@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 594_tV_RICCO: (2014-05-11 )
AGECGRSTTPDMEAFKLAPCASAAQDTTSPVSSQCCAQVKKMGQNPPCLCAVMLSNTAKSSGVQPENAITIPKRCNIANRPVGYKCGAYTLP
Atome Classification :
(20 SA)
----------........--.10-------...--.---.----...---20......---.-----------------.---------------------30----------------..------------.......40..--.--------.--------..------..50....-----.---..----------.------60-----------.--------.-----.---.-...----------------..70.--......--------.-.80..--......90.-----------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------AGECGRST--TPD-------
M
E
A
--
F
---
K
----LAP---CASAAQDT---T-----------------S---------------------P-----------------
V
S
------------
S
Q
C
C
A
Q
V
K
KMG--Q--------N--------PP------
C
L
C
A
V
M
LS-----N---TA----------K------S------------S--------G-----V---Q-PEN----------------
A
I
T-I--PKRCNI--------A-NRPVG--YKCGAYTLP-----------------------------------------------------------------------------------------------------------------------------------------
32
SP3
71.48
22%
-76
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------
A
I
--
S
C
G
-------
Q
V
A
--
S
---
A
----
I
A
P
---
C
I
S
Y
A
R
G
Q
---
G
-----------------
S
---------------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
--
N
--------
A
--------
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
N
-----
A
---
A
A
----------
G
------
V
------------
S
--------
G
-----
L
---
N
-
A
G
N
----------------
A
A
S
-
I
--
P
S
K
C
G
V
--------
S
I
P
Y
T
I
S
TS
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
66.03
21%
-88
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------
M
C
Y
P
G
Q
--
A
F
Q
VPAL
P
A
C
R
P
L
--
L
---
R
----
L
Q
C
---
N
G
S
--
Q
V
P
---------------------
E
---------------------
A
-----------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
------------
S
--------
E
W
------
C
R
C
G
A
L
Y
S
-----
M
---
L
D
----------
S
----------------------------
M
-----
Y
---
K
-
E
H
-GAFPRCR
R
E
V
V
K
L
T
A
A
S
I
T
-
A
----
V
C
R
L
P
I
V
VDASG
D
-
G
A
Y
V
C
--
K
D
V
A
A
Y
P
D
A
-----------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
63.85
34%
-57
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------A
I
D
L
C
G
M
S
---------------
Q
--
D
---
E
----
L
N
E
---
C
K
P
A
V
S
K
E
N--
P
-----------------
T
---------------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
------------
D
--------
F
A
------
C
L
C
G
Y
K
N
S
-----
P
---
W
L
----------
G
------
S
------------
F
--------
G
-----
V
---
D
-
P
E
L
----------------
A
S
A
-
L
--
P
K
Q
C
G
L
--------
A
-
N
A
P
-----
T
C
-----------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
63.79
22%
-92
- C2 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
---------------------------------------
P
----
L
P
S
---
C
R
W
Y
V
T
S
R
---
T
CGIG-------------
P
---------------------
R
LP
W
P
E
------------
L
K
------------
R
R
C
C
R
E
L
A
D
I
------------
P
--------
A
Y
------
C
R
C
T
A
L
S
I
L
M
D
--
G
---
A
I
----------
P
P
G
PDAQ
L
E
G
R
---------
L
E
D
LPGCP
R
E
-----
V
---
Q
-
R
G
F
----------------
A
A
T
-
L
VT
E
A
E
C
N
L
--------
A
-
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
63.79
19%
-114
- C2 -
1SM7
-
?
