@TOME V2.3
(Nov 2016)

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3D Common Core:

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Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : gbs0109: (2015-11-28 )
MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST

Atome Classification :

(20 SA) .........10........20........30........40........50........60........70........80........90........100.......110.-----------------.-----------.--....120-----....--.--...130.--------------------------......140---.---------.------..------.----------------------.-----------------.-.---.---------150--.----.-------.-------.-------.-------.----..----.----160-.--...------.....170.......180---.......190.......200.......210-..-----....--.-----220.......230.......240--------.--.----......250....-.-.-.260...-..-..270---------------------.....-------------------------...280.......290.......300.......----310...-....320-...----....--330.........340-------.------......350....-.---..360........370.-------......380.......390.......400.......410.......420.......430--.-----..---......440.......450..--
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA-----------------N-----------K--GTVLYV------SGEE--S--AEQIKLR--------------------------SERLGDI-----D---------N------EF------Y----------------------L-----------------Y-A---E---------T----N----M-------Q-------S-------I-------R----SE----I----E---K--IKP------DFLIIDSIQTIMSPEVSS---VQGSVSQVREVTAELMQLAKTNNIATFIVG-HV-----TKEG--T-----LAGPRMLEHMVDTVLYFEGERH---------H--T----FRILRAVKNRFGS-T-N-EIGIFEM-QS-GGLV----------------------EVLNP-------------------------SQVFLEERLDGATGSAIVVTMEGTRPILAEVQA----LVTPTV-FGNAKRT-TTG----LDFN--R--VSLIMAVLEKRC-------G------LLLQNQDAYLKSA-G---GVK-LDEPAIDLAVAVA-------IASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQRINEASKLGFTKIYAPKNSLAGI----E-----IP---KGIDVIGVTTVSQVLKAVFST--
47 HHSearch 76.8418% -89 - C1 -3LDA RAD51_YEAST A:[156-396] -----------------------------------------------------------------ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ-----------------IPLDIGGG----E--GKCLYI------DTEG--TFRPVRLVSI--------------------------AQRFGLDPDDA-L---------N------NV------A----------------------Y-----------------A-R---A---------Y----N----A-------D-------HQLRLLDAA-------A----QM----M----S---E--SRF------SLIVVDSVMALYR-----GE-LSARQMHLAKFMRALQRLADQFGVAVVVTN-QV---------------------NIMAYSSTTRLGFKKGK----------G--C----QRLCKVVDSPCLP-E-A--ECVFAI-YE-DGVG----------------------DPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27 Fugue 76.8222% -88 - C1 -2CVH - RADB_THEKO A:[1-220] --------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTG--LL-----------------S-----------G--KKVAYVDTEGGFSPER--L--VQMAETR--------------------------GLNPEEA-----L---------S------RF------I----------------------L-----------------F-T---P---------S----D----F-------K-------E-------Q-------R----RV----I----G---S--LKKTVDSNFALVVVDSITAHYRAEENR----SGLIAELSRQLQVLLWIARKHNIPVIVIN-QVHFDSRTEMT--K-----PVAEQTLGYRCKDILRLDKLPK---------P--G----LRVAVLERHRFRP-E-G-LMAYFRI-TE-RGIE----------------------DVE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48 HHSearch 76.2219% -90 - C1 -2I1Q RADA_METVO A:[76-321] -----------------------------------------------------------------TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVA-----------Q--PKAVYI------DTEGTFR--PERIMQM--------------------------AEHAGIDGQTV-L---------D------NT------F----------------------V-----------------A-R---A---------Y----N----SDMQMLFAE-------K-------I-------E----DL----I----Q---EG-NNI------KLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN-QV-----SAK----AEQ--AIGGHIVGHAATFRFFVRKGK----------G--D----KRVAKLYDSPHLP-D---AEAIFRI-TE-KGIQ----------------------D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41 HHSearch 74.9919% -86 - C1 -2W0M ? A:[3-230] -------------------------------------------------------------------SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----------------RD----------G--DPCIYV------TTEE--S--RDSIIRQ--------------------------AKQFNWDFEEYIE---------K------KL------I----------------------I-----------------I-D---ALMDQWSLVNL----T----P-------E-------E-------L-------V----NK----VIEAKQ---KLGYGK------ARLVIDSVSALFLDKP----------AMARKISYYLKRVLNKWNFTIYATS-Q-----------------------GVEHVADGIIRFRRMIR---------NGEL----HRYILIEKMRQTD-H-DKHVWEIDI-VNGKGIV----------------------LKGRL-------------------------EE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38 