@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0136: (2015-11-28 )
MIPFTIEYIFVLIGAFLLSIILTPIIRVISLKVGAVDKPNARRINKVPMPSSGGLAIFLSFVVTTLFFMPMAASRHFIEVSYFHYILPVIIGGLVVTTTGFIDDIFELRPRYKMLGIIIAAVIIWKFTHFRFDSFKIPIGGPLLEFGPILTFFLTVLWIISITNAINLIDGLDGLVSGVSIISLATMAVVSYFFLPKIDFFLTLTIVILIASIVGFFPYNYHPAIIYLGDAGALFIGFMIGVLSLQGLKNSTAVAVITPVIILGVPILDTAVAIVRRKLSGKKISEADKMHLHHRLLSMGFTHRGAVLVVYGIAIIFSLIALLLNVSSRIGGIFLLLALLLAMEIFIEGLNIWGENRTPLFNLLKFIGNSDYRQSVIAKYSDKHQK
Atome Classification :
(16 SA)
-------------------------------------------.........10........20........30........40---...-.-.....50...--..--.----..60........70.......------.80----...--.....90---........100...---....------110-.----...-----------------.....120-------......--------------.130.---....--..140..------.....-150..--.-----....160-......--.170---...------....-.180.......190..--....------.200---------........210...--....220.......230--.......240-.......-..250.......260-...---------....270.......280--.........290.......300.......310.......320.----.....-.330-----.......-------..340.......350.......360...----.-...370.......380....-----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------MIP
F
T
I
E
Y
I
F
V
L
I
G
A
F
L
L
S
I
I
L
T
P
I
I
R
V
I
S
L
K
VGAVDKPN----ARR-I-NKVPMPSSG
G
--
L
A
--
I
----
F
L
S
F
V
V
T
T
L
F
F
M
PMAASR
H
F
I
------
E
V
S
----
Y
F
H
--
Y
I
L
P
V
II---G
G
L
V
V
TTT
G
F
I
D
D
I
---
F
EL
R
------
P
---
R
----
Y
K
M
-----------------
L
G
I
I
I
A
A
V
-------
I
I
W
K
F
T
--------------
H
F
R
FD---
S
F
KI--PIGG
P
L
L
------
E
F
G
P
I
-
L
T
F
F
L
--
T
-----
V
L
W
I
I
S
I
-
T
N
A
I
N
L
--
I
D
G
----
L
D
G
------
L
V
S
G
-
V
S
I
I
S
L
A
T
M
A
V
V
S
Y
F
F--LP
K
I
------
D
F
F
----------
L
T
L
T
I
V
I
L
I
A
S
I
V
G
--FFPYNYH
P
A
I
I
Y
LGD
A
G
--
A
L
F
I
G
F
M
I
---
G
V
L
S
L
QG-LKNS
T
A
V
A
V
I
T
P
V
I
I
-LGV---------
P
I
L
D
T
A
V
A
I
V
R
R
KLS----GKKIS
E
A
D
K
M
H
L
H
H
R
L
L
SMGFTHR
G
A
V
L
V
V
Y
G
I
A
I
I
F
S
L
I
A
L
L
----
L
N
V
S
S
-RI-------
G
G
I
F
L
L
L
-------
A
L
L
L
A
M
E
I
F
I
E
G
L
N
IWGENR
T
P
L
F
N
L
L
K
----
F
-IGN
S
D
Y
R
Q
S
V
I
A
K
YSDKHQK-----------------
12
Fugue
93.32
25%
-159
* C6 *
4J72
3
MRAY_AQUAE
A:
[20-363]
-------------------------------------------
F
A
F
N
V
L
K
Y
I
T
----------
F
R
S
F
T
A
V
L
I
A
F
F
L
T
L
V
L
S
P
S
----
F
I
N
-
R
-
L
K
K
Y
T
P
T
M
G
G
--
I
V
--
I
----
L
I
V
V
T
L
S
T
L
L
L
M
R
W
D
I
--------------------
K
--
Y
T
W
V
V
L
L
---
S
F
L
S
F
G
T
I
G
F
W
D
D
Y
---
V
K
L
K
NKKGIS
I
---
K
----
T
K
F
-----------------
L
L
Q
V
L
S
A
S
-------
L
I
S
V
L
I
--------------
Y
Y
W
A
D
IDT
I
L
Y
F
--
P
F
F
K
E
L
Y
------
V
D
L
G
V
-
L
Y
L
P
F
--
A
-----
V
F
V
I
V
G
S
-
A
N
A
V
N
L
--
T
D
G
----
L
D
G
------
L
A
I
G
-
P
A
M
T
T
A
T
A
L
G
V
V
A
Y
A
V
G
H
S
K
I
A
------
Q
