@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1908: (2016-03-30 )
MVKVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELINGVFTDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEELDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDGSVRNDLVQLQRKFRRVN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20-------.........30........40-----....------..---------------.--.50.......----.60..----...-..------.70........80........90...-.....100.......110..-----.....120.......130--.........140--.....----...150....------------...160.-------......170.......---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK
V
A
N
K
Y
A
K
A
L
F
D
V
SLDTN--------
N
L
E
T
I
N
E
E
L
T
V
I
N
E
A
V
K
D
K
I
E
-----
Q
L
K
M------VD---------------S--NPT
Q
T
A
E
Q
R
R
----
E
L
I
N
G
----
V
FT-D
I
------
N
P
Y
I
K
N
M
M
Y
V
LADNR
H
I
S
L
I
A
D
V
F
K
A
-
F
Q
S
L
YNGHYNQ
D
F
A
T
I
E
S
T
Y-----EL
S
Q
E
E
L
D
K
I
V
K
L
V
T
Q
----QTK
L
S
K
V
I
V
DT---KINPD----LI
G
G
F
R
V
K
V
G
------------
T
T
V
LDG
S
-------
V
R
N
D
L
V
Q
L
Q
R
K
F
RRVN---------------
4
PsiBlast_PDB
92.76
24%
-96
- C4 -
2A7U
1
ATPD_ECOLI
B:
[4-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
V
A
R
P
Y
A
K
A
A
F
D
F
A
V
E
H
Q
--------
S
V
E
R
W
Q
D
M
L
A
F
A
A
E
V
T
K
N
--
E
-----
Q
M
A
E
------
L
L
---------------
S
--
G
A
L
A
P
E
T
L
A
E
----
S
F
I
A
V
----
C
G
E
-
Q
L
------
D
E
N
G
Q
N
L
I
R
V
M
A
E
N
G
R
L
N
A
L
P
D
V
L
E
Q
-
F
I
H
L
R
A
V
S
E
A
T
----------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
91.98
24%
-95
- C4 -
1ABV
-
ATPD_ECOLI
A:
[4-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
V
A
R
P
Y
A
K
A
A
F
D
F
A
V
E
H
Q
--------
S
V
E
R
W
Q
D
M
L
A
F
A
A
E
V
T
K
N
--
E
-----
Q
M
A
E
------
L
L
---------------
S
--
G
A
L
A
P
E
T
L
A
E
----
S
F
I
A
V
----
C
G
E
-
Q
L
------
D
E
N
G
Q
N
L
I
R
V
M
A
E
N
G
R
L
N
A
L
P
D
V
L
E
Q
-
F
I
H
L
R
A
V
S
E
A
T
----------------------------------------------------------------------------------------------------------------------------
23
HHSearch
85.94
25%
-105
- C4 -
1ABV
-
ATPD_ECOLI
A:
[3-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
T
V
A
R
P
Y
A
K
A
A
F
D
F
A
V
E
H
Q
--------
S
V
E
R
W
Q
D
M
L
A
F
A
A
E
V
T
K
--
N
E
-----
Q
M
A
E
------
L
L
---------------
S
--
G
A
L
A
P
-
E
T
L
A
----
E
S
F
I
A
----
V
C
G
E
Q
L
------
D
E
N
G
Q
N
L
I
R
V
M
A
E
N
G
R
L
N
A
L
P
D
V
L
E
Q
-
F
I
H
L
R
A
V
S
E
A
T
----------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
82.94
23%
-107
- C4 -
2JMX
1
ATPO_BOVIN
A:
[14-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
G
R
Y
A
T
A
L
Y
S
A
A
S
K
Q
N
--------