A:
[5-100]
---------------------
C
Q
-------
R
E
F
--
Q
QE
Q
H
----
L
R
A
---
C
Q
Q
W
I
R
Q
Q
---
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP------
S
-----------------
L
R
------------
E
Q
C
C
N
E
L
Y
Q
E
------------
D
--------
Q
V
------
C
V
C
P
T
L
K
Q
-----
A
---
A
K
S
V
RV------
Q
------
G
Q-----------
H
--------
G
PFQST
R
---
I
-
Y
Q
I
----------------
A
K
N
-
L
--
P
N
V
C
N
M
--------
K
-
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
62.75
17%
-72
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
----GPMRRE
R
G
R
Q
G
D
S
S
SC
E
R
Q
-------
V
D
R
--
V
---
N
----
L
K
P
---
C
E
Q
H
I
M
Q
R
---
I
MGEQEQYDSYDIRSTR
S
S
---------------------
D
-----------------
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
--
N
--------
T
--------
Q
G
------
C
M
C
E
A
L
Q
Q
-----
I
---
M
E
N
Q
CDRLQDR-
Q
------
M
------------
V
--------
Q
-----
Q
---
F
-
K
R
E
----------------
L
M
S
-
L
--
P
Q
Q
C
N
F
--------
R
-
A
P
Q
-----
R
C
D
L
D
V
S
G
GRCS-------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
62.14
20%
-97
- C2 -
1B1U
-
IAAT_ELECO
A:
[16-110]
---------------------------------------
P
----
L
D
S
---
C
R
W
Y
V
S
T
R
---
T
CGVGPR-----------
L
A
T
Q
------------------
E
-----------------
M
K
------------
A
R
C
C
R
Q
L
E
A
I
------------
P
--------
A
Y
------
C
R
C
E
A
V
R
I
-----
L
M
D
G
V
V
----------
T
------
P
SG
Q
H
E
G
RLLQDL
P
--------
G
CP
R
Q
-
V
Q
--
R
A
F
A
P
----------------
K
L
V
-
T
--
E
V
E
C
N
L
--------
A
-
T
I
H
G
-----------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
61.66
32%
-71
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-----------------
D
--
L
C
G
-------
M
S
Q
--
D
---
E
----
L
N
E
---
C
K
P
A
V
S
K
E
---
N
P----------------
T
---------------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
------------
D
--------
F
A
------
C
L
C
G
Y
K
N
S
-----
P
---
W
L
----------
G
------
S
------------
F
--------
G
-----
V
---
D
-
P
E
L
----------------
A
S
A
-
L
--
P
K
Q
C
G
L
--------
A
-
N
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
61.15
33%
-126
- C2 -
2DS2
-
?
B:
[7-63]
------------------------------------------------------------------------------------------------------------------------
L
------------
R
Q
C
C
N
Q
L
R
Q
V
------------
D
--------
R
P
------
C
V
C
P
V
L
R
Q
-----
A
---
A
Q
----------
Q
V
L
Q
R
Q
I
I
------------
Q
--------
G
P
Q
Q
L
R
R
---
L
-
F
D
A
----------------
A
R
N
-
L
--
P
N
I
C
N
I
--------
P
-
N
--------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
58.62
17%
-89
- C2 -
1HYP
-
?
