@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu34940: (2016-07-29 )
MKTLRTLCVLMILSGVIFFGLKIDAKDIDIPFLNSLKKVVSDSDTDSAANSKKELKGSAKPLDVILYNQMDAPRLYNGCEVTSLAMVLNYAGYDVTKNTLANQVATVPLTYSSGLKGDPNDGFVGDMANGPGLGVYHRPIYQLAKTYAGDKVSDLTGKSISAVYQQLEKGNPVWVITTANFTPVDNMQTWKTPNGTIEITYSEHSVAVTGYDDKYVYLNDPYGYKNRKTDRTSFEKAWKQMGSQAVVIQK
Atome Classification :
(20 SA)
---------------------.........10..-----...------------...20........30........40.......--.50........60.....-...70.----------.......80........90..--.--..-----...100.......110.......120.--------......--..--130.......140.....-..-----------150...-.--....160--....-....-.170....------...180-....--..-----.--..190..----------..--------.-----.----.200.......210.--.--------.-....220-..-----.-....230.......240.......250-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------MK
T
L
R
T
L
C
V
L
M
I
L
-----
S
G
V
------------
I
F
F
G
L
K
I
DAKDID
I
P
F
L
N
S
L
K
K
V
VSDSDTDSA--AN
S
K
K
E
LKGSAK
P
L
D
V
I
L
-YNQMDA----------PRLYNG
C
E
V
T
S
L
A
M
V
L
NYAGY--D--
V
T
-----
K
N
T
LANQ
V
A
T
V
P
L
T
YSSGLKGDPN--D--------GFVGDM--AN--GPGLG
V
Y
H
R
P
I
Y
Q
L
A
K
T
Y-AG-----------DK-
V
S
D-L--TG
K
S
I
----
S
A
V
Y
-
Q
Q
L
E-KGN
P
V
W
V
I
------TTAN---FTPV--DN-----M--QTWKTPN----------
G
T
--------
I
-----
E
----
I
T
YSE
H
S
V
A
V
TGYDD--
K
--------
Y
-
V
Y
LNDPY-GY-----K-NRKTD
R
T
S
F
E
K
A
W
K
QMGS
Q
A
V
V
I
QK---------------------------
29
Fugue
83.77
47%
14
- C5 -
3ERV
2
?
A:
[29-228]
-----------------------------------------------------------------------------------------------
D
E
K
V
I
L
S
N
V
P
F
-
I
Q
Q
L
------------
P
E
L
D
R
G
C
E
V
T
S
L
A
M
M
L
Q
Y
A
G
I
--
T
--
V
D
-----
K
M
K
L
A
N
E
I
K
K
V
D
-
F
M
N
D
G
V
R
G
N
P
N
--
E
--------
G
F
V
G
N
I
YT
F
S
--
E
S
G
Y
G
V
Y
H
G
P
L
F
Q
L
A
K
K
Y
-
L
P
-----------
N
K
-
A
V
D
-
L
--
T
G
K
S
I
----
E
E
L
Y
-
K
S
V
K
-
A
G
Q
P
V
V
I
I
------
T
N
A
T
---
F
A
P
L
--
D
E
-----
D
E
F
T
T
W
E
T
N
N
----------
G
D
--------
V
-----
S
----
I
T
Y
N
E
H
C
V
V
L
I
G
Y
D
Q
--
E
--------
S
-
V
Y
I
R
D
P
L
K
D
S
-----
L
-
D
V
K
V
P
R
E
K
F
E
Q
A
W
V
Q
M
G
S
Q
A
I
S
Y
V
K
RSK------------------------
1
PsiBlast_PDB
83.45
49%
11
- C5 -
3ERV
2
?
