@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06839: (2016-06-10 )
MPIKKKVMMCLAVTLVFGSMSFPTLTNSGGFKESTDRNTTYIDHSPYKLSDQKKALS
Atome Classification :
(19 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.......10...----...--..20........30.-----....-----...40.....-...50......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MP-
I
K
K
K
V
M
M
C
L
A
V
T
----
L
V
F--GSMSFPTLTNSGGFK-----ESTD-----RN
T
T
Y
IDHSP-YKLS
D
Q
K
KALS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
55.23
10%
-97
- C3 -
4YHB
5
?
A:
[7-267]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
R
T
V
E
M
Y
P
L
K
S
R
L
L
E
V
VNVRRITPR
M
V
R
V
D
L
G
G
SDIAGLRS
D
N
-
F
A
D
H
V
K
L
W
F
P
-
N
----
P
E
T
--
G
E
H
V
L
P
V
V
E
-
D
D
R
C
L
-----
N
F
R
A
-----
P
G
V
I
Y
R
D
Y
T
V
-
R
R
F
D
A
K
A
R
L
L
T
I
D
F
V
V
H
DNG
P
G
G
R
W
A
A
T
AQPG
D
R
L
G
V
L
G
PR
G
T
V
Y
Y
P
E
AD
H
Y
V
L
L
A
D
ETA
L
P
A
A
A
R
R
I
E
E
LPRD
A
S
V
T
A
F
F
E
V
ADAAE
E
Q
E
L
DAPEG
A
E
I
T
W
L
H
RNGAAPGTTD
L
L
L
R
A
L
E
Q
TEFPK
G
R
V
F
V
W
A
G
G
EADAL
K
P
I
R
R
L
L
K
E
R
GLVRGRD
F
E
V
D
G
YWRRGVSNLDHHA-----------------------------------------------------------------------------
21
Fugue
54.51
33%
54
* C2 *
3W36
1
?
A:
[58-527]
---------------------------------------------------------------------------------------------IEFDLDKDN
Y
I
K
W
A
QPTDENAGQSPTLAILGPMDVTV
F
L
W
I
N
R
V
V
W
L
A
A
F
D
A
L
A
PYHE
T
A
V
G
VYSQIPRRPSSESATN
R
N
L
N
I
A
A
L
H
A
Q
H
G
V
W
K
R
VLPQQ
V
D
Q
L
R
E
L
M
T
A
L
GLDPSDETENLSS
P
V
G
I
G
N
V
A
A
K
N
A
F
N
A
L
KNDGMNFLGYEGRKYNPRPWADYTGYEPVNTAFKVNNPS
R
W
Q
P
Q
L
Q
A
HNARRAGG
G
P
G
D
L
G
I
Y
V
T
Q
H
FVTPQTARTKAHIFRDPSR
F
R
-
I
P
R
P
--------------------
E
F
S
D
H
T
N
T
R
A
Y
K
-----
R
S
V
D
-----
E
----
I
I
D
A
S
-
A
N
L
N
D
E
R
K
A
L
A
E
I
M
E
N
KLWG
I
G
H
S
S
I
V
I
A
N
K
Y
D
QNNEMG
V
H
G
W
C
H
W
M
L
A
H
V
L
A
T
F
E
P
L
I
A
A
W
H
H
K
T
R
F
DAVR
P
V
T
A
I
R
H
V
YGN
R
K
I
R
AWGGVGMGTVDIRASEWSSYLPVGDHPEYPS
G
S
T
S
L
C
S
A
T
S
Q
A
A
R
R
Y
F
DSDELD
W
T
I
N
Y
P
A
GSTVVEPGITPG
K
D
L
S
I
H
I
PT
W
T
D
F
T
R
T
C
A
T
S
R
V
W
G
GVHF
Q
T
T
V
D
R
T
I
D
F
G
E
Q
F
G
D
L
A
H
E
F
V
Q
R
H
V
K
G-------------------------------------
15
Fugue
52.16
19%
-83
- C2 -
4CGY
1
TOP3A_HUMAN
A:
[22-640]
FS
R
A
A
M
E
M
A
L
RGVR
K
V
L
C
V
A
EK
N
D
A
A
K
G
I
A
D
L
L
S
N
GR
M
R
R
R
E
G
LSKF
N
K
I
Y
E
F
D
Y
H
L
YG
Q
N
V
T
M
V
M
T
S
V
SGHL
L
A
H
D
F
Q
MQFRKWQSCNPLVLFE
A
E
I
E
K
Y
C
P
ENF
V
D
I
K
K
T
L
E
R
E
T
R
Q
CQ
A
L
V
I
WTDCD
R
E
G
E
N
I
G
F
E
I
I
H
V
C
K
A
V
KPN
L
Q
V
L
R
A
R
F
SEIT
P
H
A
V
R
T
A
