@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 170_tV_ARATH: (2014-05-02 )
AGECGRMPINQAAASLSPCLPATKNPRGKVPPVCCAKVGALIRTNPRCLCAVMLSPLAKKAGINPGIAIGVPKRCNIRNRPAGKRCGRYIVP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.........10..--.---.....20....----..------.---------------.-----------------30-.-------.......40-..-------.-------.-------.-------...50.-------...---..---.------.------60----------.--------.-----.---.-.-....70.-----------.-......-.80...--......90.------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------AGECGRM
P
I
N
Q
A
A
--A---SLSPCLPATKN----PR------G---------------K-----------------VP-
P
-------
V
C
C
A
K
V
G
A
L
-IR-------T-------N-------
P
-------
R
C
L
C
A
V
-------
M
L
S
---
P
L
---
A
------
K
------K-----------A--------G-----I---N-P-GIAIG-V-----------P-KRCNIR-NR-PAG--KRCGRYIVP------------------------------------------------------------------------------------------------------------
14
HHSearch
75.98
30%
-127
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
-----------------------------------------------------------------------------------
I
T
C
G
Q
V
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--
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---
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-------
G
---------------
A
-----------------
V
P
-
P
-------
A
C
C
N
G
I
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-
N
N
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A
RT
T
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D
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-------
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-------
A
-------
A
C
N
C
---------
L
K
Q
----
L
---
S
------
A
------
S
-----------
V
P-------
G
-----
V
---
N
-
P
-
N
N
A
A
A
-
L
-----------
P
-
G
K
C
G
V
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------
16
HHSearch
73.03
33%
-109
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
-----------------------------------------------------------------------------------
I
T
C
G
Q
V
T
--
S
---
N
L
A
P
C
L
A
Y
L
R
N
----
T
G
----------------------------------------
P
L
-
G
-------
R
C
C
G
G
V
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A
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-
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-------
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-------
A
-------
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A
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T
C
---------
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K
S
----
A
---
A
------
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------
A
-----------
I
S-------
G
-----
I
---
N
-
L
-
G
K
A
A
G
-
L
-----------
P
-
S
T
C
G
V
N
-
I
P
---------------------------------------------------------------------------------------------------------------------------
15
HHSearch
70.53
28%
-98
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-82]
------------------------------------------------------------------------------------
T
C
G
Q
V
Q
--
G
---
N
L
A
Q
C
I
G
F
L
Q
K
----
G
-------
G
---------------
V
-----------------
V
P
-
P
-------
S
C
C
T
G
V
K
N
I
-
L
N
-------
S
SRTTADR
R
-------
A
-------
V
C
S
C
L
---------
K
A
----
A
---
A
------
G
------
A
-----------
V
R-------
G
-----
I
---
N
-
P
-
N
N
A
E
A
-
L
-----------
P
-
G
K
C
G
V
N
-
I
P
Y
K
I
S
-----------------------------------------------------------------------------------------------------------------------
36
SP3
66.19
25%
-98
* C4 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
P
--------------
D
L
S
I
C
L
N
I
L
G
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----
S
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------
G
---------------
T
-----------------
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--
D
-------
D
C
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A
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G
L
-
G
D
I
------
E
-------
A
-------
I
-------
V
C
L
C
---------------
I
Q
---
L
------
R
------
A
-----------
L
--------
G
-----
I
L--
N
-
L
-
N
R
N
L
Q
L
I
-----------
L
-
N
S
C
G
-
R
-
S
Y
-
P
S
N
--
A
T
C
P
R
T
---------------------------------------------------------------------------------------------------------------
30
HHSearch
63.79
19%
-140
- C4 -
1SM7
-
?
