@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1393: (2015-12-23 )
MCGNGRFIKKVENSIELLQLNDNPKA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.......--10.-..------...-..-.20-.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MC-GNGRFIK--K-V-EN------SIE-LL-QLN-DNPKA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
76.62
30%
-84
- C3 -
2PE4
10
HYAL1_HUMAN
A:
[1-417]
R
S
F
R
G
PLLPNRP
F
T
T
V
WNAN
T
Q
W
C
L
E
R
HG
V
D
V
D
VSVFD
V
V
A
N
PGQTFRGPD
M
T
I
F
Y
SSQL
G
T
Y
P
Y
Y
T
PT
G
E
P
V
FGGLPQNAS
L
I
A
H
L
A
R
T
F
Q
D
I
L
A
A
I
PAPDFSGLA
V
I
D
W
E
AWRPRWAFNWDTKD
I
Y
R
Q
R
S
R
A
L
V
Q
A
Q
H
PDWP
A
P
Q
V
E
A
V
A
Q
D
Q
F
Q
G
A
A
R
A
W
M
A
G
T
L
Q
L
G
R
A
L
RPRGL
W
G
F
Y
GFPDCYNYDFLSPNYTGQCPSG
I
R
A
Q
N
D
Q
L
G
W
L
W
G
Q
SR
A
L
Y
P
S
IYMPAVLEGTGK
S
Q
M
Y
V
Q
H
R
V
A
E
A
F
R
V
A
V
A
A
GDPNL
P
V
L
P
Y
V
Q
IFYDTTNHFLP
L
D
E
L
E
H
S
L
G
E
S
A
A
Q
GAA
G
V
V
L
W
V
S
WENTRT
K
E
S
C
Q
A
I
K
E
Y
M
D
T
T
L
G
P
F
I
L
N
V
T
S
G
A
L
L
C
S
Q
A
L
C
S
G
H
G
R
C
V
R
--
R
-
T
-
S
H
------
P
K
A
-
L
L
-
L
L
N
-
P
A
S
F
S
I
Q
L
T
P
GGG
P
L
S
L
R
G
A
L
S
L
E
D
Q
A
Q
M
A
V
E
F
KCRCYPGWQAPWCERKSMWT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
70.66
34%
-33
- C5 -
4ZOX
-
SQT1_YEAST
A:
[3-381]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSNNSL
T
Y
F
D
KHTDSVF
A
I
G
H
H
PNLP
L
V
C
T
G
GGDN
L
A
H
L
W
T
SHSQPPKFA
G
T
L
T
GYGESVI
S
C
S
F
T
SEGG
F
L
V
T
A
D
MSG
K
V
L
V
H
M
G
Q
KGGAQWKLA
S
Q
M
Q
EVEEIV
W
L
K
T
HPTIAR
T
F
A
F
G
A
TDG
S
V
W
C
Y
Q
I
N
EQDG
S
L
E
Q
L
M
S
G
F
VHQQ
D
C
-
S
M
G
E
F
I
N
TD
K
-
G
-
E
N
------
T
L
E
-
L
V
-
T
C
S
-
L
D
S
T
I
V
A
W
NCFTGQQL
F
K
I
T
QAEIKGLEAPWI
S
L
S
L
A
PETLTKGNS
G
V
V
A
C
G
S
NNG
L
L
A
V
I
N
CNNGGAIL
H
L
S
T
V
I
E
L
K
PEQDELDASIE
S
I
S
W
S
SKFS
L
M
A
I
G
L
VCG
E
I
L
L
Y
DTSAWRVR
H
K
F
V
L
EDSVT
K
L
M
F
D
ND
D
L
F
A
S
C
ING
K
V
Y
Q
F
NARTGQEK
F
V
C
V
GHNMGVL
D
F
I
L
L
H
PVANTG
T
E
Q
K
R
K
V
I
T
A
G
DEG
V
S
L
V
F
E
V
P
N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
70.26
42%
-84
- C7 -
1OXZ
-
GGA1_HUMAN
A:
[265-287]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
A
S
--
D
-
T
-
E
D
N
D
E
A
--
L
A
E
-
I
L
-
Q
A
N
-
D
N
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
63.83
31%
-67
- C7 -
2EIX
4
?