C
E
N
LTEPD
Q
R
V
S
D
A
V
D
V
R
Q
E
L
D
L
R
I
G
A
A
F
T
R
F
Q
T
L
R
L
Q
R
I
F
PEVLAEQLISYG
S
C
Q
F
P
T
L
G
F
V
V
E
R
F
K
A
I
Q
A
F
V
P
E
I
F
H
R
I
K
V
T
H
D
H
KD
G
I
V
E
F
N
W
KRHRLFN
H
T
A
C
L
V
L
Y
Q
L
C
V
E
DP
M
A
T
V
VEV
R
S
K
P
K
S
K
W
R
P
QALD
T
V
E
L
E
K
L
A
S
R
K
L
R
-
I
N
A
K
E
T
M
R
I
A
E
K
----
L
Y
T
Q
-
G
Y
I
S
Y
P
R
-
T
E
T
N
I
F
P
-----
R
D
L
N
-----
L
T
V
L
V
E
Q
Q
T
P
D
P
R
W
G
A
F
A
Q
S
I
L
E
R
GGPTPRNGNKSDQAHPPIHPTKYTNNLQG
D
E
Q
R
L
Y
E
F
I
V
R
H
F
L
A
C
C
S
Q
D
A
Q
G
Q
E
T
T
V
E
I
D
I
AQ
E
R
F
V
A
H
G
L
M
I
LAR
N
Y
L
D
V
Y
PY
D
H
W
S
D
KILPVYEQG
S
H
F
Q
P
STVEM
V
D
G
E
T
S
P
P
KLLT
E
A
D
L
I
A
L
M
E
K
H
GIGTDAT
H
A
E
H
I
E
T
I
K
A
R
MY
V
G
L
T
PDK
R
F
L
P
G
H
L
G
M
G
L
V
E
G
Y
D
S
MGYEMSKP
D
L
R
A
E
L
E
A
D
L
K
L
I
C
D
GKKD
K
F
V
V
L
R
Q
Q
V
Q
K
Y
K
Q
V
F
I
E
A
V
A
K
A
K
K
L
D
E
A
L
A
Q
Y
FGNGT
2
PsiBlast_PDB
48.55
50%
-121
- C5 -
1MDW
-
CAN2_RAT
A:
[21-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
A
G
----
A
L
F
--
Q
D
P
S
F
P
A
L
P
S
S
L
G
F
K
-----
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
46.82
13%
-133
- C2 -
1H4L
-
CD5R1_HUMAN
D:
[147-293]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSD
H
E
-
L
Q
A
V
L
L
T
C
L
Y
L
S
----
Y
S
Y
MG
N
E
I
S
Y
P
L
----
K
P
F
L
-----
V
E
S
C
-----
K
E
A
F
W
D
R
C
L
S
-
V
I
N
L
M
S
S
K
M
L
Q
INADPHYFTQVFSDLKNES-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.41
50%
-88
- C5 -
1DF0
-
CAN2_RAT
A:
[39-137]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
A
G
----
A
L
F
--
Q
D
P
S
F
P
A
L
P
S
S
L
G
F
K
-----
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
44.19
50%
-108
* C5 *
3BOW
-
CAN2_RAT
A:
[39-64]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
A
G
----
A
L
F
--
Q
D
P
S
F
P
A
L
P
S
S
L
G
F
K
-----
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.41
50%
-104
- C5 -
3DF0
-
CAN2_RAT
A:
[39-64]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
A
G
----
A
L
F
--
Q
D
P
S
F
P
A
L
P
S
S
L
G
F
K
-----
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.31
50%
-100
- C5 -
1U5I
-
CAN2_RAT
A:
[39-136]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
A
G
----
A
L
F
--
Q
D
P
S
F
P
A
L
P
S
S
L
G
F
K
-----
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
41.97
13%
-107
* C3 *
2VGA
-
A41_VACCW
A:
[42-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
V
S
N
--
G
G
L
N
I
S
V
D
L
L
N
C
F
L
N
FH
T
V
G
V
Y
T
N
-----
R
D
T
V
Y
A
K
F
A
S
-
L
D
P
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
41.58
10%
-42
* C4 *
2JTV
-
?
