@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-07 )
AIGCGTVVSYLNSCFPYVTGTGALGGCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTTGVDLGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........---10-........-------------------.--------------20-------..-----------------------.--------------.------------.---..---..30........-----------40........50.......-----.-------60--------.---------.-----------.......--70........80--...------------------......90--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIGCGTVVS---Y--LNSCFPYV-------------------T--------------G--------TG-----------------------A--------------L------------G---GC---CKGIKDLYAAAQ-----------TTADRQSVCDCLKDLAAST-----T-------G---------V---------D-----------LGKAAGL--PSQCGLNIPYK---IIP------------------STDCSKVQ--------
21
HHSearch
95.34
62%
-155
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
---
N
--
L
A
P
C
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A
Y
L
-------------------
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--------------
N
--------
T
G
-----------------------
P
--------------
L
------------
G
---
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
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Q
I
A
C
T
C
L
K
S
A
A
G
A
I
-----
S
-------
G
---------
I
---------
N
-----------
L
G
K
A
A
G
L
--
P
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T
C
G
V
N
I
P
Y
K
---
I
S
P
------------------
S
T
D
C
S
K
V
Q
--------
23
HHSearch
91.49
52%
-154
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
---
S
--
L
A
P
C
I
P
Y
V
-------------------
R
--------------
G
--------
G
G
-----------------------
A
--------------
V
P-----------
P
---
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
S
A
S
V
-----
P
-------
G
---------
V
---------
N
-----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
---
I
S
A
------------------
S
T
N
C
A
T
V
K
--------
11
SP3
86.28
50%
-139
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
---
A
--
I
A
P
C
I
S
Y
A
-------------------
R
--------------
G
--------
Q
G
SG---------------------
P
--------------
S
------------
A
---
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
-----
S
-------
G
---------
L
---------
N
-----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
------------------
S
T
D
C
S
R
V
N
--------
26
HHSearch
85.56
42%
-153
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
---
L
--
V
R
P
C
L
S
Y
V
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--------------
G
--------
G
P
-----------------------
G
--------------
P
S-----------
G
---
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
A
R
G
I
-----
H
-------
N
---------
L
---------
N
-----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
---
I
S
L
------------------
N
I
D
C
S
R
V
---------
25
HHSearch
84.36
40%
-146
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
---
N
--
L
A
Q
C
I
G
F
L
-------------------
Q
--------------
K
--------
G
G
-----------------------
V
--------------
V
P-----------
P
---
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
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C
S
C
L
K
A
A
A
G
A
V
-----
R
-------
G
---------
I
---------
N
-----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
---
I
S
T
------------------
S
T
N
C
N
S
I
N
--------
22
HHSearch
83.48
51%
-141
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
---
A
--
I
A
P
C
I
S
Y
A
-------------------
R
--------------
G
--------
Q
G
-----------------------
S
GP------------
S
------------
A
---
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
-----
S
-------
G
---------
L
---------
N
-----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
------------------
S
T
D
C
S
R
V
N
--------
33
HHSearch
63.25
32%
-156
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
--
L
P
S
C
R
W
Y
V
-------------------
T
S
R
TC----------
G
--------
I
G
-----------------------
P
--------------
R
LP
W
P
E
L
K
-----
R
---
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
M
D
G
A
-----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
-
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
------------------------------------------
4
Fugue
56.61
25%
-121
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
--
L
N
H
C
G
M
Y
L
-------------------
M
KNLGERSQVSPR
M
R
E
--------
E
D
-----------------------
H
--------------
K
------------
Q
---
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
M
M
L
N
E
P
-----
M
-------
W
---------
I
---------
R
MR
D
Q
V
------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
----------------------------
S
Q
P
C
Q
M
----------
27
HHSearch
56.22
30%
-102
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
---
E
--
L
N
E
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K
P
A
V
-------------------
S
--------------
K
--------
E
N
PTS--------------------
P
--------------
S
------------
Q
---
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-----
F
-------
G
---------
V
---------
D
-----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-----------------------------------------
34
HHSearch
54.92
26%
-127
- C2 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
H
--
L
R
A
C
Q
Q
W
I
-------------------
R
--------------
Q
QLA-----
G
S
-----------------------
P
F
S
E
NQWGPQQGPS
L
R
------------
E
---
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
A
K
S
V
-----
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
-----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
------------------------------------------
38
HHSearch
54.05
25%
-138
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
M
--
L
N
H
C
G
M
Y
L
-------------------
M
--------------
K
NLGE----
R
S
-----------------------
Q
VSPR
M
R
E
E
D
H----
K
------------
Q
---
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
M
M
L
N
E
P
-----
M
W------
I
RMR
D
-----
Q
---------
V
-----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
--------------------------------------------
2
Fugue
53.23
31%
-92
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
---
E
--
L
N
E
C
K
P
A
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-------------------
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--------------
K
--------
E
N
-----------------------
P
--------------
T
------------
S
PS
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
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F
A
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N
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-----
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-------
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---------
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---------
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-----------
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E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
---------------------------
P
T
C
------------
35
HHSearch
52.54
26%
-122
- C2 -
3OB4
-
?
