@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu36770: (2016-08-01 )
MKKKQVSHAIIISVMLSFVIAVFHTIHASELTPLAQMAEGMERQDVSIDKWTLHAKQNLSLTEKEFYQKVQRLKQEYRQYDWVIAREDKMIKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSYLLYEQMSLETPDSWNDTYEQFERETLGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTPIVTTEY
Atome Classification :
(20 SA)
------.......--------..10...-..-----------...20..-......30......--------------..40........50.....----.-..60........70........80.....-----..-.90..---..--....100....-...110.......120....------...-----130....-....140....--------...150.......160.......170.-.....-----------.180.......--190-.-....---------..200--......--.-----------210...---....-220....-...230--.........-----240.-...------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------MKKKQ
V
S
--------
H
A
I
I
I
S
V
-
M
L
-----------
S
F
V
I
A
V
F
-
H
T
I
H
A
S
E
LT
P
L
A
Q
M
--------------
A
E
GMERQDVSI
D
K
W
T
L
H
AK----Q-NLSL
T
E
K
E
F
Y
Q
K
V
Q
R
L
K
Q
E
Y
R
QY
D
W
V
I
AR-----ED-
K
M
I
K
A
---
I
G--TYTDKKNR
T
S
F
-
R
L
Q
L
V
T
T
L
K
KHNPT
S
Y
L
L
Y
E
------QMS-----L-ETPDS-W
N
D
T
Y
E
Q
F
E
R
E
--------
T
L
G
I
F
QE
K
V
V
I
F
T
CLNGHLDDN
M
N
I
V
L
-
Q
K
K
A
N
-----------
Q
L
L
N
E
F
Q
A
R
S
V
--
E
H
V-V-EP
N
F
---------
V
S
I
S
A
--
F
T
D
E
W
E
--
E
-----------
Y
I
M
TSK---
H
K
M
N
-
L
Q
I
A
L
RS-AGMG----G
K
H
T
V
T
VGT-----
P
I
VT-TEY------------------------------------------------------------
1
PsiBlast_PDB
79.90
96%
-97
- C10 -
2FPN
-
YWMB_BACSU
A:
[1-214]
---------------------------------------------------------
L
T
P
L
A
Q
M
--------------
A
E
G
M
E
R
Q
D
V
S
I
D
K
W
T
L
H
A
K
----
Q
-
N
L
S
L
T
E
K
E
F
Y
Q
K
V
Q
R
L
K
Q
E
Y
R
Q
Y
D
W
V
I
A
R
-----
E
D
-
K
M
I
K
A
---
I
G
--
T
Y
T
D
K
K
N
R
T
S
F
-
R
L
Q
L
V
T
T
L
K
K
H
N
P
T
S
Y
L
L
Y
E
------
Q
M
S
-----
L
-
E
T
P
D
S
-
W
N
D
T
Y
E
Q
F
E
R
E
--------
T
L
G
I
F
Q
E
K
V
V
I
F
T
C
L
N
G
H
L
D
D
N
M
N
I
V
L
-
Q
K
K
A
N
-----------
Q
L
L
N
E
F
Q
---
V
--
E
H
V
-
V
-
E
P
N
F
---------
V
S
I
S
A
--
F
T
D
E
W
E
--
E
-----------
Y
I
M
T
S
K
---
H
K
M
N
-
L
Q
I
A
L
R
S
-----------
H
T
V
T
V
G
T
-----
P
I
V
T
-
T
--------------------------------------------------------------
7
HHSearch
77.39
100%
-49
- C10 -
2FPN
-
YWMB_BACSU
A:
[3-214]
-----------------------------------------------------------
P
L
A
Q
M
--------------
A
E
G
M
E
R
Q
D
V
S
I
D
K
W
T
L
H
A
K
----
Q
-
N
L
S
L
T
E
K
E
F
Y
Q
K
V
Q
R
L
K
Q
E
Y
R
Q
Y
D
W
V
I
A
R
-----
E
D
-
K
M
I
K
A
---
I
G
--
T
Y
T
D
K
K
N
R
T
S
F
-
R
L
Q
L
V
T
T
L
K
K
H
N
P
T
S
Y
L
L
Y
E
------
Q
M
S
-----
L
E
T
-
P
D
S
-
W
N
D
T
Y
E
Q
F
E
R
E
--------
T
L
G
I
F
Q
E
K
V
V
I
F
T
C
L
N
G
H
L
D
D
N
M
N
I
V
L
-
Q
K
K
A
N
-----------
Q
L
L
N
E
F
Q
---
V
--
E
H
V
-
V
-
E
P
N
F
---------
V
S
I
S
A
--
F
T
D
E
W
E
--
E
-----------
Y
I
M
T
S
K
---
H
K
M
N
-
L
Q
I
A
L
R
S
-----------
H
T
V
T
V
G
T
-----
P
I
V
T
-
T
--------------------------------------------------------------
5
PsiBlast_PDB
36.64
48%
-277
- C10 -
2IW3
1
EF3A_YEAST
A:
[402-426]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
K
A
K
-----------
D
I
L
D
E
F
R
K
R
A
V
--
D
N
I
P
V
-
G
P
N
F
----------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
36.27
15%
22
- C3 -
4QVG
-
?