A:
[44-221]
---------------------------------------------------------------------------------------------------------------------------
P
E
L
D
R
G
C
E
V
T
S
L
A
M
M
L
Q
Y
A
G
I
--
T
--
V
D
-----
K
M
K
L
A
N
E
I
K
K
V
D
F
M
-
N
D
G
V
R
G
N
P
N
--
E
--------
G
F
V
G
N
I
YT
F
S
--
E
S
G
Y
G
V
Y
H
G
P
L
F
Q
L
A
K
K
Y
-
L
P
-----------
N
K
-
A
V
D
-
L
--
T
G
K
S
I
----
E
E
L
Y
-
K
S
V
K
-
A
G
Q
P
V
V
I
I
------
T
N
A
T
---
F
A
P
L
DE
D
E
-----
F
--
T
T
W
E
T
N
N
----------
G
D
--------
V
-----
S
----
I
T
Y
N
E
H
C
V
V
L
I
G
Y
D
Q
--
E
--------
S
-
V
Y
I
R
D
P
L
-
K
D
-----
S
L
D
V
K
V
P
R
E
K
F
E
Q
A
W
V
Q
M
G
S
Q
A
I
-------------------------------
6
HHSearch
83.42
46%
6
- C5 -
3ERV
2
?
A:
[29-224]
-----------------------------------------------------------------------------------------------
D
E
K
V
I
L
S
N
V
P
F
-
I
Q
Q
L
------------
P
E
L
D
R
G
C
E
V
T
S
L
A
M
M
L
Q
Y
A
G
I
--
T
--
V
D
-----
K
M
K
L
A
N
E
I
K
K
V
D
F
M
-
N
D
G
V
R
G
N
P
N
--
E
--------
G
F
V
G
N
I
--
Y
T
FS
E
S
G
Y
G
V
Y
H
G
P
L
F
Q
L
A
K
K
Y
L
P
N
------------
K
-
A
V
D
-
L
--
T
G
K
S
I
----
E
E
L
Y
-
K
S
V
K
-
A
G
Q
P
V
V
I
I
------
T
N
A
T
---
F
A
P
L
DE
D
E
-----
F
--
T
T
W
E
T
N
N
----------
G
D
--------
V
-----
S
----
I
T
Y
N
E
H
C
V
V
L
I
G
Y
D
Q
--
E
--------
S
-
V
Y
I
R
D
P
L
-
K
D
-----
S
L
D
V
K
V
P
R
E
K
F
E
Q
A
W
V
Q
M
G
S
Q
A
I
S
Y
V
----------------------------
21
HHSearch
48.46
22%
-116
- C5 -
4X6H
6
CATK_HUMAN
A:
[117-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
----
K
A
L
K
-
R
A
V
A
-
R
V
G
P
V
S
V
A
------
I
D
A
S
---
L
T
S
----------
F
--
Q
F
Y
--
S
K
----------
G
V
--------
Y
Y
D
ESC
N
----
S
D
N
L
N
H
A
V
L
A
V
G
Y
G
I
--
Q
KG
N
K
----
H
-
W
I
I
K
N
S
W
-
G
------------------------------------------------------------
8
HHSearch
46.62
19%
-78
- C5 -
3K8U
-
?
A:
[5-132]
------------------------------------------------------------------------------------------------------
H
Y
K
L
-
V
P
Q
I
D
--------------
T
R
D
C
G
P
A
V
L
A
S
V
A
K
H
Y
G
S
--
N
--
Y
S
-----
I
A
Y
L
R
E
L
S
K
T
N
K
--------------------------------------
Q
G
T
T
A
L
G
I
V
E
A
A
K
K
L
-
G
F
------------
E
-
T
R
S
-
I
--
K
-
A
D
M
----
T
L
F
--
D
Y
N
D
-
L
T
Y
P
F
I
V
H
------
V
I
K
G
----------------------------------------------------------
K
R
L
Q
H
Y
Y
V
V
Y
G
S
Q
N
--
N
--------
Q
-
L
I
I
G
D
P
D
-
P
S
V----
K
-
V
T
R
M
S
K
E
R
F
Q
S
E
W
T
--------------------------------------
9
HHSearch
45.25
14%
-109
- C5 -
4RY2
-
?
