@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20928: (2016-07-02 )
MEEKYETNGYDTSIVYDYKEYPDVKYGRCDNCDYTLFKSSVKSGIFLRECRRCGMKKSI
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20..-......30.....-.-..---40..-.------......50........---------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEKYETNGYD
T
S
I
V
Y
DYKEYPD-VKYGRCDNC
D
Y
T
L
-
F
-
K
S
---
S
-
V
K-S------
G
I
F
L
R
E
C
R
RCGMKKSI---------------------------------------
2
PsiBlast_PDB
77.52
33%
-243
- C9 -
3BH6
1
XRP2_HUMAN
B:
[74-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
-
V
T
I
D
D
C
T
N
C
--
I
I
-
F
-
L
G
---
P
-
V
K
-
G
------
S
V
F
F
R
N
C
R
D
C
---------------------------------------------
3
PsiBlast_PDB
73.13
33%
-232
- C9 -
3BH7
1
XRP2_HUMAN
B:
[74-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
-
V
T
I
D
D
C
T
N
C
--
I
I
-
F
-
L
G
---
P
-
V
K
-
G
------
S
V
F
F
R
N
C
R
D
C
---------------------------------------------
1
PsiBlast_PDB
72.85
33%
-238
* C9 *
2BX6
-
XRP2_HUMAN
A:
[72-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
-
V
T
I
D
D
C
T
N
C
--
I
I
-
F
-
L
G
---
P
-
V
K
-
G
------
S
V
F
F
R
N
C
R
D
C
---------------------------------------------
28
Fugue
63.96
24%
48
* C7 *
5A1F
14
KDM5B_HUMAN
A:
[1-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------SM
F
L
P
P
P
E
C
P
V
F
E
P
S
WEEFAD
P
F
A
F
I
H
K
I
R
P
I
A
E
Q
T
G
I
C
K
V
R
P
PPDWQP
P
F
A
C
D
VDK
L
H
F
T
P
R
I
Q
R
L
N
E
L
E
A
Q
T
R
VRDYT
L
R
T
F
G
E
M
A
D
A
F
K
S
D
Y
F
NMPVHMVP
T
E
L
V
E
K
E
F
W
R
L
V
S
TIEED
V
T
V
E
Y
G
A
D
I
A
SKEFGSG
F
P
V
R
DS
P
E
E
E
E
Y
L
D
SGWNLNNMPVMEQSVLAHITADICGMK
L
P
W
L
Y
V
G
M
CFSSF
C
W
H
I
E
DHW
S
Y
S
I
N
Y
L
HW
G
E
P
K
T
W
Y
G
V
P
GYA
A
E
Q
L
E
N
V
M
K
K
L
APELFVSQPDLL
H
Q
L
V
T
I
M
N
P
N
T
L
M
T
H
EV
P
V
Y
R
T
N
Q
C
AG
E
F
V
I
T
F
P
R
A
Y
H
S
G
F
N
Q
G
F
N
F
A
E
A
V
N
F
C
T
VDW
L
P
L
G
R
Q
C
V
E
H
Y
R
L
L
HRYCVFS
H
D
E
M
I
C
K
M
A
S
K
ADVLD
V
V
V
A
S
T
V
Q
K
D
M
A
I
M
I
E
D
E
K
A
L
R
E
T
V
R
K
L
G
V
I
D
S
E
R
M
D
F
E
L
L
P
D
-
D
E
-
R
Q
C
V
K
C
K
T
T
C
-
F
-
M
S
---
A
-
I
S
-
C
------
S
--------
C
K
P
G
L
L
V
C
LHHVKELCSCPPYKYKLRYRYT
L
D
D
L
Y
P
M
M
N
A
L
K
L
R
A
E
5
HHSearch
50.85
21%
-145
- C4 -
1PFT
1
TF2B_PYRFU
A:
[5-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
V
C
P
A
C
E
S
A
E
-
L
-
I
Y
---
D
-
P
E
-
R
------
G
E
I
--
V
C
A
K
C
G
Y
-------------------------------------------
25
Fugue
49.10
25%
-53
- C6 -
5AF6
1
ZRAN1_HUMAN
F:
[7-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
K
W
A
C
E
Y
C
T
Y
E
N
-
W
-
P
S
---
A
-
I
K
--------------
C
T
M
C
R
A
Q
R
P
----------------------------------------
23
HHSearch
47.47
25%
0
- C- -
1VQ8
-
RL37A_HALMA
Z:
[23-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
N
E
D
H
A
C
P
N
C
G
E
D
R
-
V
-
D
R
---
Q
-
G
--
T
------
G
I
--
W
Q
C
S
Y
C
D
Y
K
------------------------------------------
13
HHSearch
47.31
31%
-124
- C6 -
5FJ8
1
RPC10_YEAST
I:
[4-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
P
S
C
N
N
M
L
-
L
-
I
T
---
S
-
G
D
-
S
------
G
V
Y
T
L
A
C
R
S
C
P
Y
E
------------------------------------------
14
HHSearch
46.73
31%
-112
- C6 -
2LK0
1
A:
[7-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
W
L
C
N
K
C
C
L
N
N
-
F
-
R
K
---
R
-
L
--------------
K
C
F
R
C
G
A
D
K
F
----------------------------------------
30
Fugue
46.61
21%
85
* C6 *
2GAI
-
TOP1_THEMA
A:
[7-601]
K
Y
I
V
V
ES
P
A
K
A
K
T
I
K
S
I
L
GNE
Y
E
V
F
A
SMGHIIDLPKSKFGVDLEKDF
E
P
E
F
A
VIKGK
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
L
L
I
ASDMD
R
E
G
E
A
I
A
W
H
I
A
R
V
T
NTLGRKN
R