Y
L
N
I
P
Y
V
P
YA
G
E
L
T
V
F
C
F
A
L
V
G
A
G
L
G
--
F
L
W
F
N
S
F
P
A
Q
M
F
M
G
D
V
G
--
S
L
S
I
G
A
S
L
---
A
T
V
A
L
L
--
T
K
S
E
F
I
F
A
V
A
A
G
V
F
V
-
F
E
T
---------
I
S
V
I
L
Q
I
I
Y
F
R
W
T
-
G
----
G
K
R
L
F
K
R
A
P
F
H
H
H
L
E
L
--
N
G
L
P
E
P
K
I
V
V
R
M
W
I
I
S
I
L
L
A
I
I
A
I
S
----
M
L
K
-------------------------------------------------------------------------------------------------
16
Fugue
84.61
18%
-162
* C5 *
3VWA
-
CEX1_YEAST
A:
[1-540]
PLHMSISNFQFP
Y
T
I
E
ETAITETAL
W
Q
C
F
D
G
T
R
K
ADSL
P
V
T
V
F
K
A
K
R
S
P
E
N
E
S
L
I
L
N
A
V
H
K
S
K
I
L
K
I
P
G
L
C
T
V
L
E
T
F
D
S
D
P
Q
S
T
F
I
V
T
E
R
-
V
-
V
P
F
P
W
D
N
L
G
S
--
L
S
Q
N
K
----
F
G
V
E
L
G
I
S
Q
L
L
A
T
L
G
F
L
K
N
F
V
LGTLSK
D
S
V
----
F
I
N
--
I
K
G
E
W
V
L
---
F
G
L
E
L
C
S
S
K
E
G
L
S
A
---
F
E
F
A
------
S
---
R
A
R
S
Y
Y
N
I
I
GSQLPCEDPNT
I
D
S
M
G
L
G
L
L
I
K
S
L
M
APSCLP
K
D
W
I
V
N
V
N
M
I
S
D
GKIT
I
E
N
F
R
K
R
L
E
---
N
T
E
T
--
W
R
S
N
P
L
I
------
N
F
Y
Q
E
-
L
R
E
L
H
IK
D
-----
P
Q
G
K
L
V
V
M
S
N
L
E
N
L
--
Y
L
E
SREI
F
R
N
------
L
T
P
G
M
I
E
N
F
I
I
P
E
L
C
E
I
I
K
L
L
M
-
T
Q
S
I
SSNASH
K
L
V
----------
P
F
L
A
I
V
L
D
L
T
S
E
T
N
--
T
F
P
V
G
F
N
D
L
I
T
Q
S
F
K
L
P
D
R
Q
V
R
F
L
L
L
I
---
Y
L
P
K
L
I
G
P
L
S
K
S
E
I
S
S
R
I
Y
P
H
F
I
-
Q
G
L
TDSD
A
T
L
R
L
Q
T
L
K
T
I
P
C
I
V
S
C
----------
L
T
E
R
Q
L
N
N
E
L
L
R
F
L
A
K
T
Q
V
D
S
D
V
E
I
R
T
W
T
V
I
I
I
S
K
I
S
T
I
L
STS
V
G
N
R
S
N
-
I
L
-------
A
T
A
F
T
K
S
L
K
DPQ
V
K
P
R
L
A
A
L
Y
G
L
E
K
S
I
E
L
F
D
V
N
T
I
A
N
-
K
I
L
T
----
V
-
I
A
P
G
L
L
D
K
S
P
I
V
R
G
R
A
K
I
L
F
E
E
Y
L
E
K
L
E
K
E
A
Q
L
IQTN
21
Fugue
83.69
17%
-142
- C5 -
4NZR
1
Y281_MYCGE
M:
[26-416]
--------------------------------------------
N
D
G
S
Y
Q
S
E
I
D
L
S
G
G
A
N
F
R
E
K
F
R
N
F
A
N
E
L
S
E
A
I
T
N
S
P
K
G
L
----
D
R
-----
P
V
P
K
T
E
I
S
G
--
L
I
--
K
TGDN
F
I
T
P
S
F
K
A
G
Y
Y
D
H
V
A
S
D
G
S
L
L
------
S
Y
Y
QSTE
Y
F
N
NR
V
L
M
P
I
L
Q
TTN
G
T
L
M
A
N
N
R
G
-
Y
D
D
V
---
F
R
Q
V
------
P
---
S
----
F
S
G
-----------------
W
S
N
T
-
K
A
T
-------
T
V
S
T
S
N
--------------
N
L
T
Y
D
---
K
W
T
Y
FA
A
K
G
S
P
L
Y
------
D
S
Y
P
N
-
H
F
F
E
D
--
V
-----
K
T
L
A
I
D
A
-
K
D
I
S
A
L
--
K
T
T
----
I
D
S
EKPTYL
I
I
R
G
-
L
S
G
N
G
S
Q
L
N
E
L
Q
L
P
E
S
--
V
K
K
V
------
S
L
Y
----------
G
D
Y
T
G
V
N
V
A
K
Q
I
-------
F
A
N
V
V
E
L
E
F
Y
S
T
S
K
--
A
N
S
F
G
F
---------------
N
P
L
V
L
G
S
K
T
N
V
I
Y
D
L
F
A
---------
S
K
P
F
T
H
I
D
L
T
Q
V
T
L
Q
----
N
S
D
N
S
A
I
D
A
N
K
L
K
Q
A
V
G
D
I
Y
N
Y
R
R
F
E
R
Q
F
Q
G
Y
F
A
G
G
Y
I
D
K
Y
L
V
----
K
N
V
N
T
N
K
D
-------
S
D
D
D
L
V
Y
-------
R
S
L
K
E
L
N
L
H
L
E
E
A
Y
R
E
G
D
N
T
Y
Y
R
V
N
E
N
Y
----
Y
-
P
G
A
S
I
Y
E
N
E
R
A
S
R
D
S
E
F
Q
N
E
ILKR-------------
20
Fugue
73.35
17%
-132
- C2 -
4QUV
1
?