A:
[12-146]
---------------------------------------------------------------------------------------------------------
C
-
V
R
Q
Y
D
--------------
L
T
D
C
G
A
A
C
L
S
S
I
A
Q
Y
Y
G
L
--
K
--
M
S
-----
L
A
K
I
R
E
M
T
G
T
D
T
------------------------------------
Q
--
G
T
N
A
Y
G
L
I
H
A
A
K
Q
L
-
G
F
------------
S
-
A
K
G
-
V
--
K
-
A
S
K
----
E
D
L
L
-
K
--
D
-
F
R
L
P
A
I
A
N
------
V
I
V
D
----------------------------------------------------------
N
R
L
A
H
F
V
V
I
Y
S
I
K
N
--
R
--------
I
-
I
T
V
A
D
P
G
-
K
G
-----
I
--
V
R
Y
S
M
D
D
F
C
S
I
W
T
G
-------------------------------------
11
HHSearch
44.73
17%
-82
- C5 -
3ZUA
-
HLYB3_ECOLX
A:
[6-119]
------------------------------------------------------------------------------------------------------------------------------
K
I
D
Y
G
L
Y
A
L
E
I
L
A
Q
Y
H
N
V
--
S
--
V
N
-----
P
E
E
I
K
H
R
F
D
T
D
G
--------------------------------------
T
G
L
G
L
T
S
W
L
L
A
A
K
S
L
-
E
L
------------
K
-
V
K
Q
-
V
---
K
K
T
I
----
D
----
R
L
N
F
-
I
S
L
P
A
L
V
W
------
R
E
-------------------------------------------------------------
D
G
R
H
F
-
I
L
T
K
V
S
K
EA
N
--------
R
-
Y
L
I
F
D
L
E
-
Q
R
-----
N
-
P
R
V
L
E
Q
S
E
F
E
A
L
Y
Q
--------------------------------------
23
HHSearch
44.30
21%
-96
- C5 -
2XU3
3
CATL1_HUMAN
A:
[118-190]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
----
K
A
L
M
-
K
A
V
A
-
T
V
G
P
I
S
V
A
------
I
D
A
G
H
E
S
F
L
F
Y
--
K
E
--------
G
I
Y
F
E
P
D
----------
C
---------------
S
----
S
E
D
M
D
H
G
V
L
V
V
G
Y
G
F
--
E
STESDNN
K
Y
-
W
L
V
K
N
S
W
-
G
------------------------------------------------------------
12
HHSearch
44.04
23%
-44
- C5 -
2BU3
3
?
A:
[78-233]
------------------------------------------------------------------------------------------------------------------------------
Q
A
Y
C
G
V
A
S
I
I
M
V
L
N
S
L
G
I
--
N
--
A
-Y
R
V
F
T
Q
D
N
F
F
S
---
T
K
A
--------
V
I
A
---
P
--------
E
V
V
----------
A
R
Q
G
M
T
L
D
E
L
G
R
L
I
A
S
Y
-
G
V
------------
K
-
V
K
V
-
N
H
A
S
D
T
N
I
E
D
F
R
K
Q
V
A
-
E
N
L
K
Q
D
G
N
F
V
I
V
N
------
Y
L
R
K
---
E
------------------------------------------
I
-----
G
----
Q
E
R
G
G
H
I
S
P
L
A
A
Y
N
E
QT
D
--------
R
-
F
L
I
M
D
V
S
-
R
Y
KY---
P
-
P
V
W
V
K
T
T
D
L
W
K
A
M
N
--------------------------------------
16
HHSearch
40.42
16%
-137
- C- -
3BB7
-
?
A:
[275-338]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
M
----
D
I
V
F
-
S
E
L
T
-
K
G
H
P
L
I
Y
G
------
G
V
-------------------------------------------------------------
D
A
G
H
A
F
V
I
D
G
Y
N
K
A-
G
--------
L
-
V
S
V
N
W
G
W
-
N
G
-----
D
V
D
G
Y
Y
K
I
D
L
L
N
------------------------------------------
25
