@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0779: (2015-12-04 )
MGVDIVFRYKDDYNEFVKLLDLKKHSYICRSRQDEKGSDVLLKHMHDKKDRATIKMLMPNKCAVFVSKDRANKFIKNTLKIEVEVLSS
Atome Classification :
(19 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--......--10....----....20........30........40.....-..--------.50-----.....----....60.....----...70-------...-.....-----80--------.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG
V
--
D
I
V
F
R
Y--KD
D
Y
N
E
----
F
V
K
L
L
DLKK
H
S
Y
I
CRSRQDEK
G
S
D
V
L
L
K
H
MH-DK--------KD------
R
A
T
I
K
----
M
LMPN
K
C
A
V
F
V
----S
K
D
R
A
-------
N
K
F
-
I
KN
T
L
-----
K
I
--------
E
V
E
V
LSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
89.83
27%
-100
- C4 -
4Z2T
1
?
A:
[11-591]
AETD
V
L
I
V
G
AG
P
A
G
A
M
S
A
T
L
L
A
S
L
G
I
R
S
L
M
I
N
RWRSTSPGPRSHIIN
Q
R
T
M
E
I
L
R
D
I
GL
E
E
S
A
K
S
L
AVPKEYMG
E
H
V
Y
A
TSLAGEEFGRIPAWASH
P
Q
A
H
A
E
H
E
L
A
SP
S
R
Y
C
D
L
P
Q
L
Y
F
E
P
M
V
V
S
E
A
A
L
R
G
A
D
V
R
F
LTEYL
G
H
V
E
D
QD
G
V
T
A
R
L
L
D
HVSG
A
E
Y
E
V
R
A
KYIIGADGAHS
L
V
A
Q
N
A
G
L
P
F
E
GQ
M
G
G
--
S
I
N
I
E
F
--
S
A
D
L
S
S
----------------
L
C
E
H
R
K
G
D
------
M
Y
Y
M
F
-------------------
V
A
A
L
R
----
M
I
R
P
W
N
K
W
I
C
V
W
GEI
T
K
E
E
A
-------
K
K
I
-
I
H
E
I
I
GTDEI
P
V
--------
E
V
G
P
I
S
T
W
T
I
N
Q
Q
Y
A
VRNTSGR
V
F
C
M
G
DAV
H
R
H
T
PMGGL
G
L
N
T
S
V
Q
D
A
Y
N
L
A
W
K
L
A
L
V
L
K
GTAAPTLLDS
Y
D
A
E
R
S
P
V
A
K
Q
I
V
E
R
A
F
K
S
L
S
T
F
P
P
V
F
E
A
L
SLPPAPT
E
S
E
M
A
E
A
L
V
R
L
K
DAS
E
E
G
A
K
R
R
A
A
L
R
K
A
M
D
A
T
IIGLGGGHGVELN
Q
R
Y
V
S
RAVFPDGTPDPGFVRDQEF
F
Y
Q
A
S
TRPGAHL
P
H
V
W
L
T
E
NQ
R
R
I
S
T
L
D
L
C
GKG
R
F
T
L
L
T
G
LSGAA
W
K
H
E
A
E
Q
V
S
Q
S
L
G
I
E
L
K
V
C
VIGPGQEFVDTYGEYAKISEIGES
G
A
L
L
V
R
PDMFIAFRAKDAS
R
E
G
L
E
Q
L
N
V
A
V
K
S
I
L
GR
22
Fugue
67.18
19%
-40
- C5 -
2HG6
-
?
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
TS
T
D
I
C
Q
A
--
A
D
A
L
K
G
----
F
V
G
F
N
R
-
K
T
G
R
Y
I
V
R
F
S
E
D
S
F
G
M
D
V
A
D
D
S
I
T
-
P
T
--------
S
E
FVWSSV
R
D
D
V
M
----
R
L
G
R
E
Q
L
Q
I
L
L
----
E
Q
N
I
N
-------
E
R
L
N
I
G
E
P
L
-----
L
V
Y
L
R
RQDLP
E
I
T
A
Q
R
Q
LR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
63.48
31%
-80
- C7 -
1XNF
1
NLPI_ECOLI
A:
[133-176]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
L
A
F
Y
--
Q
D
D
P
N
D
----
P
F
R
S
L
W
L
----
Y
L
A
E
Q
K
L
D
E
K
Q
A
K
E
V
L
K
Q
H
F
-
E
K
--------
S
D
------
K
E
Q
W
G
----
W
N
I
V
E
F
Y
L
G
N
I
----
S
E
Q
T
L
-------
M
E
R
-
L
K
A
D
A
-----
T
D
--------
N
T
S
L
A
E
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
63.19
18%
-4
- C5 -
1LGR
-
?