K
L
E
Q
V
E
K
E
L
L
R
V
G
Q
I
L
K
E
P
---------
K
M
------
A
A
---------------
S
L
L
N
P
Y
----
V
K
R
----
S
V
K
V
K
----
S
L
S
-
D
M
T
A
K
E
KF
S
P
L
T
S
N
L
I
N
L
L
A
E
N
G
R
L
T
N
T
P
A
V
I
S
A
-
F
S
T
M
M
S
V
H
R
G
E
V
P
C
T
V
-----------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.70
23%
-102
- C4 -
2BO5
-
ATPO_BOVIN
A:
[14-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
G
R
Y
A
T
A
L
Y
S
A
A
S
K
Q
N
--------
K
L
E
Q
V
E
K
E
L
L
R
V
G
Q
I
L
K
E
P
---------
K
M
------
A
A
---------------
S
L
L
N
P
Y
----
V
K
R
----
S
V
K
V
K
----
S
L
S
-
D
M
T
A
K
E
KF
S
P
L
T
S
N
L
I
N
L
L
A
E
N
G
R
L
T
N
T
P
A
V
I
S
A
-
F
S
T
M
M
S
V
H
R
G
E
V
P
C
T
V
-----------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
78.97
23%
-102
- C4 -
4B2Q
-
ATPO_BOVIN
W:
[14-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
G
R
Y
A
T
A
L
Y
S
A
A
S
K
Q
N
--------
K
L
E
Q
V
E
K
E
L
L
R
V
G
Q
I
L
K
E
P
---------
K
M
------
A
A
---------------
S
LL
N
P
Y
----
V
K
R
----
S
V
K
V
K
----
S
L
S
-
D
M
TAKEKF
S
P
L
T
S
N
L
I
N
L
L
A
E
N
G
R
L
T
N
T
P
A
V
I
S
A
-
F
S
T
M
M
S
V
H
R
G
E
V
P
C
T
V
-----------------------------------------------------------------------------------------------------------------------
40
Fugue
58.75
8%
-65
- C3 -
2UXU
1
TTGR_PSEPT
A:
[5-210]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
K
E
E
A
Q
E
T
R
A
Q
I
I
E
A
A
E
R
A
F
Y
K
R
G
V
A
R
T
--------
T
L
A
D
I
A
E
L
A
G
V
T
R
G
A
I
Y
W
H
F
N
N
K
A
E
L
V
Q
A
L
------
L
D
---------------
S
--
L
H
E
T
H
D
H
L
A
R
----
A
S
E
S
E
DEVD
P
L
G
-
C
M
------
R
K
L
L
L
Q
V
F
N
E
L
V
L
D
A
R
T
R
R
I
N
E
I
L
H
H
--
K
C
E
F
T
D
D
M
C
E
I
R
Q
Q
R
Q
S
A
V
-----
L
D
C
H
K
G
I
T
L
A
L
A
N
A
V
R
----
R
G
Q
L
P
G
E
L
D
A
E
---
R
A
A
V
A
----
M
F
A
Y
V
D
G
L
I
R
------------
R
W
L
L
L
P
D
SVDLLGD
V
E
K
W
V
D
T
G
L
D
M
L
R
L
S
P
ALRK-----------
39
Fugue
54.76
16%
-41
- C1 -
1FBX
2
GCH1_ECOLI
A:
[1-221]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PS
L
S
K
E
A
A
L
V
H
E
A
L
V
A
R
G
L
E
T
P
LRPPVHEM---
D
N
E
T
R
K
S
L
I
A
G
H
M
T
E
I
M
Q
-----
L
L
N
L
DLADDS
L
M
---------------
E
--
T
P
H
R
I
A
K
M
Y
V
----
D
E
I
F
S
----
G
L
D
---------
Y
A
N
F
P
K
I
T
L
I
E
N
K
M
K
V
D
E
M
V
T
V
R
D
I
T
-
L
T
S
T
C
E
H
H
F
V
T
I
D
G
K
A
T
V
A
Y
I
P
K
DS
V
I
G
L
S
K
I
N
R
I
V
Q
F
F
A
Q
RPQV
Q
E
R
L
T
Q
Q
I
L
I
A
L
Q
T
L
L
G
T
N
N
V
A
V
S
I
D
A
V
H
Y
C
V
K
ARGIRDA
T
S
A
T
T
T
T
S
L
G
G
L
-------
F
K
S
S
Q
N
T
R
H
E
F
L
R
A
V
R
HHN------------
38
Fugue
54.59
11%
-24
- C3 -
1PIE
2
GAL1_LACLA
A:
[29-416]
T
V
L
S
A
L
T
E
K
F
A
E
V
F
GDTKE
V
E
Y
F
F
S
P
G
R
I
N
LIGEHTDYNG
G
Y
V
F
P
A
S
I
TI
G
