@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20090: (2016-07-02 )
MSQSNYRPSVPRWVGDILELDKKRRQNQYRGSLTSGQEKKDWDEWKRRYSRKLKYARLNGWTIEEE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......---------..10..-......20........30.------.......40..------------......50........60.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSQSNYR---------PSV
P
R
W
-
V
G
D
I
L
E
L
D
K
K
R
R
Q
N
Q
YRGS------LTSGQEKK
D
W
D
------------
E
W
K
R
R
Y
S
RKL
K
Y
A
RLN
G
W
TIEEE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
71.53
22%
161
- C2 -
1DD3
-
RL7_THEMA
A:
[58-128]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
D
V
V
L
K
S
F
G
Q
N
K
---------
I
Q
V
I
K
V
-
V
R
E
I
T
G
L
G
L
K
E
A
K
D
L
V
E
K
A
GSPDAV
I
K
S
G
V
S
K
E
E
A
E
------------
E
I
K
K
K
L
E
E
A
-------
G
A
E
V
E
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
62.87
23%
177
- C4 -
2W75
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.00
23%
171
- C4 -
2O5P
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
61.80
23%
174
* C4 *
2W78
-
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.57
23%
181
- C4 -
2W6U
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
61.57
23%
163
- C4 -
2W6T
-
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
60.71
22%
84
- C2 -
4Q0C
-
BVGS_BORPE
A:
[33-545]
S
Q
E
L
T
LVGKA
A
V
P
D
V
EVALDGD
D
W
R
W
L
A
R
K
R
V
L
T
L
G
V
Y
A
PDIPPF
D
V
T
Y
GE
R
Y
E
G
L
T
A
D
Y
M
A
I
I
A
H
N
L
GMQ
A
K
V
L
R
Y
PT
R
E
Q
A
L
S
A
L
E
S
GQID
L
I
G
TVN
G
T
D
G
R
Q
QS
L
R
L
S
VPY
A
A
D
H
P
V
I
V
M
P
IGARHVPASNLAG
Q
R
L
A
V
DINYLP
K
E
T
L
A
R
A
YPQ
A
T
L
H
Y
F
PS
S
E
Q
A
L
A
A
V
A
Y
GQAD
V
F
I
G
D
A
L
T
T
S
H
L
V
S
Q
SYFND
V
R
V
V
A
PAH
I
A
T
G
G
E
S
F
G
V
RADN
T
R
L
L
R
V
V
N
A
V
L
E
A
I
P
P
S
E
H
R
---------
S
L
I
Y
R
W
G
L
G
S
S
I
S
L
D
F
A
H
P
A
Y
S
-----------------
A
R
E
Q
------------
Q
W
M
A
D
H
P
-
V
V
K
V
A
V
L
N
L
F
A
P
F
T
L
F
R
TDE
Q
F
G
G
I
S
A
A
V
L
Q
L
L
Q
L
R
TG
L
D
F
E
I
I
G
V
DT
V
E
E
L
I
A
K
L
R
S
GEADMAGALFVNSARESF
L
S
F
S
RPY
V
R
N
G
M
V
I
V
T
R
QDPDAPVDADHLDG
R
T
V
A
L
V
RNS
A
A
I
P
L
L
Q
R
R
Y
PQ
A
K
V
V
T
A
DN
P
S
E
A
M
L
M
V
A
N
GQAD
A
V
V
Q
T
Q
I
S
A
S
Y
Y
V
N
R
YFAGKLRIASALDL
P
P
A
E
I
A
L
A
T
TRGQ
T
E
L
M
S
I
L
N
K
A
L
Y
S
IS
N
D
E
L
A
S
I
I
S
R
W
R
G
S
D
G
D
P
R
T
W
Y
A
Y
R
N
E
I
Y
L
E
1
PsiBlast_PDB
60.65
23%
165
- C4 -
1XKH
1
FPVA_PSEAE
A:
[229-283]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.61
23%
171
- C4 -
2W16
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
60.25
23%
166
- C4 -
2W77
2
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
60.12
23%
170
- C4 -
2W76
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.90
23%
158
- C4 -
2IAH
1
FPVA_PSEAE
A:
[314-368]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
S
G
W
-
S
G
S
F
P
L
F
D
S
Q
G
N
R
N
D
V
S
R
S
------
F
N
N
G
A
K
W
S
S
W
E
------------
Q
Y
T
R
T
V
F
A
N
L
E
H
N
F
A
N
G
W
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
55.09
35%
88
- C2 -
4ARE
1
?
A:
[629-661]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
G
E
------
T
S
K
G
-
E
F
K
D
W
D
------------
E
M
S
K
K
L
D
G
T
L
E
S
L
A
K
N
S
W
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
53.45
35%
81
- C2 -
2Y50
1
?
A:
[629-661]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
G
E
------
T
S
K
G
-
E
F
K
D
W
D
------------
E
M
S
K
K
L
D
G
T
L
E
S
L
A
K
N
S
W
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
52.75
35%
98
- C2 -
2Y6I
1
?
A:
[629-661]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
G
E
------
T
S
K
G
-
E
F
K
D
W
D
------------
E
M
S
K
K
L
D
G
T
L
E
S
L
A
K
N
S
W
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.77
19%
132
- C2 -
2MN4
-
?
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
P
E
Q
R
E
F
L
---------
P
E
I
L
A
E
-
I
I
A
N
L
D
P
T
K
I
L
E
E
L
L
R
R
G
L
------
L
T
P
A
E
L
Q
E
V
L
D
LKT
P
E
E
Q
A
K
K
L
I
D
F
I
L
K
L
S
P
A
D
V
Q
A
R
I
N
V
L
R
A
H
G
Y
Q
A
L
A
D
K
L
N
K
Y
L
T
LE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
49.94
35%
93
- C2 -
2Y3U
1
?
A:
[629-661]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
G
E
------
T
S
K
G
-
E
F
K
D
W
D
------------
E
M
S
K
K
L
D
G
T
L
E
S
L
A
K
N
S
W
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
48.16
12%
-23
- C2 -
3FXD
-
?
B:
[29-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
D
A
T
L
G
---------
S
V
Y
S
E
I
-
I
S
P
V
K
D
C
I
L
T
V
A
K
A
V
S
F
N
P
--------
G
G
K
D
N
T
D
A
V
------------
E
V
L
T
E
L
N
T
K
V
E
R
A
A
L
N
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
47.91
15%
140
- C2 -
1U97
-
COX17_YEAST
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
T
D
K
K
QEQENHAEC
E
D
K
P
K
P
-
C
C
V
C
K
P
E
K
E
E
R
D
T
C
I
L
F
----------
N
G
Q
D
S
E
K
C
K
------------
E
F
I
E
K
Y
K
E
C
M
K
G
Y
---
G
F
E
V
P
S
A
N------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
47.63
25%
60
- C2 -
2KDR
-
?
X:
[1-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
A
A
A
R
V
T
A
I
L
S
S
------
L
T
V
T
Q
L
L
R
R
L
H
------------
Q
W
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------