?:
[1-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
--
E
H
V
L
T
M
--
L
N
E
H
E
------
V
K
F
V
D
L
R
F
T
D
T
K
G
K
E
Q
H
V
T
I
P
A
H
Q
V
N
A
E
F
F
-
E
E
G
K
M
-----
F
D
------
G
S
S
I
G
GWD
M
V
L
M
P
D
A
S
T
A
V
I
----
D
P
F
F
A
-------
D
S
-----
T
L
-----
I
I
--------
R
C
D
I
L
E
P
GTLQGY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
61.91
28%
-51
* C6 *
4DZI
1
?
A:
[8-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
I
D
V
D
N
H
Y
Y
--------
E
P
L
D
S
F
T
R
H
L
D
-
K
K
--------
F
K
------
R
R
G
V
Q
----
M
L
S
D
G
K
R
T
W
A
V
----
I
G
D
R
V
-------
N
H
F
-
I
P
N
P
T
-----
F
D
--------
P
I
I
V
P
G
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
61.12
12%
-9
- C5 -
2LU2
-
?
A:
[58-138]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
T
--
R
L
M
V
T
E
--
K
Q
E
S
K
N
----
F
S
K
M
A
K
----
S
Q
S
F
S
T
R
I
E
E
L
G
G
S
I
S
F
L
----
T
E
--------
T
G
------
V
T
M
I
E
----
L
P
K
T
V
S
E
H
D
M
D
----
Q
L
L
H
D
-------
I
L
A
-
A
G
G
V
V
-----
G
L
--------
D
S
E
V
K
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
60.83
15%
-42
* C5 *
2KL8
-
?
A:
[1-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
M
--
D
I
R
F
R
G
D
D
L
E
A
F
E
K
----
A
L
K
E
M
I
R
Q
A
R
K
F
A
G
T
V
T
Y
T
L
D
G
N
D
L
E
I
R
I
T
G
V
P
E
--------
Q
V
------
R
K
E
L
A
----
K
E
A
E
R
L
A
K
E
F
-----------------
N
I
T
-
V
T
Y
T
I
-----
R
L
--------
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
45.96
17%
-14
- C3 -
2KLN
-
?
A:
[1-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------MHDIDDYP
Q
A
K
R
VPG
L
V
V
Y
RYDAPLCFANAE
D
F
R
--
R
R
A
L
T
V
--
V
D
Q
D
P
G
----
Q
V
E
W
F
V
L
N
A
E
S
N
---
V
E
V
D
L
T
A
L
D
A
L
D
Q
L
R
T
-
E
L
--------
L
R
------
R
G
I
V
F
----
A
M
A
R
V
K
Q
D
L
R
E
----
S
L
R
A
A
SLLDKIG
E
D
H
-
I
F
M
T
L
-----
P
T
--------
A
V
Q
A
F
R
R
R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
43.22
13%
-6
- C5 -
4CWC
-
REPD_STAAU (first)
A:
[6-275]
-------------------------------------------------------------------------------------------P
Q
P
E
L
S
F
D
A
M
T
I
V
G
N
L
N
K
T
N
A
K
K
L
S
D
F
M
S
T
EPQIRLWDILQT
K
F
K
A
K
A
LQEK
V
Y
I
E
Y
D
K
V
K
A
D
S
WDRRN
M
R
V
E
F
N
PNKLT
H
E
E
M
L
W
L
K
Q
N
IIDYMEDDGF
T
R
L
--
D
L
A
F
D
F
--
E
D
D
L
S
D
----
Y
Y
A
M
T
D
K
A
V
K
K
T
I
F
Y
G
R
N
G
K
P
E
T
K
Y
F
-------
G
--------
V
R
------
D
S
D
R
F
----
I
R
I
Y
N
K
K
Q
E
R
K
----
D
N
A
D
V
-------
E
V
M
-
S
E
H
L
W
-----
R
V
--------
E
I
E
L
K
R
D
MVDYWNDCFND
L
H
I
L
K
P
D
WSSLEK
V
K
D
Q
A
M
I
Y
M
L
I
H
E
ESTWGKLE
R
R
T
K
N
K
Y
R
E
M
L
K
S
I
SEIDL
T
D
L
M
K
L
T
L
K
E
N
E
K
Q
L
Q
K
Q
I
E
F
W
Q
R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.51
11%
-8
- C2 -
2LOR
-
TM141_HUMAN
A:
[1-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
N
--
L
G
L
S
R
V
--
D
D
A
V
A
A
K
H
PG
L
G
E
Y
A
A
C
Q
S
H
A
F
M
K
G
V
F
T
F
V
T
G
T
G
M
A
F
G
L
Q
M
-
F
I
Q
R
KFPYPL
Q
W
------
S
L
L
V
A
----
V
V
A
G
S
V
V
S
Y
G
V
----
T
R
V
E
S
-------
E
K
C
-
N
N
L
W
L
-----
F
L
--------
E
T
G
Q
L
P
K
D
R
S
T
DQRS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
35.08
18%
32
- C7 -
2LD7
-
SIN3A_MOUSE
B:
[478-494]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
Y
E
N
----
F
L
R
C
L
V
I
F
N
Q
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.79
28%
-12
* C7 *
3NM7
2
?
A:
[57-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
V
Y
--
E
E
N
I
N
E
----
F
E
S
N
L
L
K
-
A
I
A
V
I
K
Q
K
V
S
T
G
S
S
A
R
H
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
31.51
28%
-7
- C7 -
3N8B
1
?
A:
[50-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
V
Y
--
E
E
N
M
N
E
----
F
E
S
N
L
L
K
-
A
I
A
V
I
K
Q
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
31.50
30%
15
- C7 -
1WOV
1
HO2_SYNY3
A:
[216-235]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
G
E
H
T
F
D
L
L
T
R
Q
D
R
P
G
S
T
E
G
H
P
I
T
L
-
M
V
--------
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
23.70
10%
-42
- C6 -
2HBA
-
RL9_GEOSE
A:
[28-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
F
L
F
K
Q
G
L
A
I
E
A
----
T
P
A
N
L
-------
K
A
L
-
E
A
Q
K
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
20.88
56%
6
- C7 -
1Q8D
-
A:
[8-23]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
D
S
C
K
T
N
Y
I
C
R
S
R
L
A
D
F
F
T
N
C
Q
P
E
S
R
S
-
V
S
--------
N
C
------
L
K
E
N
Y
----
A
D
C
L
L
A
Y
S
G
L
I
----
G
T
V
M
T
-------
P
N
V
-
A
P
W
C
D
-----
C
S
--------
N
S
G
N
D
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
20.66
39%
0
- C8 -
2YZC
1
URIC_ARTGO
A:
[238-255]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
------
I
D
E
I
K
----
M
S
L
P
N
K
H
H
F
L
V
----
D
L
Q
P
F
-------
G
Q
D
-
N
P
N
E
V
-----
F
Y
--------
A
A
D
R
P
Y
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
17.43
35%
23
- C1 -
3V68
-
?
A:
[125-141]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
--
K
I
Q
P
R
Y
--
E
E
D
H
I
N
----
F
T
A
R
Y
G
S
W
I
V
V
K
R
M
I
I
D
E
K
T
P
L
L
D
I
A
R
L
L
A
S
-
I
N
--------
E
T
------
A
V
N
K
I
----
K
D
F
A
D
V
D
D
K
K
I
----
V
E
Y
F
G
-------
G
F
K
-
K
V
K
K
E
-----
E
E
--------
I
K
E
I
V
Q
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
4.60
7%
85
* C8 *
3WLV
2
PUCL_BACSB
A:
[258-272]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
------
L
Q
E
V
Y
----
F
E
S
Q
N
H
T
W
D
K
I
----
V
E
E
I
P
-------
E
S
E
-
G
K
V
Y
T
-----
E
P
--------
R
P
P
Y
G
F
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------