A:
[216-231]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
-
G
P
P
M
M
N
K
--
A
-
M
-
Q
G
------
H
L
E
-
T
L
-
G
Y
T
-
P
E
Q
W
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
63.25
15%
-38
* C7 *
1CQX
2
HMP_CUPNH
A:
[262-403]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVDAK
T
P
I
V
L
I
S
G
GVGLTP
M
V
S
M
L
K
V
A
L
QAPP
R
Q
V
V
F
V
H
G
A
RNSAVH
A
M
R
D
R
L
R
E
A
A
K
T
YEN
L
D
L
F
V
F
Y
DQPLPEDVQGRDYDYPGLVDVKQIEKSILLPD
A
D
Y
Y
I
C
-
G
P
I
P
F
M
R
--
M
-
Q
-
H
D
------
A
L
K
-
N
L
-
G
I
H
-
E
A
R
I
H
Y
E
VFGPDLFAE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
59.13
34%
-6
- C7 -
1B9P
-
A:
[1-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAVELR
S
P
-
G
I
S
R
F
R
R
--
K
-
I
A
K
R
------
S
I
K
-
T
L
-
E
H
K
R
E
N
A
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
57.78
26%
-43
- C7 -
4PKF
4
?
A:
[8-864]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
V
L
E
Y
KG
K
K
L
N
FTPEDPAEETIPADELHEHLQKPST
A
R
T
K
R
L
K
E
R
CRWK
H
A
-
S
A
G
E
F
I
E
--
K
S
V
-
T
A
------
G
I
E
-
R
M
-
R
Y
L
-
T
E
A
H
K
A
S
EGKP
E
A
I
R
R
A
L
G
L
A
N
V
L
N
K
S
T
L
V
L
Q
E
DEFIVGYHAEDPN
M
F
P
L
Y
PELS
H
M
A
V
Q
D
Y
L
R
SDYSPQP
A
D
E
A
A
A
I
N
E
Y
W
K
PHS
L
Q
S
K
C
QPYFD
P
A
D
L
G
R
M
Y
Q
VSSMEAPSFASG
Y
N
S
I
V
P
P
Y
E
T
V
L
E
DG
L
L
A
R
I
K
L
A
E
K
H
I
A
E
A
Q
A
D
M
S
TFPWNGTKGL
D
N
I
A
K
I
D
N
W
K
A
M
V
I
A
C
K
A
V
I
S
W
A
R
R
Q
G
R
L
C
K
I
V
A
E
NFETD
P
K
R
Q
A
E
L
L
E
I
A
D
I
C
Q
R
IPAEPCKG
L
K
D
A
M
Q
A
K
F
F
T
F
L
I
C
H
AIE
R
Y
A
S
G
YAQK
E
D
T
L
L
W
P
Y
Y
K
A
S
VVDKKFQPMS
H
M
D
A
V
E
L
V
E
M
E
R
L
K
I
S
E
HGAGKS
R
A
Y
R
E
I
F
PGSN
D
L
F
I
L
T
V
G
GTNAKGEDACN
D
M
T
D
A
I
L
E
A
A
K
R
IRTAEP
S
I
V
F
RYSKKNR
E
K
T
L
R
W
V
F
E
C
I
R
D
GLGYP
S
I
K
H
D
E
I
G
T
E
Q
M
K
E
Y
A
K
F
SLNGNGAT
D
E
E
A
H
NWVNVLC
M
S
P
G
I
H
G
RRKTQKTRSE
G
G
G
S
I
F
P
A
K
L
L
E
I
S
L
N
D
GYDWSYADMQLGPKTGDLSSLKS
F
E
D
V
W
E
A
F
R
K
Q
Y
Q
Y
A
I
N
L
C
I
S
T
K
D
V
S
R
Y
F
E
Q
R
FLQM
P
F
V
S
A
I
D
D
G
C
M
E
L
GMDACALSE
Q
P
N
G
W
H
N
P
I
T
T
I
V
A
A
N
S
L
V
A
I
K
K
LVFEEKKYT
L
E
Q
L
S
Q
A
L
K
A
N
WEGF
E
E
M
R
V
D
F
K
R
APKWGNDD
D
Y
A
D
G
I
I
T
R
F
Y
E
EI
I
G
G
E
M
R
K
ITNYSG
G
P
V
M
P
TGQAVG
L
Y
M
E
V
G
S
R
TGPTPDGRFGGEAADDGGISPYMGTDKKG
P
T
A
V
L
R
S
V
S
K
VQKNQK
G
N
L
L
N
Q
R
L
S
V
P
I
M
R
SKH
G
F
E
I
W
N
S
Y
I
K
T
W
H
D
L
NID
H
V
Q
F
N
VVS
T
D
E
M
R
A
A
Q
R
EPEKHHD
L
I
V
R
V
S
GYSARFVDIP
T
Y
G
Q
N
T
I
I
A
RQE
Q
D
F
S
A
S
D
L
E
F
L
NVEI
28
Fugue
56.85
15%
-64
- C7 -
1RKL
-
OST4_YEAST
A:
[1-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
-
S
D
E
Q
L
N
S
L
-
A
-
I
-
T
F
------
G
I
V
-
M
M
-
T
L
I
-
V
I
Y
H
A
V
D
S
T
M
S
P
KN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
56.82
28%
-96
- C7 -
3VO2
-
?