A:
[1-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
-
T
A
D
D
F
K
L
I
R
D
I
H
----
S
T
G
--
G
R
R
Q
V
F
G
S
R
E
Q
K
P
F
E
-----
D
L
V
D
L
GW
L
K
R
S
S
V
D
S
R
A
T
H
-
Y
Q
I
T
E
R
G
T
S
A
A
L
RS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
37.69
10%
-50
- C- -
4KE2
-
ANPM_PSEAM
A:
[0-195]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNID
P
A
A
R
A
A
A
A
A
A
A
S
K
A
A
V
T
A
A
D
A
A
A
A
A
A
T
I
A
A
S
A
A
S
V
A
A
A
T
A
A
D
D
A
A
A
S
I
A
T
I
N
A
A
S
A
A
A
K
S
I
A
A
A
A
A
M
A
A
K
D
-
T
A
A
A
A
A
S
A
A
A
A
A
----
V
A
S
--
A
A
K
A
L
E
T
I
N
V
K
A
A
Y
A
-----
A
A
T
T
-----
A
N
T
A
A
A
A
A
A
A
-
T
A
T
T
A
A
A
A
A
A
A
K
A
T
I
D
N
A
A
A
A
K
A
A
A
V
A
T
A
V
S
D
A
A
A
T
A
A
T
A
A
A
V
A
A
A
T
L
E
A
A
A
A
K
A
A
A
T
A
V
S
A
A
A
A
A
A
A
A
A
I
A
F
A
A
AP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
27.18
14%
-258
- C2 -
2HI2
-
FMM1_NEIGO
A:
[6-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
I
V
I
A
I
V
----
G
I
L
--
A
A
V
A
L
P
A
Y
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
26.85
10%
-27
- C4 -
1JXC
-
DF195_ARATH
A:
[1-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
E
I
E
A
Q
G
N
E
C
L
K
E
Y
----
G
G
D
--
V
G
F
G
F
C
A
P
R
I
F
P
T
I
C
-----
Y
T
R
C
-----
R
E
N
K
G
A
K
G
G
R
-
C
R
W
G
Q
G
S
N
V
K
C
L
C
D
FCGDTPQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
26.77
30%
43
- C1 -
2X5X
3
?
A:
[287-296]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
A
D
G
M
P
-
Y
N
A
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.09
19%
-165
- C2 -
2M8R
-
STX1A_RAT
A:
[263-283]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
K
I
M
I
I
I
C
C
----
V
I
L
--
G
I
I
I
A
S
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
23.47
10%
-258
- C2 -
2M7G
-
?
A:
[6-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
V
V
A
I
I
----
G
I
L
--
A
A
I
A
I
P
Q
F
S
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
23.33
19%
-174
- C2 -
1OQW
-
FMPA_PSEAI
A:
[6-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
I
V
V
A
I
I
----
G
I
L
--
A
A
I
A
I
P
Q
Y
Q
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
22.95
14%
91
- C2 -
1IC2
-
TPM1_CHICK
A:
[1-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
-
A
I
K
K
K
M
Q
M
L
K
L
D
K
E
N
A
L
D
R
--
A
E
Q
A
E
A
D
K
K
A
A
E
E
R
S
-----
K
Q
L
E
-----
D
E
L
V
A
L
Q
K
K
L
-
K
G
T
E
D
E
L
D
K
Y
S
E
S
L
K
D
A
Q
E
K
L
E
L
A
D
K
KAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------