A:
[14-100]
------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
I
R
Q
----
Q
L
------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
-
E
-------
Q
C
C
N
E
L
Y
Q
E
------------------
D
-------
Q
-------
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V
C
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-------
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Q
---
A
A
---
K
S
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RV--
Q
G-----
Q
-----------
H
--------
G
PFQST
R
---
I
-
Y
-
Q
I
A
K
N
-
L
-----------
P
-
N
V
C
N
M
K
-
Q
----------------------------------------------------------------------------------------------------------------------------
31
SP3
62.49
20%
-90
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
---
A
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A
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----
Q
G
------
S
---------------
G
-----------------
P
S
-
A
-------
G
C
C
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V
R
S
L
-
N
N
-------
A
ART
T
A
--
D
-------
R
-------
R
A
A
C
N
C
-------
L
K
N
---
A
A
---
A
------
G
------
V
-----------
S
--------
G
-----
L
---
N
-
A
-
G
N
A
A
S
-
I
-----------
P
-
S
K
C
G
V
S
I
P
Y
-
T
I
S
TS
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------
13
HHSearch
61.59
18%
-97
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-82]
------------------------------------------------------------------------------------
D
C
G
H
V
D
--
S
---
L
V
R
P
C
L
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Y
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----
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-------
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---------------
G
-----------------
P
S
-
G
-------
Q
C
C
D
G
V
K
N
L
-
H
N
Q
AR----
S
Q
S
D
R
---
Q
-------
S
-------
A
C
N
C
L
K
-------
G
I
A
---------------
R
------
G
-----------
I
H-------
N
-----
L
---
N
-
E
-
D
N
A
R
S
-
I
-----------
P
-
P
K
C
G
V
N
-
L
P
Y
T
I
S
-----------------------------------------------------------------------------------------------------------------------
1
Fugue
61.03
30%
-64
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
G
-----
M
S
Q
--
D
---
E
L
N
E
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A
V
S
K
----
E
N
------
P
---------------
T
-----------------
S
P
S
Q
-------
P
C
C
T
A
L
Q
----
H
-------
A
-------
D
-------
F
-------
A
C
L
C
G
Y
-------
K
N
S
---
P
W
---
L
------
G
------
S
-----------
F
--------
G
-----
V
---
D
-
P
-
E
L
A
S
A
-
L
-----------
P
-
K
Q
C
G
L
A
-
N
A
-
P
-----
T
C
------------------------------------------------------------------------------------------------------------------
12
HHSearch
61.02
24%
-95
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
------------------------------------------------------------------------------------
S
C
G
Q
V
A
--
S
---
A
I
A
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C
I
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Y
A
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----
Q
G
------
S
---------------
G
-----------------
P
S
-
A
-------
G
C
C
S
G
V
R
S
L
-
N
N
-------
A
-------
A
RT
T
A
D
R
R
A
-------
A
C
N
C
---------
L
K
N
----
A
---
A
------
A
------
G
-----------
V
S-------
G
-----
L
---
N
-
A
-
G
N
A
A
S
-
I
-----------
P
-
S
K
C
G
V
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------
20
HHSearch
56.23
21%
-87
- C4 -
1S6D
-
2SS8_HELAN
A:
[10-97]
------------------------------------------------------------------------------------
G
C
Y
Q
Q
M
--
E
E
A
E
M
L
N
H
C
G
M
Y
L
M
K
----
N
L
------
G
ERSQVSPR
M
R
E
E
---
D
-----------------
H
K
-
Q
-------
L
C
C
M
Q
L
K
N
L
------------------
D
-------
E
-------
K
C