A:
[23-427]
-----------------------------------F
S
W
L
V
L
M
I
A
L
P
P
L
V
Y
Y
L
W
I
C
V
T
Y
Y
Q
G
E
L
V
F
T
S
------------
D
A
A
A
----
W
R
R
-
F
W
S
H
V
A
P
P
T
W
H
A
--
A
G
--
L
----
Y
A
A
W
F
L
G
Q
A
A
L
Q
V
W
A
P
G
P
T
V
Q
G
M
KLP-
D
G
S
----
R
L
D
--
Y
R
M
N
G
I
F
---
S
F
L
F
T
L
A
V
V
F
G
L
V
T
---
M
G
W
L
------
D
ATV
L
----
Y
D
Q
-----------------
L
G
P
L
L
T
V
V
-------
N
I
F
T
F
V
--------------
F
A
G
F
L
---
Y
F
W
G
--
P
F
Y
D
Y
F
M
GTALNP
R
I
G
S
L
D
L
K
L
F
C
--
E
ARPG
M
I
F
W
L
L
M
N
-
L
S
M
A
A
K
--
Q
Y
E
----
L
H
G
------
T
V
T
-------
V
P
M
L
L
V
V
G
F
Q
S
--
F
Y
L
I
------
D
Y
F
----------
I
H
E
E
A
V
L
T
T
W
D
I
K
H
EK
F
G
W
M
L
C
W
G
D
L
V
W
L
P
F
T
Y
--
T
L
Q
A
Q
Y
L
V
HHT
H
D
L
P
V
W
G
-
I
I
A
I
V
A
L
N
L
A
G
Y
A
I
F
-
R
G
A
---------
N
I
Q
K
H
H
F
R
R
D
P
N
R
I
V
----
W
G
K
P
A
K
Y
I
K
T
K
Q
G
S
L
L
L
T
S
G
W
W
G
I
A
R
H
M
N
Y
F
G
D
L
M
I
A
L
S
W
C
L
P
----
A
A
F
G
S
-
P
-----------------------
I
P
Y
F
H
I
V
Y
F
T
I
L
L
L
H
R
E
K
R
D
D
A
M
C
L
A
K
----
Y
G
E
D
W
L
Q
Y
R
K
K
V
P
W
R
I
V
P
K
I
Y
------------------
15
Fugue
72.68
12%
-106
- C6 -
4L6Y
-
PRC1_HUMAN
A:
[6-454]
------R
R
S
E
V
L
A
E
E
S
I
V
C
L
Q
K
A
L
N
H
L
R
E
I
W
E
L
I
GIP
E
D
Q
R
L
Q
R
T
E
V
V
K
K
H
I
K
E
L
L
D
M
M
I
A
E
E
E
S
L
K
E
R
L
I
K
S
I
S
V
C
Q
K
E
L
N
T
----
L
C
S
E
L
-
H
V
E
P
F
Q
E
E
G
E
TT
I
L
--
Q
----
L
E
K
D
L
R
T
Q
V
E
L
M
R
K
Q
K
K
E
R
K
Q
------
E
L
K
----
L
L
Q
--
E
Q
D
Q
E
L
C
---
E
I
L
C
M
P
H
Y
D
I
D
S
A
S
VPS
L
E
E
L
------
N
---
Q
----
F
R
Q
-----------------
H
V
T
T
L
R
E
T
-------
K
A
S
R
R
E
--------------
E
F
V
S
I
---
K
R
Q
I
--
I
L
C
M
E
E
L
------
D
H
T
P
D
-
T
S
F
E
R
--
D
-----
V
V
C
E
D
E
D
-
A
F
C
L
S
L
E
N
I
A
T
----
L
Q
K
------
L
L
R
Q
-
L
E
M
Q
K
S
Q
N
E
A
V
C
E
G
L
R
--
T
Q
I
R
------
E
L
W
----------
D
R
L
Q
I
P
-----------
E
E
E
R
E
A
V
A
T
I
M
S
G
S
K
A
--
K
V
R
K
A
L
Q
L
---
E
V
D
R
L
E
E
-
L
K
M
Q
N
M
K
K
V
I
E
A
I
R
V
-
E
L
V
---------
Q
Y
W
D
Q
C
F
Y
S
Q
E
Q
R
Q
A
FAPF
C
A
E
Y
T
E
S
L
L
Q
L
H
D
A
E
I
V
R
L
K
N
Y
Y
E
V
H
K
E
L
F
E
G
V
Q
K
W
E
E
T
W
R
L
F
----
L
E
F
E
R
-
K
A
S
DPNRRG
G
N
L
L
K
E
E
-------
K
Q
R
A
K
L
Q
K
M
L
P
K
L
E
E
E
L
K
A
R
I
E
L
W
E
Q
E
H
SK
A
-
F
-
M
V
N
G
Q
K
F
M
E
Y
V
A
E
Q
W
E
M
H
R
L
E
K
E
R
A
K
Q
E
R--------
1
PsiBlast_PDB
54.75
30%
-45
- C6 -
3J9P
-
D:
[1266-1335]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
F
I
V
M
L
E
V
I
L
K
----
T
L
L
R
S
-
T
V
-------
V
F
I
F
L
L
L
-------
A
F
G
L
S
F
Y
I
L
---
L