?:
[6-80]
----------------
P
S
--
C
P
-----------------
D
----
L
S
I
---
C
L
N
I
L
G
G
S
---
L
-----------------
G
---------------------
T
-----------------
V
-------------
D
D
C
C
A
L
I
G
G
L
G
D
I
E
--------
A
--------
I
V
------
C
L
C
----------
I
---
Q
L
----------
R
------
A
------------
L
--------
G
-----
I
L--
N
-
L
N
R
----------------
N
L
Q
L
I
--
L
N
S
C
G
---------
R
-
S
Y
P
S
N
--
A
T
C
P
R
T
--------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
58.49
19%
-68
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------
P
Y
G
R
G
R
T
E
--
S
G
C
-------
Y
Q
Q
--
M
---
E
E
A
EM
L
N
H
---
C
G
M
Y
L
M
K
N
---
L
-----------------
G
---------------------
E
-----------------
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
------------
D
--------
E
K
------
C
M
C
P
A
I
M
M
M
L
N
EP
M
---
W
I
----------
R
------
M
------------
R
--------
D
-----
Q
---
V
-
M
S
M
----------------
A
H
N
-
L
--
P
I
E
C
N
L
--------
M
-
S
Q
------
P
C
Q
M
---------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
55.96
16%
-84
- C2 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
--------------------
S
C
E
-------
R
Q
V
D
R
V
---
N
----
L
K
P
---
C
E
Q
H
I
M
Q
R
---
I
-----------------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
--
N
--------
T
--------
Q
G
------
C
M
C
E
A
L
Q
Q
-----
I
---
M
E
N
Q
C-------
D
------
R
L-----------
Q
--------
D
RQ---
M
V
Q
Q
F
-
K
R
E
----------------
L
M
S
-
L
--
P
Q
Q
C
N
F
--------
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
55.48
22%
-107
- C2 -
1HSS
-
IAA1_WHEAT
A:
[37-106]
-----------------------------------------------------------------------------------------------------------------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
------------
S
--------
E
W
------
C
R
C
G
A
L
Y
S
-----
M
---
L
D
----------
S
M
Y
K
---
E
------------
H
GAFPRCR
R
E
-----
V
---
V
-
K
L
T
----------------
A
A
S
-
I
--
T
A
V
C
R
L
--------
P
-
I
V
V
D
-----------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
55.26
27%
-42
* C2 *
1T12
-
NLTP1_TOBAC
A:
[3-78]
--------------------
T
C
G
-------
Q
V
T
--
S
---
N
----
L
A
P
---
C
L
A
Y
L
R
N
T
---
G
---------------------------------------------------------
P
L
------------
G
R
C
C
G
G
V
K
A
L
V
--
N
--------
S
A
RT
T
E
D
R
Q
I
A
------
C
T
C
--
L
K
S
-----
A
----
A
----------
G
------
A
------------
I
S-------
G
-----
I
---
N
-
L
G
K
----------------
A
A
G
-
L
--
P
S
T
C
G
V
--------
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
55.06
20%
-47
* C3 *
3K9G
-
?
A:
[26-267]
K
P
K
I
I
T
I
A
S
I
K
G
G
V
G
K
S
T
--
S
A
I
-------
I
L
A
--
T
---
L
----
L
S
K
N
N
K
V
L
L
I
D
M
D
T
---
Q
-----------------
A
---------------------
S
-----------------
I
T
------------
S
Y
F
Y
E
K
I
E
K
L
G
--
I
--------
N
FT------
K
F
------
N
I
Y
E
I
L
K
E
-----
N
---
V
----------------------------------------------------------------------------------
D
I
--------
D
-
S
T
I
I
N
--
V
D
N
N
L
D
L
I
P
SYLTLHNFSE
D
K
I
E
HKDF
L
L
K
T
S
L
G
T
LYYKYD
Y
I
V
I
D
T
N
PSLD
V
T
L
K
N
A
L
L
C
SD
Y
V
I
I
P
M
T
AEKW
A
V
E
S
L
D
L
F
N
F
F
V
R
K
L
NLF
L
P
I
F
L
I
I
T
RFKKNRTHK
T
L
F
E
I
L
KTKDRFL
G
T
I
S
ENK
D
Y