HHSearch
40.39
22%
-95
- C5 -
3I06
1
CYSP_TRYCR
A:
[121-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
----
A
Q
I
A
-
A
W
L
A
-
V
N
G
P
V
A
V
A
------
V
D
A
S
----------
S
-----
W
--
M
T
Y
T
--
G
----------
G
V
--------
M
TSC--
V
----
S
E
Q
L
D
H
G
V
L
L
V
G
Y
N
D
--
S
AA
V
P
----
Y
-
W
I
I
K
N
S
W
-
T
------------------------------------------------------------
26
HHSearch
40.26
16%
-93
- C5 -
1DEU
-
CATZ_HUMAN
A:
[138-219]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----
E
K
M
M
-
A
E
I
Y
-
A
N
G
P
I
S
C
G
------
I
M
A
T
---
E
------
R
-----
L
--
A
N
Y
T
--
G
----------
G
I
--------
Y
A
E
Y
Q
-
D
----
T
T
Y
I
N
H
V
V
S
V
A
G
W
G
I
--
S
DG
T
E
----
Y
-
W
I
V
R
N
S
W
-
G
E
PWGER
G
-
W
L
R
I
V
T
S
T
Y
-------------------------------------------
7
HHSearch
39.62
13%
-6
- C5 -
1CV8
2
A:
[21-155]
------------------------------------------------------------------------------------------------------------------------------
N
G
W
C
A
G
Y
T
M
S
A
L
L
N
A
T
Y
N
TN
K
--
Y
H
-----
A
E
A
V
M
R
F
L
H
P
N
L
Q
-------
G
Q
-------------
Q
F
Q
---------
F
T
--
G
L
T
P
R
E
M
I
Y
F
G
Q
T
Q
-
G
R
------------
S
-
P
Q
L
-
L
N-
R
M
T
T
Y
----
N
E
V
D
-
N
L
T
K
-
N
N
K
G
I
A
I
L
------
G
S
R
V
---------------------
E
S
R
----------------------------
N
----
G
M
H
A
G
H
A
M
A
V
V
G
N
A
K
--
L
NNG
Q
E
---
V
-
I
I
I
W
N
P
W
-
D
N
-----
G
-
F
M
T
Q
D
A
K
N
N
-------------------------------------------
18
HHSearch
36.57
15%
-43
- C5 -
3OIS
-
?
A:
[190-276]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
----
D
H
L
K
-
A
C
L
A
-
V
G
S
P
F
V
F
G
------
F
S
V
Y
---
N
------
S
-----
W
--
V
G
N
N
--
S
----------
L
P
VRIPLPTK
N
-----
D
----
T
L
E
G
G
H
A
V
L
C
V
G
Y
D
D
--
E
IR------
H
-
F
R
I
R
N
S
W
-
G
N
NVGED
G
-
Y
F
W
M
P
Y
E
Y
I
S
N
-----------------------------------------
19
HHSearch
36.51
16%
-84
- C5 -
1M6D
1
CATF_HUMAN
A:
[117-184]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
Q
K
L
A
-
A
W
L
A
-
K
R
G
P
I
S
V
A
------
I
N
A
F
---
G
M
Q
F
--
Y
R
-----
H
--
G
I
S
R
P
L
R
----------
P
L
--------
C
-----
S
----
P
W
L
I
D
H
A
V
L
L
V
G
Y
G
Q
--
R
SD
V
P
----
F
-
W
A
I
K
N
S
W
-
G
------------------------------------------------------------
37
Fugue
36.46
18%
-28
- C4 -
4MT7
-
ARHG9_RAT
A:
[45-381]
Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
R
H
Y
I
K
H
L
K
D
I
C
E
G
Y
L
K
-----
Q
C
R
K
R
RDMFS
D
E
Q
L
K
V
I
F
G
N
I
E
D
I
Y
R
F
Q
M
G
F
V
R
D
L
E
K
Q
Y
N
N
D
D
P
H
L
S
EI
G
P
C
F
L
E
H
Q
D
G
F
W
I
Y
S
E
Y
C
-
N
N
H
L
D
A
C
M
E
L
S
K
L
M
K
D
S
R
Y
Q
H
F
F
E
A
C
R
L
L
Q
Q
M
I
D
I
A
I
--
D
--
G
F
-----
L
L
T
P
V
Q
K
I
C
K
Y
P
L
Q
L
A
E
L
L
K
Y
T
A
Q
--
D
HSD
Y
R
Y
V
A
A
A
L
A
V
M
--
R
N
V
-
T