A:
[4-344]
--ELSA
L
V
P
V
L
F
G
--------
H
A
A
F
Q
Q
L
-
N
A
-----------
G
C
Q
L
G
L
F
-
E
L
L
H
E
R
G
P
L
S
A
E
E
V
--------------
A
D
A
L
R
L
P
R
R
S
A
D
I
L
L
L
G
T
T
----
A
L
G
L
S
T
V
T
D
G
G
Y
R
N
G
A
P
I
G
A
A
F
R
D
G
L
W
P
V
L
R
-----
D
I
V
Q
Y
Q
D
K
---
I
A
--
Y
Q
P
A
A
D
Y
V
E
S
L
-
R
T
G
Q
N
A
G
I
R
H
F
P
G
T
T
R
D
L
Y
S
------
R
L
A
A
V
PG
L
E
-
E
L
F
Y
R
-
G
M
H
A
W
S
Q
L
S
N
P
--------
V
L
L
A
Q
P
D
F
T
R
V
H
R
V
L
D
V
G
G
G
D
A
V
N
A
V
A
-
L
A
R
A
H
PS
L
R
V
T
V
L
D
R
P
G
A
L
E
V
A
R
K
T
I
A
--
E
A
G
-
L
-
E
E
R
V
---------
R
T
H
A
A
DI
F
T
D
S
Y
P
--
A
GHD
C
V
L
F
A
HQL
V
I
W
S
P
E
---
Q
N
L
T
-
L
L
R
K
A
Y
D
-
A
V
E
P
----
G
G
R
V
L
V
F
N
A
-----
F
T
D
D
-
D
R
T
GP
L
Y
A
A
L
D
N
V
Y
F
T
T
LPF
R
H
S
T
IHR
W
A
D
C
E
S
W
L
R
E
A
GFTD
V
G
R
T
A
P
P
GWTP
H
G
V
V
S
G
S
R
P
R
8
HHSearch
32.71
63%
-127
- C1 -
1PP5
-
A:
[10-17]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
G
I
G
T
-----
P
I
------------------------------------------------------------------
6
PsiBlast_PDB
29.33
48%
-142
- C10 -
2IX8
-
A:
[1396-1420]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
K
A
K
-----------
D
I
L
D
E
F
R
K
R
A
V
--
D
N
I
P
V
-
G
P
N
F
----------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
29.20
8%
-401
- C2 -
4JG9
-
?
A:
[49-60]
-------------------------------------------------------------------------------------
V
L
K
D
V
N
W
E
E
T
P
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
28.83
20%
78
- C- -
4RWR
-
?
