
Q
---------------
G
C
F
-------
C
Q
Y
A
K
D
-----
P
T
Y
----------
G
------
Q
-----
Y
--------
I
---
R
S
P
H
A
R
D
-------------
T
--
L
T
S
C
---
G
L
---
A
----
V
-----------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.04
15%
-77
- C2 -
1W2Q
-
CONG_ARAHY
A:
[7-112]
--------------------------
R
G
---
R
-----
Q
G
D
S
S
----------------------
S
---------
C
E
R
Q
V
D
R
V
--
N
---
L
K
P
C
E
Q
H
-
I
M
-----------------
Q
R
I
--------------------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
--------------
Q
R
---------------------
C
C
D
E
L
N
E
M
---
E
--------
N
-------
T
-------
Q
-------
G
C
M
-------
C
E
A
L
Q
Q
-----
I
M
E
----------
N
Q
CD---
R
L--
Q
-
D
RQ------
M
V
Q
Q
F
K
R
E
L
M
S
-------------
L
--
P
Q
Q
C
---
N
F
---
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
51.24
17%
-82
* C2 *
1BEA
-
ITRF_MAIZE
A:
[16-109]
------------------------------------------------------------------------------------
P
---
L
P
S
C
R
W
Y
-
V
T
-----------------
S
R
T
CGIG----------------
P
R--------------------
L
P
W
P
E
-------------
L
K
--------------
R
R
---------------------
C
C
R
E
L
A
D
I
--------------------
P
-------
A
-------
Y
C
R
-------
C
T
A
L
S
I
-----
L
M
D
G
A
I
-------
P
P
G
PDAQ
L
E
G
R
L
-
E
D
LPGCP
R
E
V
---
Q
R
G
F
A
A
T
-------------
L
VT
E
A
E
C
---
N
L
---
A
----
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
51.08
18%
-53
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------A
E
F
M
E
S
K
G
E
R
E
G
S
------
S
S
---
Q
-----
Q
C
R
Q
E
----------------------
V
---------
Q
R
K
-------
D
---
L
S
S
C
E
R
Y
-
L
R
-----------------
Q
S
S
--------------------
S
---------------------
R
-----------------
R
S
--------------
T
G
EEVLRMPGDENQQQESQQL
Q
Q
C
C
N
Q
V
K
Q
V
--------------------
R
-------
D
-------
E
C
Q
-------
C
E
-
A
I
K
-----
Y
I
A
----------
E
------
D
---
Q
-
I
--------
Q
---
Q
G
Q
L
H
G
E
-------------
E
--
S
E
R
V
---
A
Q
---
R
----
A
G
-
E
I
V
--
S
S
C
G
V
R
C
M
R
QTRTN--------------------------------------------------------------------------------------------------------------------------------
32
SP3
50.48
15%
-118
- C2 -
1HYP
-
?
?:
[6-80]
-------------------------------
P
-----
S
C
P
D
-----------------------------------------------
L
S
I
C
L
N
I
-
L
G
-----------------
G
-
S
--------------------
L
---------------------
G
-----------------
T
V
--------------
D
D
---------------------
C
C
A
L
I
G
G
L
---
G
D
I
------
E
-------
A
-------
I
-------
V
C
L
-------
C
I
Q
L
R
A
-----------------------------
L
-
G
--------
I
L--
N
L
N
R
N
L
Q
L
------------
I
--
L
N
S
C
---
G
----
R
----
S
Y
-
P
S
N
--
A
T
C
P
R
T
----------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
49.13
16%
-65
- C2 -
1PSY
-
2SS_RICCO
A:
[15-116]
----------------------------------------
S
Q
----------------------
Q
---------
C
R
Q
E
V
--
Q
RK
D
---
L
S
S
C
E
R
Y
-
L
R
-----------------
Q
S
S
--------------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----------------
Q
L
--------------
Q
Q
---------------------
C
C
N
Q
V
K
Q
V
--------------------
R
-------
D
-------
E
C
Q
-------
C
E
A
I
K
Y
-----
I
A
E
D
Q
I
Q
Q
G
QLHG
E
------
E
---
S
-
E
--------
R
---
V
A
Q
R
A
G
E
-------------
I
--
V
S
S
C
---
G
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
49.13
20%
-75
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
----------------------------------------------------------------
T
---------
C
G
Q
V
S
--
S
--
S
---
L
A
P
C
I
P
Y
-
V
R
-----------------
G
G
---------------------
G
---------------------
A
-----------------
V
P
--------------
P
A
---------------------
C
C
N
G
I
R
N
V
---
N
N
L
A
RT
T
P
D
R
-------
Q
-------
A
-------
A
C
N
-------
C
--
L
K
Q
-----
L
-
S
----------
A
------
S
---
V
P
G
--------
V
---
N
P
N
N
A
A
A
-------------
L
--
P
G
K
C
---
G
V
---
S
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
APRGAHGAGECGKT
P
A
D
K
M
A
L
K
LAPCASAGQDPKSVPSSG
C
C
T
A
V
H
T
I
GKQS
P
K
C
L
C
A
V
M
LSDTAKSAGIK
P
E
V
A
MS
I
P
K
RCNLVDRPVGYKCGAYTLP
44
80.11
100%
-95
- C- -
M044
-
A:
[1-172]
A
P
R
G
A
H
G
A
G
E
C
G
K
T
P
A
D
K
M
A
L
K
L
A
P
C
A
S
A
G
Q
D
P
K
S
V
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
D
T
A
K
S
A
G
I
K
P
E
V
A
M
S
I
P
K
R
C
N
L
V
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P
45
78.56
100%
-110
- C- -
M045
-
A:
[1-172]
A
P
R
G
A
H
G
A
G
E
C
G
K
T
P
A
D
K
M
A
L
K
L
A
P
C
A
S
A
G
Q
D
P
K
S
V
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
D
T
A
K
S
A
G
I
K
P
E
V
A
M
S
I
P
K
R
C
N
L
V
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P
40
75.97
100%
-84
- C- -
M040
-
A:
[1-138]
A
P
R
G
A
H
G
A
G
E
C
G
K
T
P
A
D
K
M
A
L
K
L
A
P
C
A
S
A
G
Q
D
P
K
S
V
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
D
T
A
K
S
A
G
I
K
P
E
V
A
M
S
I
P
K
R
C
N
L
V
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P