@TOME V2.3
(Nov 2016)
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-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 646_tIV_THECC: (2014-05-12 )
QRVCGMSKEGFQACEPSVSSANPHPPPPSPACCMALNDADLQCFCFFKNSKMLNAYGIDFDRATALPVQCNLVKSFHC
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-.----.....10--.........----20----.--.-...--..-------.---30--------.........--------40-----------.----------.--...-----.---------...50.------.----..--------------.-.----.-----.---------60....----.--...-70.......-----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRV-C----GMSKEG---
F
Q
ACEPSVS----SA----N--P-HPP--PP-------S---P---------A
C
C
M
ALNDA--------D------------
L
----------
Q
--
C
F
C
-----
F
---------FKNS
K
M
------
L
----
N
A
--------------Y-G----I-----D---------FDRATA----L--
P
V
Q
-
C
N
L
V
KSFHC-----------------
1
Fugue
95.83
44%
-135
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
-
C
----
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
E
----
N
--
P
---
T
--
S
P
-------
S
---
Q
---------
P
C
C
T
A
L
Q
H
A
--------
D
------------
F
----------
A
--
C
L
C
-----
G
---------
Y
K
N
S
P
W
------
L
----
G
S
--------------
F
-
G
----
V
-----
D
---------
P
E
L
A
S
A
----
L
--
P
K
Q
-
C
G
L
A
N
A
P
T
C
-----------------
11
HHSearch
95.80
45%
-135
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
-
C
----
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
E
----
N
--
P
---
T
--
S
P
-------
S
---
Q
---------
P
C
C
T
A
L
Q
H
A
--------
D
------------
F
----------
A
--
C
L
C
-----
G
---------
Y
K
N
S
P
W
------
L
----
G
S
--------------
F
-
G
----
V
-----
D
---------
P
E
L
A
S
A
----
L
--
P
K
Q
-
C
G
L
A
N
A
P
T
C
-----------------
5
Fugue
66.72
24%
-106
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
-
C
----
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
N
----
L
--
G
-
E
R
S
--
Q
V
-------
S
---
P
R
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
--------
D
------------
E
----------
K
--
C
M
C
P
A
I
M
M
M
---------
L
N
E
P
M
W
------
I
----
R
M
--------------
R
-
D
----
Q
-----
V
---------
M
S
M
A
H
N
----
L
--
P
I
E
-
C
N
L
M
S
Q
-
P
C
QM---------------
12
HHSearch
65.25
27%
-113
- C4 -
1N89
1
NLT2G_WHEAT
A:
[2-67]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
Q
A
S
--
Q
---
L
A
V
C
A
S
A
I
L
----
S
G
----
A
---------
K
P
-------
S
---
G
---------
E
C
C
G
N
L
R
A
Q
--------
Q
-----------------------
G
--
C
F
C
-----
Q
---------
Y
A
K
D
P
T
------
Y
----
G
Q
----------------
Y
----
I
-----
R
---------
S
P
H
A
R
D
----
T
--
L
T
S
-
C
G
L
A
V
P
-
H
C
-----------------
19
HHSearch
62.51
27%
-75
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
C
----
G
Q
V
S
S
S
---
L
A
P
C
I
P
Y
V
R
----
G
G
-------
G
------
A
V
-------
P
---
P
---------
A
C
C
N
G
I
R
N
V
--------
N
N
L
A
RT
T
P
D
R
Q
--
A
----------
A
--
C
N
C
---------------
L
K
Q
L
--------
S
----
A
S
--------------
V
P
G
----
V
-----
N
---------
P
N
N
A
A
A
----
L
--
P
G
K
-
C
G
V
S
I
P
Y
-------------------
37
SP3
61.86
23%
-121
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
-------
E
E
A
E
M
---
L
N
H
C
G
M
Y
L
M
----
K
N
LG--
E
--
R
-
S
Q
V
--
S
P
R
M
R
E
E
D
H
K
---
Q
---------
L