T
T
G
L
A
R
L
R
EDK
K
V
K
L
Y
S
ENFPKLG
V
I
E
F
D
LDEVEKKDGELWS
N
Y
V
K
G
M
I
V
M
L
K
G
A
GYEID
K
G
F
E
L
L
I
K
G
EIPTASGLS
S
S
A
S
L
E
L
L
V
G
V
V
L
D
D
L
FNLNVP
R
L
E
L
V
Q
L
G
Q
K
T
E
N
DYIG
V
N
S
G
IL
D
Q
F
A
I
G
F
GEVKKAIELDCNTL
K
Y
E
M
V
P
VELRDYDI
V
I
M
N
T
N
K
P
R
-------
A
L
T
E
S
--------
K
Y
N
E
R
F
A
E
T
R
E
A
L
K
R
M
Q
T
R
L
D
-----
I
Q
S
L
------
G
E
---------------
L
--
S
N
E
E
F
D
A
N
T
D
----
L
I
G
D
-----------------
E
T
L
I
K
R
A
R
H
A
V
Y
E
N
N
R
T
K
I
A
Q
K
A
F
V
A
G
N
L
T
K
F
G
E
L
L
N
A
S
H
A
S
L
K
D
D
Y
-----
E
V
T
G
L
E
L
D
T
L
A
E
T
A
Q
K
----
Q
A
G
----
V
L
G
A
---
R
M
T
G
A
----
G
F
G
G
C
A
I
A
L
V
------------
A
H
D
N
V
S
A
-------
F
R
K
A
V
G
Q
V
Y
E
E
V
V
G
Y
P
A
S
F
Y
V
A
Q
I
G
S
G
S
TKL
7
PsiBlast_PDB
54.01
24%
-10
- C4 -
3ZTV
1
5NTD_HAEIN
A:
[434-532]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--------
T
L
Y
T
Y
K
M
E
G
S
L
V
K
Q
V
L
E
D
A
M
------
Q
F
A
L
------
V
D
GSTGA
F
P
Y
G
A
G
I
R
Y
E
A
--
N
E
T
P
N
A
E
G
K
R
LV
S
V
E
V
L
N
K
-----
T
Q
-
Q
W
------
E
P
I
D
D
N
K
R
Y
L
V
G
T
N
A
Y
V
A
G
G
K
D
G
Y
K
T
-
F
G
K
L
F
N
---------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
53.71
24%
-10
- C4 -
3ZU0
1
5NTD_HAEIN
A:
[434-532]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--------
T
L
Y
T
Y
K
M
E
G
S
L
V
K
Q
V
L
E
D
A
M
------
Q
F
A
L
------
V
D
GSTGA
F
P
Y
G
A
G
I
R
Y
E
A
--
N
E
T
P
N
A
E
G
K
R
LV
S
V
E
V
L
N
K
-----
T
Q
-
Q
W
------
E
P
I
D
D
N
K
R
Y
L
V
G
T
N
A
Y
V
A
G
G
K
D
G
Y
K
T
-
F
G
K
L
F
N
---------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
53.09
31%
-61
- C4 -
3H60
2
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
52.16
31%
-52
- C4 -
4JA7
2
PPP5_RAT
A:
[245-287]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
52.05
31%
-61
- C4 -
3H68
3
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.94
31%
-51
- C4 -
4JA9
2
PPP5_RAT
A:
[245-287]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
51.81
31%
-62
- C4 -
3H67
3
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
51.25
31%
-65
- C4 -
3H62
3
C:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
51.11
31%
-58
- C4 -
3H64
3
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
50.69
31%
-62
- C4 -
3H66
2
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
50.66
31%
-58
- C4 -
3H61
3
PPP5_HUMAN
A:
[81-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
G
----
L
P
S
-
E
T
------
N
P
Y
I
F
N
G
D
F
V
D
R
G
S
F
S
V
E
V
I
L
T
L
F
-
G
-
F
K
L
L
Y
P
D
H
F
H
-----------------------------------------------------------------------------------------------------------------------------