HHSearch 72.9321% -72 * C1 *2CVH - RADB_THEKO A:[1-219] --------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLL-------------------S-----------G--KKVAYV------DTEGGFS--PERLVQM--------------------------AETRGLN-----PEEAL-----S------RF------I----------------------L-----------------F-T---P---------S----D----F-------K-------E-------QRRV----I----GS----L----KKTVD--SNF------ALVVVDSITAHYRAEEN----RSGLIAELSRQLQVLLWIARKHNIPVIVIN-QV-----HFDS--RTEMTKPVAEQTLGYRCKDILRLDKLPK---------P--G----LRVAVLERHRFRP-E-G-LMAYFRI-TE-RGIE----------------------DVE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40 HHSearch 72.7621% -88 - C1 -2DR3 Y284_PYRHO A:[3-237] -------------------------------------------------------------------RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-----------------KM----------G--EPGIYV------ALEE--H--PVQVRQN--------------------------MAQFGWD-----V---------K------PYEEKGMFA----------------------MVDAFTAGIGKEYEKYIVH-D---L---------T----D----I-------R-------E-------F-------I----EVLRQAI----R---D--INA------KRVVVDSVTTLYINKP----------AMARSIILQLKRVLAGTGCTSIFVS-QV-----S-----------GFG-PGVEHGVDGIIRLDLDEI---------DGEL----KRSLIVWKMRGTS-H-SMRRHPFDI-TD-KGII----------------------VYPDK-------------------------VLKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51 HHSearch 72.7018%-104 - C1 -1NLF REPJ_ECOLX A:[11-265] -------------------------------------------------------------------EAFAAAPPPLDYVLPN-MVAGTVGALVSPGGAGKSMLALQLAAQIA-----------------GGPDLLEVGELPT--GPVIYL------PAED--P--PTAIHHR--------------------------LHALGAH-----LSAEERQAVAD------GL------L----------------------I-----------------Q-PLIGS---------LPNI-M----A-------P-------E-------W-------F----DG----L----K---RAAEGR------RLMVLDTLRRFHIEEE-------NASGPMAQVIGRMEAIAADTGCSIVFLH-HA----------------------VLVDNIRWQSYLSSMTSAEAEEWGVDD--DQRRFFVRFGVSKANYGA-P-F-ADRWFRR-HD-GGVL----------------------KPAVL-------------------------ERQRKSKGVP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54 HHSearch 72.1219% -83 - C1 -1TF7 KAIC_SYNE7 A:[259-480] -----------------------------------------------------------------SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-----------------AN----------K--ERAILF------AYEE--S--RAQLLRN--------------------------AYSWGMD-----F---------EEMERQNLL------K----------------------I-----------------V-C---A---------YPESAG----L-------EDHLQ---I-------I-------K----SE----I----N---D--FKP------ARIAIDSLSALARGVS---------NNAFRQFVIGVTGYAKQEEITGLFTN-TS-----DQFMGAH-----SITDSHISTITDTIILLQYVEIRG-------E--M----SRAINVFKMRGSW-HDK-AIREFMI-SD-KGPD----------------------IKDSF-------------------------RNFERIISGSPTRI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 Fugue 71.8315% -68 - C1 -1TF7 KAIC_SYNE7 A:[14-497] --------------------------------------------------------------EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------------I-----------EFDEPGVFV------TFEE--T--PQDIIKN--------------------------ARSFGWD-----L---------A------KL------VDEGKLFILDASPDPEGQEVVGGF-----------------D-L---S---------A----L----I-------E-------R-------I-------N----YA----I----Q---K--YRA------RRVSIDSVTSV-----FQ---QYDASSVVRRELFRLVARLKQIGATTVMTTERI-----EEYG--P-----IARYGVEEFVSDNVVILRNVLE---------GERR----RRTLEILKLRGTSHM-K-GEYPFTI-TD-HGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMER-QNLLKIV-CAY----PESA--G--LEDHLQIIKSEI-------NDFKPARIAIDSLSALARGV-S---NNA-FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIR----E-----FMISDKGPDIKDSFRNFERIISGSPTRI
23 Fugue 70.5218% -78 - C1 -1CR2 PRIM_BPT7 A:[1-277] ----------------------------------------------------MRERIREHLSSEESVGLLFSGCTGINDKTLG-ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---------------M-----------G--KKVGLA------MLEE--S--VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-----F---------G------ND------T----------------------F-----------------H-L---Y---------D----SFEAET-------D-------R-------L-------L----AK----L----A---Y--MRSGLGC--DVIILDHISI---------------RKMIDNLMTKLKGFAKSTGVVLVVIC-HL-----K--------------SGALRQLSDTIIALERNNL---------V--L----VRILKCRFT--GD-T-G-IAGYMEYNKE-TGWL----------------------EPSSY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52 HHSearch 69.8021% -87 - C1 -2ZTS ? A:[8-245] -----------------------------------------------------------------PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA-----------------EEY---------G--EPGVFV------TLEE--R--ARDLRRE--------------------------MASFGWD-----F---------EKYEKEGKI------A----------------------I-----------------VD--------------F----N----V-------D-------N-------F-------LRYIYRV----V----K---A--INA------KRLVIDSIPSIALRL--------EEERKIREVLLKLNTILLEMGVTTILTT-EA-----P---G-K-----LSRYGIEEFIARGVIVLDLQEK---------NIEL----KRYVLIRKMRETR-H-SMKKYPFEI-GP-NGIV----------------------VYP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39 HHSearch 69.2119% -85 - C1 -1N0W RAD51_HUMAN A:[2-241] -----------------------------------------------------------------EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQ-----------------LPIDRGGG----E--GKAMYI------DTEGTFR--PERLLAV--------------------------AERYGLSGSDV-L---------D------NV------A----------------------Y-----------------A-R---A---------F----N----TDHQTQLLY-------Q-------A-------S----AM----M----V---E--SRY------ALLIVDSATALYR-----E--LSARQMHLARFLRMLLRLADEFGVAVVITN---------------------------AHASTTRLYLRKGR----------G--E----TRICKIYDSPCLP-E-A--EAMFAI-NA-DGVG----------------------DAKD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42 HHSearch 67.8820% -80 - C1 -2Z43 - RADA_SULSO A:[85-322] -----------------------------------------------------------------NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ-----------------LPPEKGGL----S--GKAVYI------DTEG--TFRWERIENM--------------------------AKALGLDIDNV-M---------N------NI------Y----------------------Y-----------------I-R---A---------I----N----T-------D-------H-------QIAIVDDLQ----EL----V----SK--D--PSI------KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN-QV----------------------------GIRIQLKKSR----------G--N----RRIARVVDAPHLP-E-G--EVVFAL-TE-EGIR----------------------DAE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43 HHSearch 66.6118% -85 - C1 -1V5W - DMC1_HUMAN A:[97-338] -----------------------------------------------------------------MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----------P-----------G--GKIIFI------DTENTFR--PDRLRDI--------------------------ADRFNVDHDAV-L---------D------NV------L----------------------Y-----------------A-R---A---------Y----T----S-------EHQMELLDY-------V-------A----AK----F----HEE-A--GIF------KLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTN-QM--------------------GHILAHASTTRISLRKGR----------G--E----LRIAKIYDSPEMP-E-N--EATFAI-TA-GGIG----------------------DAKE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 66.3726% -92 - C1 -1Z0G - LONB_ARCFU A:[444-600] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIIAEV--------TPSM----EGRVIATGRLQEIARE--A--VMNVSAIIKKYT-------G------RDISNMDVHIQFV-GTYEGVE-GDSASI--SIATA-------VISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAE-----HE---GKIEVIPVSRINEVLEHVL----
4 PsiBlast_PDB 64.1626% -88 - C1 -1Z0T - LONB_ARCFU A:[444-600] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIIAEV--------TPSM----EGRVIATGRLQEIARE--A--VMNVSAIIKKYT-------G------RDISNMDVHIQFV-GTYEGVE-GDSASI--SIATA-------VISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAE-----HE---GKIEVIPVSRINEVLEHVL----
2 PsiBlast_PDB 64.1226% -86 - C1 -1Z0E - LONB_ARCFU A:[444-600] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIIAEV--------TPSM----EGRVIATGRLQEIARE--A--VMNVSAIIKKYT-------G------RDISNMDVHIQFV-GTYEGVE-GDSASI--SIATA-------VISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAE-----HE---GKIEVIPVSRINEVLEHVL----
1 PsiBlast_PDB 63.9226% -85 - C1 -1Z0W A:[30-186] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIIAEV--------TPSM----EGRVIATGRLQEIARE--A--VMNVSAIIKKYT-------G------RDISNMDVHIQFV-GTYEGVE-GDSASI--SIATA-------VISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAE-----HE---GKIEVIPVSRINEVLEHVLED--
35 HHSearch 63.6618% -77 - C1 -2X36 - LONM_HUMAN A:[758-948] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVTPPGVVMGLAWTAMGGSTLFVET----SLRRPQD---GSLE-VTG----QLGEVMKESARIAYTFARAFLMQHAPAND------Y-LVTSHIHLHVPEG---ATP-KDGPSAGCTIVTA-------LLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDF----YDLAAFIT---EGLEVHFVEHYREIFDIAFP---
7 PsiBlast_PDB 62.6324% -79 - C1 -1Z0C - LONB_ARCFU A:[444-600] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIIAEV--------TPSM----EGRVIATGRLQEIARE--A--VMNVSAIIKKYT-------G------RDISNMDVHIQFV-G---TYEGVEGASASISIATA-------VISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAE-----HE---GKIEVIPVSRINEVLEHVL----