A:
[63-331]
---VYR
E
K
Q
K
K
V
E
SLP
M
E
E
Y
V
T
G
V
V
A
S
E
M
N
A
-----------
S
F
E
I
E
A
L
-
K
A
Q
A
L
A
A
R
T
F
V
V
Q
R
M
-------------
L
S
G
G
K
K
N
N
---------------
A
-
D
V
T
D
T
D
Q
V
Y
K
S
K
E
E
L
K
K
Q
W
G
N
N
Y
E
N
N
L
K
K
-----
I
E
-
E
A
V
S
K
---
T
A
G
Q
V
L
T
Y
E
G
K
P
I
S
A
-
S
F
F
S
T
S
N
G
R
T
E
N
A
A
D
Y
W
G
N
D
------
Y
P
Y
-----
L
-
K
S
V
D
S
P
W
D
Q
A
S
P
K
F
T
S
E
Q
I
F
-----
T
V
A
D
F
Q
K
R
L
G
V
K
V
L
A
D
G
K
V
G
D
I
K
G
R
T
E
-
G
K
R
V
K
-----------
D
V
A
F
Q
G
K
T
L
T
G
--
R
D
V
-
R
-
D
K
L
E
---------
L
R
S
S
D
--
F
T
W
K
Q
E
GD
K
-----------
I
V
V
T
T
K
G
FG
H
G
V
G
M
S
Q
Y
G
A
N
G
M
A
A
E
G
----
K
K
Y
T
D
I
V
A
H
Y
Y
KG
V
E
I
K
T
M
N
D
Y
------------------------------------------------------------
23
Fugue
25.71
17%
16
- C7 -
19HC
15
CYC9_DESDA
A:
[1-292]
-----A
A
L
E
P
T
D
S
--------
G
A
P
S
A
I
V
-
M
F
PVGEKPNPKGA
A
M
K
P
V
V
F
N
H
L
I
H
E
K
K
I
A
D
C
E
T
C
HHTGDPVSCSTCHT
V
E
G
K
A
E
G
D
Y
I
T
L
D
R
A
M
H
A
T
DIAA
R
-
A
K
G
N
T
P
T
S
C
V
S
C
H
Q
S
E
T
K
E
R
R
E
C
A
G
C
H
A
I
TTPKD
D
E
-
A
W
C
A
T
---
C
H
--
D
I
T
P
S
M
T
P
S
E
M
-
Q
K
G
I
A
G
T
L
L
P
G
D
N
E
A
L
A
A
E
T
------
V
L
A
-----
E
-
A
T
V
A
P
-
V
S
P
M
L
A
P
Y
K
V
V
IDALADKY
E
P
S
D
F
T
H
R
R
H
L
T
S
L
M
E
S
I
K
D
D
K
L
A
Q
A
F
-
H
D
K
P
E
-----------
I
L
C
A
T
C
H
H
R
S
P
--
L
S
L
-
T
-
P
P
K
C
---------
G
S
C
H
T
-------
K
--
E
-----------
I
D
A
A
D
P
---
G
R
P
N
-
L
M
A
A
Y
H
L
-
E
C
M
G
----
C
H
K
G
M
A
V
A
R
-----
P
R
D
T
-
D
C
T
TCHKAAA-----------------------------------------------------
20
Fugue
23.83
21%
-174
* C10 *
3HRO
-
PKD2_HUMAN
A:
[834-870]
------------------------------------------------------------------------------------------------------------------------
V
S
Y
E
E
F
Q
V
L
V
R
R
-----
V
D
-
R
M
E
H
S
---
I
G
--
S
I
V
S
K
I
D
A
V
I
V
-
K
L
E
I
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
23.24
29%
39
- C10 -
2IWH
3
EF3A_YEAST
A:
[391-477]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
T
P
Y
M
T
I
F
L
H
E
K
K
A
K
-----------
D
I
L
D
E
F
R
K
R
A
V
--
D
N
I
P
V
-
G
P
N
F
D
D
EEDEGED
L
C
N
C
E
--
F
S
L
A
Y
G
--
A
-----------
K
I
L
L
N
K
---
T
Q
L
R
-
L
K
R
A
R
R
Y
-
G
I
C
G
PNGC
G
K
S
T
L
-----------------------------------------------------------------------------
22
Fugue
22.78
9%
61
- C6 -
3TDG
2
?