N
L
Q
D
P
F
S
S
P
L
L
S
I
I
Q
TFSM
M
-
L
G
D
I
N
Y
R
E
S
F
L
E
P
Y
-----------------------
3
HHSearch
43.59
10%
-68
- C6 -
3ZE3
4
KDGL_ECOLI
A:
[34-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
I
N
E
A
A
F
R
Q
E
G
V
A
V
L
L
C
V
V
I
A
A
W
----
L
D
V
D
A
V
T
R
-------
V
L
L
I
S
S
V
-------
M
L
V
M
I
V
E
L
L
N
-------
S
A
I
E
A
V
V
D
R
I
G
----
S
---
E
Y
H
E
L
S
G
R
A
K
D
L
G
S
A
A
V
L
-----------------
9
HHSearch
33.79
19%
220
- C6 -
2D9S
-
CBL_MOUSE
A:
[3-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
S
G
Q
L
S
S
E
I
E
R
L
M
S
Q
G
Y
S
Y
Q
D
I
Q
K
A
L
V
I
A
H
N
N
I
E
M
A
K
N
I
----
L
R
E
F
S
-
G
P
-------
S
S
G
----------------------------------------------------------------------------------
17
Fugue
33.61
15%
190
- C6 -
1A93
2
A:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
G
V
Q
A
E
E
Q
K
L
I
S
----
E
E
D
L
L
R
K
R
R
E
Q
L
K
H
K
L
E
Q
L
--------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
31.89
21%
310
- C3 -
2LS4
-
A:
[5-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
I
A
V
A
A
G
A
G
T
G
--
Y
F
L
F
S
W
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.65
44%
906
* C4 *
2VZN
-
VA3_SOLIN
A:
[203-218]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
G
A
P
I
Y
E
I
K
K
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
31.41
25%
338
- C6 -
2JZI
-
B:
[1-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
K
E
V
I
----
R
N
K
I
R
A
I
G
K
M
A
R
V
F
S
V
L
R
---------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
31.28
32%
656
- C4 -
3U43
-
IMM2_ECOLX
A:
[74-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
R
A
A
N
----
G
K
S
G
F
K
Q
G
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.51
22%
403
- C4 -
3WW3
1
?
A:
[174-196]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
S
Y
V
R
L
R
A
----
G
D
P
K
F
V
M
H
R
K
H
L
H
A
F
R
C
P
A
D
S
P
V
P
L
V
V
R
E
V
S
T
Y
S
H
E
P
A
P
L
P
Q
W
----
R
G
L
H
D
-
N
T
-------
F
V
A
E
A
A
N
-------
S
G
R
L
A
T
A
I
A
--------------------------------------------------------------
18
Fugue
30.26
17%
173
- C6 -
1JEK
2
A:
[1-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
L
A
N
A
T
A
-
A
Q
Q
---------
E
V
L
E
A
S
Y
A
M
V
Q
H
I
A
K
----
G
I
R
I
L
E
A
R
V
A
R
V
E
A
-------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
1.79
40%
1713
- C1 -
2HZS
-
MED8_YEAST
I:
[17-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
G
E
K
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------