C
C
M
Q
L
K
N
L
--------
D
------------
E
----------
K
--
C
M
C
P
----
A
---------
I
M
M
M
L
N
------
E
----
P
M
--------------
W
-
I
----
R
-----
M
---------
R
D
Q
V
M
S
M
A
H
N
L
--
P
I
E
-
C
N
L
M
S
Q
P
-
C
QM---------------
15
HHSearch
61.08
27%
-81
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
C
----
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
F
L
Q
----
K
G
-------
G
------
V
V
-------
P
---
P
---------
S
C
C
T
G
V
K
N
I
L
NSSRTTA
D
------------
R
----------
R
A
V
C
S
C
-----
L
----------
K
A
A
--------
A
----
G
A
--------------
V
R
G
----
I
-----
N
---------
P
N
N
A
E
A
----
L
--
P
G
K
-
C
G
V
N
I
P
Y
-------------------
3
Fugue
58.71
22%
-100
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
------
N
A
G
Q
---
L
T
V
C
T
G
A
I
--------------
A
-
G
G
A
--
R
P
-------
T
---
A
---------
A
C
C
S
S
L
R
A
Q
--------
Q
-----------------------
G
--
C
F
C
-----
Q
---------
F
A
K
D
P
R
------
Y
----
G
R
--------------
Y
------
V
-----
N
---------
S
P
N
A
R
K
----
A
--
V
S
S
-
C
G
-
I
A
L
P
T
C
H----------------
18
HHSearch
58.59
24%
-79
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
C
----
G
Q
V
T
S
N
---
L
A
P
C
L
A
Y
L
R
----
N
T
----
G
----------
P
-------
L
---
G
---------
R
C
C
G
G
V
K
A
L
--------
V
------------
N
S
A
RT
T
E
D
R
Q
I
A
--
C
T
C
---------------
L
K
S
A
--------
A
----
G
A
--------------
I
S
G
----
I
-----
N
---------
L
G
K
A
A
G
----
L
--
P
S
T
-
C
G
V
N
I
P
Y
-------------------
27
HHSearch
58.07
26%
-59
- C4 -
1BEA
-
ITRF_MAIZE
A:
[14-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
--
P
---
R
--
L
P
W
P
E
L
---
K
---
R
---------
R
C
C
R
E
L
A
D
I
--------
P
------------
A
----------
Y
--
C
R
C
-----
T
---------
A
L
S
I
L
M
D
G
A
I
P
P
G
----
P
D
A-------------
Q
-
L
E
G
R
L
E
-----
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
----
L
VT
E
A
E
-
C
N
L
A
T
I
--------------------
34
SP3
57.38
17%
-98
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
C
YPGQ
A
F
Q
V
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
----
C
--
N
-
G
S
Q
--
V
P
-------
E
A
V
L
R
---------
D
C
C
Q
Q
L
A
H
I
--------
S
------------
E
----------
W
--
C
R
C
-----
G
A
L
Y
S
M
L
D
S
M
Y
K
E
H
G
A
------
F
----
P
-----------------
R
----
C
-----
R
R
E
V
V
-----
K
L
T
A
A
S
----
I
--
T
A
V
-
C
R
L
P
I
V
V
D
A
SGDGAYVC
K
D
V
A
A
YPDA
29
HHSearch
56.11
21%
-48
* C4 *
1HSS
-
IAA1_WHEAT
A:
[14-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
----
C
N
G
S
Q
V
P
E
--
A
V
-------
L
---
R
---------
D
C
C
Q
Q
L
A
H
I
--------
S
------------
E
----------
W
--
C
R
C
-----
G
---------
A
L
Y
S
M
L
D
S
M
Y
K
E
H
---------------------------
G
-----
A
FPRCR
R
E
V
V
K
L
T
A
A
S
----
I
--
T
A
V
-
C
R
L
P
I
V
V
D
------------------
33
SP3
55.13
19%
-100
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
----
N
A
G
Q
-----
L
T
V
C
T
G
A
I
A
----
G
G
----
A
--
R
-------
P
-------
T
---
A
---------
A
C
C
S
S
L
R
A
Q
--------
Q
-----------------------
G
--
C
F
C
-----
Q
---------
F
A
K
D
P
R
------
Y
----
G
R
--------------
Y
------
V
-----
N
---------
S
P
N
A
R
K
----
A
--
V
S
S
-
C
G
I
A
-
L
P
T
C
H----------------
26
HHSearch
54.67
29%
-100
- C4 -
3OB4
-
?