Q
Q
I
N
E
R
K
R
R
L
E
N
I
D
K
I
A
-
Q
W
-----------
Q
A
S
V
L
D
-
W
--
E
G
D
D
I
----
L
D
R
S
S
E
L
I
Y
-
T
G
E
M
A
W
I
Y
QPY
G
R
N
Q
Q
R
V
---
F
F
L
F
--
D
H
-----
Q
--
M
V
L
C
K
K
D
LIRRD
I
L
Y
Y
K
G
R
--------
I
-----
D
----
M
D
K
Y
E
V
I
D
I
E
D
G
R
D
D
--
D
--------
F
N
V
S
M
K
N
A
F
-
K
L
-----
H
-
N
K
E
T
E
E
V
H
L
F
F
A
-
K
K
L
E
E
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G------------
13
HHSearch
36.12
13%
-17
- C5 -
1X9Y
-
SSPB_STAAU
A:
[228-365]
----------------------------------------------------------------------------------------------------
L
K
N
F
K
I
R
E
Q
Q
F
D
--------------
N
S
W
C
A
G
F
S
M
A
A
L
L
N
A
T
K
N
--
T
DT
Y
N
-----
A
H
D
I
M
R
T
L
Y
P
E
V
S
-------
E
Q
-------------
D
L
P
----------
N
C
-
A
T
F
P
N
Q
M
I
E
Y
G
K
S
Q
-
G
R
------------
D
-
I
H
Y
Q
E
--
G
V
P
S
Y
----
N
Q
V
D
-
Q
L
T
K
-
D
N
V
G
I
M
I
L
------
A
Q
-----------------------
S
V
S
Q
N
--------------------
P
-----
N
----
D
P
H
L
G
H
A
L
A
V
V
G
N
A
K
--
I
ND
Q
E
----
K
-
L
I
Y
W
N
P
W
-
D
T
-----
E
-----------------------------------------------------
27
HHSearch
35.07
15%
-85
* C5 *
3CBJ
-
?
A:
[162-228]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
----
K
D
I
M
-
A
E
I
Y
-
K
N
G
P
V
E
G
A
------
F
S
V
Y
---
S
------
D
-----
F
--
L
L
Y
K
--
S
----------
G
V
--------
Y
-----
Q
H
V
T
G
E
M
M
G
G
H
A
I
R
I
L
G
W
G
V
--
E
NG
T
P
----
Y
-
W
L
V
A
N
S
W
-
N
------------------------------------------------------------
33
Fugue
34.73
11%
40
* C4 *
1V9D
1
DIAP1_MOUSE
A:
[6-337]
-------------VKELKVLD
S
K
T
A
Q
N
L
S
I
F
L
G
S
F
RMP
Y
Q
E
I
------------
K
N
V
I
L
E
V
N
E
A
V
L
T
E
S
M
I
Q
N
L
I
K
Q
M
P
E
P
E
Q
L
K
M
--
L
S
E
L
K
E
E
Y
D
D
L
A
E
S
E
Q
F
G
-
V
V
M
G
T
V
----------
P
R
L
R
P
R
L
N
A
I
L
F
K
L
Q
F
S
E
Q
V
E
--
N
--
I
K
-----
P
E
I
V
S
V
T
A
A
C
E
E
L
R
K
S
E
N
F
S
S
L
L
S
F
L
C
--------
K
L
R
D
T
K
--
S
A
--
D
Q
K
M
T
L
L
H
F
L
A
E
L
C
E
N
D
H
-
P
E
VLK
F
P
D
E
L
AH
V
E
K
-
A
S
R
-
V
--
S
A
E
N
L
----
Q
K
S
L
-
D
Q
M
K
-
K
Q
I
A
D
V
E
R
------
D
V
Q
N
---
F
P
A
A
--
T
D
EKDK
F
V
--
E
K
M
T
S
F
V
----------
K
D
--------
A
-----
Q
----
E
Q
Y
N
K
L
R
M
M
H
S
N
M
E
T
--
L
--------
Y
-
K
E
L
G
D
Y
F
-
V
F
-----
D
-
P
K
K
L
S
V
E
E
F
F
M
D
L
H
N
F
R
N
M
F
L
Q
A
V
K
E
N
Q
K
R
R
E
T
E
E
K
M
R
R
A
K
L
A
K
E
K
A
E
K
E
R
L
28
HHSearch
34.71
19%
-71
- C5 -
3QSD
1
?
A:
[158-224]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
----
K
A
I
Q
-
K
E
I
M
-
K
Y
G
P
V
E
A
G
------
F
T
V
Y
---
E
------
D
-----
F
--
L
N
Y
K
--
S
----------
G
I
--------
Y
KHI
T
-
G
----
E
T
L
G
G
H
A
I
R
I
I
G
W
G
V
--
E
NK
A
P
----
Y
-
W
L
I
A
N
S
W
-
N
------------------------------------------------------------