A:
[430-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
Q
Q
I
M
E
N
Q
S
DRL-
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
------
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
------------------------------------------
32
HHSearch
51.14
22%
-137
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
--
L
D
S
C
R
W
Y
V
-------------------
S
T
R
T
C----------
G
--------
V
G
-----------------------
P
--------------
R
LA
T
Q
E
M
K
-----
A
---
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
M
D
G
V
-----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
-----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
-----------------------------------------
36
HHSearch
50.02
24%
-80
- C2 -
1PSY
-
2SS_RICCO
A:
[25-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
---
D
--
L
S
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C
E
R
Y
L
-------------------
R
--------------
Q
S
S
S
R
----
R
S
T
GE--------------------
E
VLRM----------
P
GDENQQQESQQL
Q
---
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
A
E
D
Q
-----
I
Q
Q
G
QLH-
G
EE
S
E
-----
R
---------
V
-----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
------------------------------------------
6
Fugue
48.68
23%
-77
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
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C
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Q
E
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---
R
KD
L
S
S
C
E
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Y
L
-------------------
R
--------------
Q
--------
S
S
S
R
R
S
T
GEEVLRMPGDENQQQESQ
Q
--------------
L
------------
Q
---
Q
C
---
C
N
Q
V
K
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V
-------------------
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D
E
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C
E
A
I
K
Y
I
A
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D
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-----
I
-------
Q
---------
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---------
G
QLHGEE
S
E
R
V
-
A
Q
R
A
G
E
I
--
V
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C
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V
R
C
M
R
Q
-----
T
------------------
R
T
N
-------------
10
Fugue
47.24
20%
-112
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------MC
Y
P
G
Q
A
F
Q
V
P
---
A
--
L
P
A
C
R
P
L
L
-------------------
R
--------------
L
Q
C
N
GSQVP
E
A
-----------------------
V
--------------
L
------------
R
---
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
L
D
S
-
M
Y
K
E
-
H
--------------------------------------------
G
A
--
F
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R
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---
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TAVCR
L
P
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VDASGDG
A
Y
V
C
K
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A
A
YPDA---
9
Fugue
44.56
20%
-122
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
---
Q
--
L
T
V
C
T
G
A
I
-------------------
A
G-------------
G
--------
A
R
-----------------------
P
--------------
T
------------
A
---
A
C
---
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
V
N
S
---------------------------------------------------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
T
----------------------------
C
H
-----------
5
Fugue
42.71
20%
-79
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
D
R
V-
N
--
L
K
P
C
E
Q
H
I
M
Q
R
I
MGEQEQYDSYDIRST
R
--------------
S
--------
S
D
-----------------------
Q
--------------
Q
------------
Q
---
R
C
---
C
D
E
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E
M
-------------------
E
N
T
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G
C
M
C
E
A
L
Q
Q
I
M
E
-----
N
-------
Q
---------
C
---------
D
RLQDRQMV
Q
Q
F
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
R
CDL
D
V
S
------------------
G
G
R
C
S
-----------
15
SP3
41.00
15%
-108
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G-
S
--
V
V
D
A
L
R
A
V
-------------------
R
--------------
N
--------
A
A
-----------------------
P
--------------
D
------------
L
---
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
P
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
-----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
------------------
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AIGCGTVVSYLNSCFPYVTGTGALGGCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTTGVDLGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
39
99.81
100%
-155
- C- -
M039
-
A:
[1-94]
A
I
G
C
G
T
V
V
S
Y
L
N
S
C
F
P
Y
V
T
G
T
G
A
L
G
G
C
C
K
G
I
K
D
L
Y
A
A
A
Q
T
T
A
D
R
Q
S
V
C
D
C
L
K
D
L
A
A
S
T
T
G
V
D
L
G
K
A
A
G
L
P
S
Q
C
G
L
N
I
P
Y
K
I
I
P
S
T
D
C
S
K
V
Q
43
95.03
100%
-163
- C- -
M043
-
A:
[1-94]
A
I
G
C
G
T
V
V
S
Y
L
N
S
C
F
P
Y
V
T
G
T
G
A
L
G
G
C
C
K
G
I
K
D
L
Y
A
A
A
Q
T
T
A
D
R
Q
S
V
C
D
C
L
K
D
L
A
A
S
T
T
G
V
D
L
G
K
A
A
G
L
P
S
Q
C
G
L
N
I
P
Y
K
I
I
P
S
T
D
C
S
K
V
Q
46
94.36
100%
-163
- C- -
M046
-
A:
[1-92]
A
I
G
C
G
T
V
V
S
Y
L
N
S
C
F
P
Y
V
T
G
T
G
A
L
G
G
C
C
K
G
I
K
D
L
Y
A
A
A
Q
T
T
A
D
R
Q
S
V
C
D
C
L
K
D
L
A
A
S
T
T
G
V
D
L
G
K
A
A
G
L
P
S
Q
C
G
L
N
I
P
Y
K
I
I
P
S
T
D
C
S
K
V
Q