A:
[429-488]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---------
R
C
C
N
E
L
N
E
F
EN------
N
------------
Q
----------
R
--
C
M
C
-----
E
---------
A
L
Q
Q
I
M
------
E
N
Q
S
D
R
L
--------------
Q
-
G
----
R
-----
Q
Q
E
Q
Q
F
----
K
R
E
L
R
N
----
L
--
P
Q
Q
-
C
G
L
R
A
P
Q
R
C
-----------------
32
SP3
54.09
15%
-84
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
----
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
--
S
------
G
P
-------
S
---
A
---------
G
C
C
S
G
V
R
S
L
--------
N
N
A
ART
T
A
D
R
R
A
A
C
----------
N
--
C
L
K
-----
N
---------
A
A
A
G
--------------
V
--------------
S
-
G
----
L
-----
N
---------
A
G
N
A
A
S
----
I
--
P
S
K
-
C
G
V
S
I
P
Y
T
I
STSTDCSRVN-------
28
HHSearch
54.07
23%
-52
- C4 -
1B1U
-
IAAT_ELECO
A:
[13-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
N
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
--
P
-
R
L
A
T
Q
E
M
-------
K
---
A
---------
R
C
C
R
Q
L
E
A
I
--------
P
------------
A
----------
Y
--
C
R
C
-----
E
---------
A
V
R
I
L
M
------
D
----
G
V
V
T
PSG
Q
H
E
G
RLLQD
L
P
G
CP--
R
-----
Q
V
Q
R
A
-----
F
A
P
K
L
V
----
T
--
E
V
E
-
C
N
L
A
T
I
--------------------
14
HHSearch
53.45
22%
-60
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
C
----
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
--
S
------
G
P
-------
S
---
A
---------
G
C
C
S
G
V
R
S
L
--------
N
------------
N
A
A
RT
T
A
D
R
R
A
A
--
C
N
C
---------------
L
K
N
A
--------
A
----
A
G
--------------
V
S
G
----
L
-----
N
---------
A
G
N
A
A
S
----
I
--
P
S
K
-
C
G
V
S
I
P
Y
-------------------
17
HHSearch
51.52
22%
-64
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
C
----
G
H
V
D
S
L
---
V
R
P
C
L
S
Y
V
Q
----
G
G
-------
P
------
G
P
-------
S
---
G
---------
Q
C
C
D
G
V
K
N
L
--------
H
------------
N
Q
ARS
Q
S
D
R
Q
S
A
--
C
N
C
-----
L
---------
K
G
I
A
R
G
------------
I
--------------
H
-
N
----
L
-----
N
---------
E
D
N
A
R
S
----
I
--
P
P
K
-
C
G
V
N
L
P
Y
-------------------
23
HHSearch
51.19
26%
-108
- C4 -
1SM7
-
?
A:
[45-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
E
---------
Q
C
C
N
E
L
Y
Q
E
--------
D
------------
Q
----------
V
--
C
V
C
-----
P
---------
T
L
K
Q
A
A
------
K
----
S
V
RVQGQ---------
H
-
G
----
P
FQST
R
I
---------
Y
Q
I
A
K
N
----
L
--
P
N
V
-
C
N
M
K
Q
I
G
T
C
-----------------
2
Fugue
50.76
13%
-155
* C3 *
3KK7
3
?
