@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25960: (2016-07-11 )
MITQLYRERTAADLKNRISKVLLNGNETEIVELTIQGAVVTVLTQREEDIKHIKSVQILDDQNNVITERTTDLDVSNNRTLDFRITFEVV
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----...-----......20------.....---....30.....----------...40----........50---.......-----.-----60........70........80........90----------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
Q
L
Y
R
E
R
T
------
A
A
D
-----
L
K
N
R
I
S
K
-------
V
LLNG---NE
T
E
I
V
E
L
T
IQ----------G
A
V
V
T
----
V
L
TQ
R
E
E
D
I
K
---
H
I
K
S
V
Q
I
-----L-----DDQN
N
V
I
TERTTDLDVSNN
R
T
L
D
F
R
I
T
F
E
VV-----------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
60.30
20%
47
- C4 -
1PU1
-
Y677_METTH
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLR
K
L
T
E
G
D
L
D
E
I
------
S
S
F
-----
L
H
N
T
I
S
D
-------
F
I
L
K
R
---
V
S
A
K
----
E
I
V
----------
D
I
D
I
T
----
V
L
V
E
Y
T
D
E
L
K
---
V
D
I
S
A
E
L
-----
Y
L
D
EL
S
D
A
D
P
G
I
V
D
E
A
V
D
A
A
Y
R
S
L
E
S
F
L
D
G
F
R
E
---------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
49.29
14%
2
- C4 -
1TKN
-
A4_HUMAN
A:
[460-569]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
E
A
M
L
N
D
R
R
------
R
L
A
-----
L
E
N
Y
I
T
A
-------
L
Q
A
V
P
---
P
R
P
R
H
V
F
N
M
L
K
----------
K
Y
V
R
A
----
E
Q
K
D
R
Q
H
T
L
K
---
H
F
E
H
V
R
M
V
D
P
K
K
A
-----
A
Q
I
R
S
Q
V
M
T
H
L
R
V
I
Y
E
R
M
N
Q
S
L
S
L
L
Y
N
V
P
A
V
A
E
E
I
Q
D
E
V
D
E
L
L
Q
KE--------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
48.35
26%
42
* C5 *
5CVL
9
WDR48_HUMAN
A:
[27-578]
R
R
K
V
Q
V
S
Y
V
IRDEVEKYNRNGVN
A
L
Q
L
D
PALN
R
L
F
T
A
G
RDS
I
I
R
I
W
S
VNQHKQDPYI
A
S
M
E
HHTDWVN
D
I
V
L
C
CNGK
T
L
I
S
A
S
SDT
T
V
K
V
W
NAHK
G
F
C
M
S
TLRTHKDYVK
A
L
A
Y
AKDKE
L
V
A
S
A
G
LDR
Q
I
F
L
W
D
V
N
T
L
T
A
LTASNN
T
V
T
T
S
S
L
S
GNKDSIY
S
L
A
M
N
QLGT
I
I
V
S
G
STEK
V
L
R
V
W
D
PRTCAKL
M
K
L
K
G
HTDNVK
A
L
L
L
N
RDGT
Q
C
L
S
G
S
SDG
T
I
R
L
W
S
LGQQRCIATYRVHDEGVW
A
L
Q
V
N
DAFT
H
V
Y
S
G
G
RDR
K
I
Y
C
T
D
LRNPDIRVLICEEKAPV
L
K
M
E
L
D
R
S
A
D
PPP
A
I
W
V
A
T
-----
T
K
S
T
V
N
K
-------
W
T
L
K
G
-------
I
H
N
F
R
A
S
----------
G
P
I
T
P
----
L
C
T
Q
P
D
Q
V
I
K
G
G
A
S
I
I
Q
C
H
I
-----
L
-----
N
D
K
R
H
I
L
T
K
D
T
N
N
----
N
V
A
Y
W
D
V
L
K
A
C
K
V
E
DLGKVD
F
E
D
E
I
K
K
R
FKM
V
Y
V
P
NW
F
S
V
D
LKTG
M
L
T
I
T
L
D
ESDCFA
A
W
V
S
AKDAGFSSPDGSDPKLN
L
G
G
L
L
L
Q
A
L
L
E
YWPRTHVNPMDKGNGYFQVPPH
T
P
V
I
F
G
E
AG
G
R
T
L
F
RLLCRDSGG
E
T
E
S
M
L
L
N
E
T
VP
Q
W
V
I
D
I
TVDKNMPKFN
21
Fugue
45.78
20%
17
- C3 -
4K6L
2
?