A:
[267-284]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
-
G
L
K
G
M
E
K
--
G
-
I
-
D
D
------
I
M
L
-
N
L
-
A
A
K
-
D
G
I
D
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
54.49
19%
-61
- C7 -
1CQX
1
HMP_CUPNH
A:
[367-382]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
C
-
G
P
I
P
F
M
R
--
M
-
Q
-
H
D
------
A
L
K
-
N
L
-
G
I
H
-
E
A
R
I
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
54.43
17%
-33
- C7 -
1FDR
-
FENR_ECOLI
A:
[211-228]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
-
G
N
P
Q
M
V
R
--
D
-
T
-
Q
Q
------
L
L
K
-
E
T
-
R
Q
M
-
T
K
H
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
54.12
36%
-85
- C1 -
1ZRX
-
A:
[8-18]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
L
V
K
--
K
-
V
-
K
H
------
T
I
S
-
E
T
-
A
H
V
-
A
K
D
T
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
52.40
13%
-74
- C7 -
1QFJ
-
FRE_ECOLI
A:
[199-213]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
-
G
R
F
E
M
A
K
--
I
-
A
-
R
D
------
L
F
C
-
S
E
-
R
N
A
-
R
E
D
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
50.32
19%
-48
- C7 -
2PIA
-
PDR_BURCE
A:
[198-213]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
C
-
G
P
Q
A
L
M
D
--
T
-
V
-
R
D
------
M
T
G
-
H
W
-
P
S
G
-
T
V
H
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
50.20
37%
-55
- C7 -
2R6H
-
?
A:
[260-278]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
-
G
P
G
P
M
A
N
--
A
-
V
-
K
G
------
M
L
E
-
N
L
-
G
V
P
-
R
N
M
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.21
44%
37
- C7 -
2EKM
1
?
A:
[20-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
Q
S
H
F
I
K
--
T
-
V
-
E
D
------
L
Y
E
-
T
L
-
A
S
S
-
S
P
H
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
43.43
39%
-6
- C7 -
1RLH
-
?
A:
[31-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
G
Y
S
H
F
I
K
--
T
-
V
-
E
D
------
L
N
E
-
I
I
-
R
T
H
-
V
P
G
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
43.24
34%
61
- C4 -
4H3W
-
?
A:
[38-350]
------------------------------------------------------------------------------------------------------------------------------------------------E
S
W
V
A
P
LGMGYVT
S
D
D
V
V
NVEVPS
I
R
E
V
DG
A
Y
V
M
I
Y
D
G
E
MIGSLRAASDVEI
A
S
E
D
I
T
TGDIDGLFDGDFVLALT
N
P
H
I
T
LSNVN
A
S
L
D
C
S
L
S
I
E
A
E
N
TSE
A
T
S
S
D
F
T
L
S
TVSP
N
I
W
I
G
PLDPTDAFFVNEL
P
G
I
V
Q
I
VPQI
H
L
S
L
S
A
DSQWTNAPADALSEL
R
Y
A
V
E
L
P
LTPAPE
F
S
A
V
S
V
E
R
IEDAFDEDF
V
D
Y
I
F
S
D
-
G
S
A
R
I
Y
G
--
E
-
V
-
T
N
EMPFDM
S
I
E
M
V
I
M
D
E
N
-
N
V
P
V
D
I
Q
F
P
A
QEVGQ
S
G
E
V
I
F
E
I
TEDMPMDAR
H
I
D
L
NLH
L
T
G
R
DQGEALGQTTFNLLEGGI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
42.40
44%
49
- C7 -
1WVQ
-
?
A:
[23-38]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
Q
A
H
F
I
K
--
T
-
V
-
E
D
------
L
Y
E
-
A
L
-
V
T
S
-
V
P
G
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
42.34
44%
52
- C7 -
1VGG
-
?
A:
[18-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
G
Q
A
H
F
I
K
--
T
-
V
-
E
D
------
L
H
E
-
A
L
-
V
T
A
-
V
P
G
I
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------