M
C
P
A
-------
I
M
M
---
M
L
---
N
------
E
PMWIR-
M
-----------
R
--------
D
-----
Q
---
V
-
M
-
S
M
A
H
N
-
L
-----------
P
-
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
55.72
16%
-105
- C4 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
------------------------------------------------------------------------------------
S
C
E
R
Q
V
D
R
V
---
N
L
K
P
C
E
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H
I
M
Q
----
R
I
------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
-
Q
-------
R
C
C
D
E
L
N
E
M
-
E
--------
N
-------
T
-------
Q
-------
G
C
M
C
E
A
-------
L
Q
Q
---
I
M
E
N
Q
C
------
D
------
R
-----------
L
Q-------
D
RQ---
M
V
Q
Q
F
-
K
-
R
E
L
M
S
-
L
-----------
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-
Q
Q
C
N
F
R
------------------------------------------------------------------------------------------------------------------------------
9
Fugue
54.91
15%
-58
- C5 -
2P5T
-
PEZA_STRPN
A:
[67-158]
----------------------------------------------------------------------LNPVEDY
E
L
T
L
K
I
E
I
V
K
E
R
G
--
A
---
N
L
L
S
R
L
Y
R
Y
Q
D
----
S
Q
------
G
---------------
I
-----------------
S
I
-
D
DESNPWI
L
M
S
D
D
L
S
D
L
-
I
H
-------
T
-------
N
--------------------
I
-------
Y
L
V
---
E
T
---
F
------
D
------
E
-----------
I
--------
E
-----
R
---
Y
-
S
-
G
Y
L
D
G
-
I
-----------
E
-
R
M
L
E
I
S
-
E
K
-
R
M
V
--
A
--------------------------------------------------------------------------------------------------------------------
26
HHSearch
53.99
20%
-102
- C4 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
------------------------------------------------------------------------------------------------
A
L
P
A
C
R
P
L
L
R
L
----
Q
C
N
GSQ--
V
P
E
-------------
A
-----------------
V
L
-
R
-------
D
C
C
Q
Q
L
A
H
I
------------------
S
-------
E
-------
W
C
R
C
G
A
-------
L
Y
S
---
M
L
---
D
S
M
Y
---
K
------
E
-----------
H
GAFPRCR
R
E
-----
V
---
V
-
K
-
L
T
A
A
S
-
I
-----------
T
-
A
V
C
R
L
P
-
I
V
-
V
D
------------------------------------------------------------------------------------------------------------------------
10
HHSearch
53.17
26%
-80
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
----------------------------------------------------------------------------------
I
D
L
C
G
M
S
Q
--
D
---
E
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A
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----
E
N
P-----
T
---------------
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-----------------
P
S
-
Q
-------
P
C
C
T
A
L
Q
H
A
------------------
D
-------
F
-------
A
C
L
C
G
Y
-------
K
N
S
---
P
W
---
L
------
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------
S
-----------
F
--------
G
-----
V
---
D
-
P
-
E
L
A
S
A
-
L
-----------
P
-
K
Q
C
G
L
A
-
N
A
-
P
-------------------------------------------------------------------------------------------------------------------------
19
HHSearch
52.93
25%
-89
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
L
G
G
-----
S
------
L
---------------
G
-----------------
T
V
-
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-------
D
C
C
A
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I
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L
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D
-------
I
E
------
A
-------
I
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V
C
L
C
I
Q
-------
L
R
A
---------------
L
------
G
-----------
I
--------------
L
---
N
-
L
-
N
R
N
L
Q
-
L
-----------
I
L
N
S
C
G
R
S
--
Y
-
P
S
N
--
A
T
C
P
R
----------------------------------------------------------------------------------------------------------------
21
HHSearch
50.84
26%
-143
- C4 -
2DS2
-
?