G:
[1-224]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDFVYRVDSTPPDVIFRDGFSLLGYNRNFQQFISGRSCSGGSSDSRYIATTSSVNQTYAIARAYYSRST
F
K
G
N
L
Y
R
Y
Q
I
------
R
A
D
NNFYS
L
L
P
S
I
T
Y
-------
L
E
T
Q
G
GHF
N
A
Y
E
K
T
M
M
R
L
Q
----------
R
E
Y
V
S
----
T
L
S
I
L
P
E
N
I
Q
---
K
A
V
A
L
V
Y
-----------
D
S
A
T
G
L
V
K
D
G
V
S
T
M
N
-
A
S
Y
L
G
L
S
T
T
S
N
P
G
V
I
PFLPEPQTYTQQRIDAFGPLISSCFSIGSVCHSHRGQRADVYNMSFYDARPVIELILSK------------------------------------------------------------------------------------------
18
Fugue
43.50
14%
-1
- C4 -
1OI0
2
?
A:
[1-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
M
K
I
S
R
G
L
------
L
K
T
-----
I
L
E
A
A
K
S
A
HP
D
E
F
I
A
L
L
S
G
---
S
K
D
V
M
D
E
L
I
F
L
PFVSIGMKVF
G
T
V
H
S
H
PSP
S
C
R
P
S
E
E
D
L
S
---
L
F
T
R
--------
F
-----
G
K
Y
H
I
I
V
C
Y
P
Y
D
E
N
S
W
K
C
Y
N
R
K
G
E
E
V
E
L
E
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
43.21
34%
-134
* C4 *
1F93
-
HNF1A_MOUSE
H:
[5-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
L
Q
T
E
L
L
------
A
A
L
-----
L
E
S
G
L
S
K
-------
E
A
L
I
Q
---
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.72
13%
-319
- C7 -
2PH0
-
?
A:
[120-134]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
S
V
V
F
-----
F
-----
N
A
N
G
A
A
M
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
38.60
31%
-
- C4 -
3TZ1
-
B:
[11-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
I
M
Q
K
A
------
A
E
D
-----
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
34.83
36%
-236
- C1 -
4XPM
-
YC075_YEAST
B:
[13-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
-----
F
-----
D
T
H
G
N
V
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
34.24
7%
-297
- C7 -
2OVI
-
?
A:
[119-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
S
I
L
F
-----
F
-----
N
K
E
G
S
A
M
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
32.52
9%
-86
- C5 -
2JNE
2
YFGJ_ECOLI
A:
[31-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
L
H
C
P
Q
C
------
Q
H
V
-----
L
D
Q
D
N
G
H
-------
A
R
C
R
S
---
C
G
E
F
I
E
M
K
A
L
C
----------
P
D
C
H
Q
----
P
L
Q
V
L
K
A
C
-------
G
A
V
D
Y
-----
F
-----
C
Q
H
G
H
G
L
I
S
K
K
-------------
R
V
E
F
V
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.19
13%
-231
- C7 -
2HQV
-
?
A:
[144-158]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
S
V
W
F
-----
M
-----
N
A
A
G
G
A
M
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
30.12
17%
-123
* C6 *
2KMM
-
?
A:
[450-479]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
C
I
G
-------
A
K
V
N
H
---
K
L
V
P
L
S
Y
V
L
N
S
----------
G
D
Q
V
E
----
V
L
S
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.11
13%
-63
- C7 -
3FM2
-
?
A:
[82-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
Y
A
I
R
F
-----
L
-----
D
E
K
Q
E
S
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.03
9%
-107
- C7 -
4HMY
-
AP1S3_HUMAN
S:
[2-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
F
I
L
L
-----
F
-----
S
R
Q
G
K
L
R
L
Q
K
W
Y
I
T
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
28.62
13%
-145
- C7 -
2J0P
2
HEMS_YEREN
A:
[300-315]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
T
S
L
E
L
-----
F
-----
A
A
D
G
T
Q
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.25
18%
-44
- C7 -
3ZG9
-
?
A:
[5-20]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
I
I
-----
Y
-----
D
K
D
G
D
K
A
G
E
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
27.53
29%
-27
- C2 -
1YWY
-
?
A:
[55-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
A
E
A
R
L
S
V
-------
L
Y
I
D
G
---
K
R
L
H
I
S
E
E
D
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
24.44
25%
-94
- C- -
4HRS
-
SAMP2_HALVD
A:
[38-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-------
V
L
V
D
G
---
R
P
V
P
E
D
Q
S
V
-
E
----------
V
D
R
V
K
----
V
L
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
22.05
10%
-79
- C- -
1Z96
-
MUD1_SCHPO
A:
[295-332]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
L
N
S
K
I
A
Q
-------
L
V
S
M
G
---
F
D
P
L
E
A
A
Q
A
L
D
----------
A
A
N
G
D
----
L
D
V
A
A
S
F
L
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------