I
V
F
SEIT
P
R
V
I
R
E
A
V
K
N
PREID
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
FK
S
N
L
S
AG
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
F
DG
L
T
A
E
I
DVK
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
ID
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
P
P
EPFK
T
S
T
L
Q
Q
E
A
Y
S
K
LGFS
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
KD
G
H
I
A
F
I
TYMRTDSTRVS
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
FGEEYVGAHEAIRPTNVFMTPEEAGKYLN
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
R
T
KDGK
Y
R
F
K
G
T
V
L
K
K
IFDGYEKVW
K
T
E
R
NTGEFPFEEG
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
K
P
KPRYT
E
G
S
L
V
K
E
M
E
R
L
GIGRPST
Y
A
S
T
I
K
L
L
L
N
R
GY
I
K
K
I
RG
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
KYSDVVS
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
GKKT
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
-----
R
I
V
V
D
-
F
P
T
N
Q
K
C
S
C
G
K
E
M
-
R
-
L
S
---
F
-
G
K
-
Y
------
G
F
Y
L
K
-
C
E
-
C
G
K
T
R
S
V
K
NDE
I
A
V
I
D
DGKIFL------------------------
6
HHSearch
45.65
21%
-150
- C4 -
1DL6
1
TF2B_HUMAN
A:
[10-38]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
V
T
C
P
N
H
P
D
A
I
-
L
-
V
E
---
D
-
Y
R
-
A
------
G
D
M
--
I
C
P
E
C
G
L
-------------------------------------------
24
HHSearch
45.24
19%
-24
- C6 -
5FMF
-
T2EA_YEAST
R:
[119-155]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
G
Y
M
C
P
I
C
L
T
K
Y
-
T
-
Q
L
---
E
-
A
V
-
Q
LLNFDR
T
E
F
L
--
C
S
L
C
D
E
P
------------------------------------------
8
HHSearch
44.35
28%
-32
- C6 -
3WWL
1
LYSW_THET8
A:
[3-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
C
P
E
C
G
A
E
L
-
R
-
L
E
---
N
-
P
E
--------
L
G
E
L
V
V
C
E
D
C
G
A
E
------------------------------------------
17
HHSearch
43.46
28%
-119
- C4 -
2K4X
1
RS27A_THEAC
A:
[16-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
H
R
F
C
P
R
C
G
P
G
V
-
F
-
L
A
---
E
-----------
H
A
D
R
Y
S
C
G
R
C
G
Y
-------------------------------------------
29
Fugue
43.44
18%
35
- C3 -
1I17
-
PRND_MOUSE
A:
[1-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVAENRPG
A
F
I
K
QG
R
K
L
D
I
DFG
A
E
G
N
R
Y
Y
A
A
N
Y
W
Q
---------
F
P
D
G
I
Y
Y
E
G
C
S
---------
E
A
---
N
-
V
T
-
K
------
E
M
L
V
T
S
C
V
N
A
T
Q
A
A
N
Q
A
E
F
S
R
E
KQDS
K
L
H
Q
R
V
L
W
R
L
I
K
E
I
C
S
A
KHCDFW
L
E
R
G
A
A
19
HHSearch
42.72
31%
41
- C6 -
5FLM
1
RPB9_BOVIN
I:
[16-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
Q
E
C
N
N
M
L
-
Y
P
K
E
---
D
-
K
E
-
N
------
R
I
L
L
Y
A
C
R
N
C
D
Y
Q
------------------------------------------
22
HHSearch
41.21
31%
-17
- C6 -
1TWF
1
RPB9_YEAST
I:
[6-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
R
D
C
N
N
M
L
-
Y
-
P
R
---
E
-
D
K
E
N
------
N
R
L
L
F
E
C
R
T
C
S
Y
V
------------------------------------------
21
HHSearch
41.10
28%
-32
- C6 -
3QT1
1
RPB9_YEAST
I:
[26-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
R
D
C
N
N
M
L
-
Y
-
P
R
---
E
D
K
E
-
N
------
N
R
L
L
F
E
C
R
T
C
S
Y
V
------------------------------------------
9
HHSearch
40.54
16%
-132
- C6 -
1VD4
1
A:
[13-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
F
K
C
P
V
C
S
S
T
F
T
D
-
L
E
A
N
Q
L
-
F
D
-
P
------
M
T
G
T
F
R
C
T
F
C
H
T
E
------------------------------------------
34
Fugue
40.36
17%
-61
- C5 -
1M9O
1
A:
[4-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
S
S
R
Y
K
T
E
L
C
R
T
Y
S
E
S
G
R
-
C
R
Y
G
--
A
K
C
Q
F
A
H
-
G
-
L
G
---
E
-
L
R
-
Q
------
A
N
-----------------------------------------------------