I
K
E
Y
E
N
I
L
E
I
F
L
K
K
I
13
HHSearch
54.06
29%
-52
- C2 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
--------------------
S
C
G
-------
Q
V
A
--
S
---
A
----
I
A
P
---
C
I
S
Y
A
R
G
Q
---
G
-----------------
S
---------------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
--
N
A
-------
A
RT
T
A
D
R
R
-
A
A
------
C
N
C
--
L
K
N
-----
A
----
A
----------
A
------
G
------------
V
S-------
G
-----
L
---
N
-
A
G
N
----------------
A
A
S
-
I
--
P
S
K
C
G
V
--------
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
53.93
24%
-40
- C2 -
1PSY
-
2SS_RICCO
A:
[12-116]
-------------
G
S
S
S
Q
--
Q
C
R
-------
Q
E
V
--
Q
RK-
D
----
L
S
S
---
C
E
R
Y
L
R
Q
S
---
S
-----------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----------------
Q
L
------------
Q
Q
C
C
N
Q
V
K
Q
V
------------
R
--------
D
E
------
C
Q
C
E
A
I
K
Y
-----
I
---
A
E
D
Q
I
Q
Q
G
QLHG
E
------
E
------------
S
--------
E
-----
R
---
V
-
A
Q
R
----------------
A
G
E
-
I
--
V
S
S
C
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
53.06
27%
-51
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[3-78]
---------------------
C
G
-------
Q
V
Q
--
G
---
N
----
L
A
Q
---
C
I
G
F
L
Q
K
G
---------------------
G
---------------------
V
-----------------
V
P
------------
P
S
C
C
T
G
V
K
N
I
L
--
N
SSRTTADR
R
--------
A
V
------
C
S
C
L
--
K
A
---------
A
A
----------
G
------
A
------------
V
R-------
G
-----
I
---
N
-
P
N
N
----------------
A
E
A
-
L
--
P
G
K
C
G
V
--------
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
52.26
26%
-58
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
--------------------
T
C
G
-------
Q
V
S
--
S
---
S
----
L
A
P
---
C
I
P
Y
V
R
G
G
---------------------
G
---------------------
A
-----------------
V
P
------------
P
A
C
C
N
G
I
R
N
V
N
--
N
L
A
RT
T
P
D
R
Q
--------
A
A
------
C
N
C
--
L
K
Q
---------
L
S
----------
A
------
S
------------
V
P-------
G
-----
V
---
N
-
P
N
N
----------------
A
A
A
-
L
--
P
G
K
C
G
V
--------
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
51.63
28%
-61
- C2 -
2LVF
-
?
A:
[17-101]
---------------------------------------
M
----
L
S
H
---
C
R
M
Y
M
R
Q
Q
M
E
E
S
-----------------
T
YQTMPRRGME-----------
P
-----------------
H
M
------------
S
E
C
C
E
Q
L
E
G
M
------------
D
--------
E
S
------
C
R
C
E
G
L
R
M
-----
M
---
M
R
----------
M
M
Q
Q
K
EM
Q
------------
P
R
-------
G
E
Q
M
R
-
R
---
M
-
M
R
L
----------------
A
E
N
-
I
--
P
S
R
C
N
L
--------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRSTTPD
M
E
A
F
K
LAPCASAAQDTTSP
V
S
S
Q
C
C
A
Q
V
K
KMGQNPP
C
L
C
A
V
M
LSNTAKSSGVQPEN
A
I
TIPKRCNIANRPVGYKCGAYTLP
48
96.26
100%
-105
- C- -
M048
-
A:
[1-192]
A
G
E
C
G
R
S
T
T
P
D
M
E
A
F
K
L
A
P
C
A
S
A
A
Q
D
T
T
S
P
V
S
S
Q
C
C
A
Q
V
K
K
M
G
Q
N
P
P
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
V
Q
P
E
N
A
I
T
I
P
K
R
C
N
I
A
N
R
P
V
G
Y
K
C
G
A
Y
T
L
P
47
88.52
100%
-95
- C- -
M047
-
A:
[1-136]
A
G
E
C
G
R
S
T
T
P
D
M
E
A
F
K
L
A
P
C
A
S
A
A
Q
D
T
T
S
P
V
S
S
Q
C
C
A
Q
V
K
K
M
G
Q
N
P
P
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
V
Q
P
E
N
A
I
T
I
P
K
R
C
N
I
A
N
R
P
V
G
Y
K
C
G
A
Y
T
L
P