B:
[7-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
R
-------
Q
C
C
N
Q
L
R
Q
V
------------------
D
-------
R
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C
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V
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R
Q
---
A
A
---
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Q
V
L
Q
R
Q
I
------
I
-----------
Q
--------
G
P
Q
Q
L
R
R
---
L
-
F
-
D
A
A
R
N
-
L
-----------
P
-
N
I
C
N
I
P
-
N
I
---------------------------------------------------------------------------------------------------------------------------
37
SP3
48.11
13%
-100
* C5 *
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
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S
G
A
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I
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A
D
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T
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--
A
---
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A
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----
A
V
I
I
M
V--
N
---------------
N
-----------------
P
L
-
D
-------
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M
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Y
L
A
A
E
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K
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-------
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A
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D
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A
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Y
R
T
---
F
I
---
A
------
M
------
E
-----------
A
--------
G
-----
V
---
S
-
V
E
D
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Q
A
M
-
L
M
G
G
H
GDE
M
V
P
L
P
-
R
F
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T
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S
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G
I
-
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V
-------
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L
A
Q
I
V
E
R
T
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K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
28
HHSearch
47.09
15%
-101
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-110]
------------------------------------------------------------------------------------------------
P
L
D
S
C
R
W
Y
V
S
T
----
R
T
CGVGPR
L
A
T
Q
------------
E
-----------------
M
K
-
A
-------
R
C
C
R
Q
L
E
A
I
------------------
P
-------
A
-------
Y
C
R
C
E
A
-------
V
R
I
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M
D
G
V
---
V
------
T
------
P
SG
Q
H
E
G
RLLQD
L
P-------
G
CP
R
Q
-
V
Q
--
R
A
F
-
A
P
K
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-
T
-----------
E
-
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E
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N
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A
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T
I
-
H
G
------------------------------------------------------------------------------------------------------------------------
29
HHSearch
45.81
21%
-87
- C4 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------
Q
---
M
L
S
H
C
R
M
Y
M
R
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Q
M
E
E
S
T
------
Y
QTMPRRGME------
P
-----------------
H
M
-
S
-------
E
C
C
E
Q
L
E
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M
------------------
D
-------
E
-------
S
C
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-------
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R
M
---
M
M
---
R
------
M
M
Q
Q
K
EM
Q
-----------
P
R
-------
G
E
Q
M
R
-
R
---
M
-
M
-
R
L
A
E
N
-
I
-----------
P
-
S
R
C
N
L
S
------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
44.84
16%
-93
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
V
T
S
----
R
T
CGIG--
P
---------------
R
LP
W
P
E
------------
L
K
-
R
-------
R
C
C
R
E
L
A
D
I
------------------
P
-------
A
-------
Y
C
R
C
T
A
-------
L
S
I
L
M
D
G
A
---
I
------
P
------
P
G
PDAQL
E
G
R
--
L
E
D
LPGCP
R
E
-----
V
---
Q
-
R
-
G
F
A
A
T
-
L
VT---------
E
-
A
E
C
N
L
A
-
T
I
---------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRM
P
I
N
Q
A
A
ASLSPCLPATKNPRGKVP
P
V
C
C
A
K
V
G
A
L
IRTN
P
R
C
L
C
A
V
M
L
S
P
L
A
K
KAGINPGIAIGVPKRCNIRNRPAGKRCGRYIVP
46
38.49
100%
2
- C- -
M046
-
A:
[7-131]
A
G
E
C
G
R
M
P
I
N
Q
A
A
A
S
L
S
P
C
L
P
A
T
K
N
P
R
G
K
V
P
P
V
C
C
A
K
V
G
A
L
I
R
T
N
P
R
C
L
C
A
V
M
L
S
P
L
A
K
K
A
G
I
N
P
G
I
A
I
G
V
P
K
R
C
N
I
R
N
R
P
A
G
K
R
C
G
R
Y
I
V
P
45
35.77
100%
-9
- C- -
M045
-
A:
[6-114]
A
G
E
C
G
R
M
P
I
N
Q
A
A
A
S
L
S
P
C
L
P
A
T
K
N
P
R
G
K
V
P
P
V
C
C
A
K
V
G
A
L
I
R
T
N
P
R
C
L
C
A
V
M
L
S
P
L
A
K
K
A
G
I
N
P
G
I
A
I
G
V
P
K
R
C
N
I
R
N
R
P
A
G
K
R
C
G
R
Y
I
V
P
44
34.18
100%
-8
- C- -
M044
-
A:
[6-114]
A
G
E
C
G
R
M
P
I
N
Q
A
A
A
S
L
S
P
C
L
P
A
T
K
N
P
R
G
K
V
P
P
V
C
C
A
K
V
G
A
L
I
R
T
N
P
R
C
L
C
A
V
M
L
S
P
L
A
K
K
A
G
I
N
P
G
I
A
I
G
V
P
K
R
C
N
I
R
N
R
P
A
G
K
R
C
G
R
Y
I
V
P