A:
[32-263]
Q
D
N
L
V
S
V
I
E
K
Q
T
N
--------
K
K
V
R
I
L
E
-
I
K
-----------
P
L
K
S
S
Q
D
-
L
K
M
V
V
I
E
D
P
D
T
K
Y
N
--------------
I
P
L
V
V
S
K
D
---
G
N
L
I
I
G
L
S
----
N
-
I
F
F
S
N
K
S
D
D
V
Q
L
V
A
E
T
N
Q
K
V
Q
A
L
N
A
T
Q
Q
N
-----
S
A
-
K
L
N
A
I
---
F
N
--
E
I
P
A
D
Y
A
------
I
E
L
P
S
T
N
A
A
N
K
D
K
I
L
Y
I
V
S
-------------------
D
P
-
M
C
P
H
C
Q
K
E
L
T
K
--------
L
R
D
H
L
K
E
-
N
T
V
R
M
V
V
V
G
W
L
----
G
V
N
S
-
A
K
K
A
A
-----------
L
I
Q
E
E
M
A
K
A
R
A
R
G
A
S
V
-
E
-
D
K
I
S
---------
I
L
E
K
I
--
Y
S
T
Q
Y
D
--
I
-----------
N
A
Q
K
E
P
---
E
D
L
R
-
T
K
V
E
N
T
T
-
K
K
I
F
----
E
S
G
V
I
K
-
G
V
-----
P
F
L
Y
-
H
Y
-------------------------------------------------------------
15
HHSearch
22.31
12%
-118
- C10 -
1EH1
-
RRF_THET8
A:
[61-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
D
P
R
T
---------
L
V
V
Q
S
--
W
D
Q
N
A
L
--
K
-----------
A
I
E
K
A
I
---
R
D
S
D
-
L
G
L
N
P
S
N
---------
K
G
D
A
L
Y
I
N
I
-----
P
P
L
T
-
E
E
R
------------------------------------------------------------
4
PsiBlast_PDB
21.97
29%
22
- C10 -
2IX3
3
EF3A_YEAST
A:
[391-477]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
T
P
Y
M
T
I
F
L
H
E
K
K
A
K
-----------
D
I
L
D
E
F
R
K
R
A
V
--
D
N
I
P
V
-
G
P
N
F
DDEEDEGED
L
C
N
C
E
--
F
S
L
A
Y
G
--
A
-----------
K
I
L
L
N
K
---
T
Q
L
R
-
L
K
R
A
R
R
Y
-
G
I
C
G
P
NGC
G
K
S
T
L
-----------------------------------------------------------------------------
19
Fugue
21.71
16%
-35
- C10 -
2VTY
-
F1_VACCA
A:
[34-186]
---------------------------------------------------------
V
Y
P
L
P
E
N
--------------
M
V
Y
R
F
D
K
S
T
N
I
L
D
Y
-
L
S
T
E
----
R
-
D
H
V
M
M
A
V
R
Y
Y
M
S
K
Q
R
L
D
D
L
Y
R
Q
L
P
---
T
K
-----
T
R
-
S
Y
I
D
I
---
I
N
--
I
Y
C
D
K
V
S
N
D
Y
M
A
S
T
K
S
F
T
V
Y
D
I
N
N
E
V
N
T
I
M
L
D
------
N
K
G
-----
L
-
G
V
R
L
A
-
T
I
S
F
I
T
E
L
G
R
R
--------
C
M
N
-
P
V
K
T
I
K
M
F
T
L
L
S
H
T
I
C
D
D
C
F
V
D
Y
-
I
T
D
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
18.32
32%
41
- C5 -
3UV1
-
ALL7_DERFA
A:
[64-141]
----------------------------------------------------------------------------------------------------------------------
L
K
Q
M
K
R
Q
G
D
A
N
V
K
G
-----
E
E
-
G
I
V
K
A
H
L
L
I
G
--
V
H
D
D
I
---
V
S
M
-
E
Y
D
L
A
Y
K
L
G
D
L
H
P
T
T
H
V
I
S
D
IQD
F
V
V
A
L
S
-----
L
-
E
I
P
D
E
-
G
N
I
T
M
T
S
F
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
15.98
14%
-5
- C10 -
1Y9L
2
MXIM_SHIFL
A:
[39-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
K
C
I
S
G
K
A
V
------
Y
-
S
F
N
A
G
-----------
K
F
M
G
N
F
N
V
K
E
V
--
D
G
C
-
F
M
D
A
Q
K
---------
I
A
I
D
K
--
L
F
S
M
L
K
--
D
-----------
G
V
V
L
K
G
---
N
K
I
N
-
D
T
I
L
I
E
K
-
D
-----------------------------------------------------------------------------------------
21
Fugue
15.20
26%
30
- C4 -
1NRN
-
R:
[1-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
P
R
S
F
L
L
R
N
------
P
N
D
-----
K
-
Y
E
P
F
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
9.17
18%
157
- C8 -
3MCE
2
NACA_HUMAN
A:
[4-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
-----------
P
E
F
S
K
L
G
L
R
Q
V
--
T
G
V
-
T
---------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
1.33
26%
202
- C9 -
2LV4
-
?
A:
[140-158]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
--
E
I
Y
-
N
-
E
T
D
M
---------
A
S
A
S
G
--
Y
T
P
V
--------------------------------------------------------------------------------------------------------------------------------