A:
[19-541]
TSEIILQERNSSLPRVWSKKTFTDATDFLG
C
S
Y
A
V
ENGTSIIGDFANAKYPVVN
M
K
K
L
L
E
R
YPSY
I
N
P
K
E
L
R
T
T
E
T
K
A
L
S
Y
SDFDRLEKNK
T
F
T
K
T
VKSGFSLNL
G
P
F
K
F
G
R
Q
K
T
I
K
E
T
F
VHNTDDSEK
V
V
H
G
E
L
S
I
E
VVN
G
M
L
N
L
QTA
P
S
A
L
R
K
I
A
A
DYLD
E
L
F
V
D
A
L
Y
NSS
M
V
E
L
M
Q
S
YGEFVLT
G
Y
Y
T
G
G
R
A
S
A
L
F
Y
G
V
D
TNSIQ
F
D
S
K
E
K
D
M
D
V
A
I
N
A
S
Y
E
W
K
NKKPTG
N
L
S
I
G
T
K
R
E
N
S
E
T
I
T
N
K
F
S
A
L
S
Y
S
I
K
T
L
G
GAYGYSISTPPYDITN
Y
S
I
D
L
T
P
W
L
Q
S
L
NDPKTHTMIDLQDGGLYP
I
S
D
F
I
LE
E
N
F
K
Q
R
Y
N
D
T
H
M
DFQYQE
S
L
E
E
P
Y
I
E
I
I
K
M
Y
I
RKSNSG
E
K
L
Y
D
I
V
P
V
L
N
T
RQG
D
K
L
I
FSNPDAASQS
D
E
E
L
K
A
N
S
I
P
A
T
F
L
T
K
S
N
A
I
K
D
E
K
S
K
Y
YQ
L
K
I
K
A
D
PN
K
T
I
N
PIIQL
S
F
Q
I
-
N
----
N
V
D
E
K
G
M
--
Y
K
F
K
N
A
N
T
N
---------------------------------------------
I
W
Y
I
Y
N
P
--------
T
------------
S
M---------
Y
--
C
F
A
-----
Y
---------
Y
D
D
D
Y
I
------
P
----
D
A
--------------
Y
-
G
----
I
-----
L
D
W
-------
V
N
G
I
P
I
----
K
--
A
V
T
M
T
T
L
Y
Q
R
Y
K
I
Y
G
L--------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QRVCGMSKEG
F
Q
ACEPSVSSANPHPPPPSPA
C
C
M
ALNDAD
L
Q
C
F
C
F
FKNS
K
M
L
N
A
YGIDFDRATAL
P
V
Q
C
N
L
V
KSFHC
46
92.42
100%
-146
- C- -
M046
-
A:
[1-102]
Q
R
V
C
G
M
S
K
E
G
F
Q
A
C
E
P
S
V
S
S
A
N
P
H
P
P
P
P
S
P
A
C
C
M
A
L
N
D
A
D
L
Q
C
F
C
F
F
K
N
S
K
M
L
N
A
Y
G
I
D
F
D
R
A
T
A
L
P
V
Q
C
N
L
V
K
S
F
H
C
40
89.50
100%
-137
- C- -
M040
-
A:
[1-102]
Q
R
V
C
G
M
S
K
E
G
F
Q
A
C
E
P
S
V
S
S
A
N
P
H
P
P
P
P
S
P
A
C
C
M
A
L
N
D
A
D
L
Q
C
F
C
F
F
K
N
S
K
M
L
N
A
Y
G
I
D
F
D
R
A
T
A
L
P
V
Q
C
N
L
V
K
S
F
H
C
44
89.27
100%
-150
- C- -
M044
-
A:
[1-112]
Q
R
V
C
G
M
S
K
E
G
F
Q
A
C
E
P
S
V
S
S
A
N
P
H
P
P
P
P
S
P
A
C
C
M
A
L
N
D
A
D
L
Q
C
F
C
F
F
K
N
S
K
M
L
N
A
Y
G
I
D
F
D
R
A
T
A
L
P
V
Q
C
N
L
V
K
S
F
H
C