@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2947: (2016-02-12 )
MPLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLAPAVLHDYEPRLLSPSAVALRETGCSSVAEAAALALAERLGGGRADLLGAKRSDDRASIALARLLTERELP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.......---.30........40........50......-------..60........70........80........90........100.......110.......120....-...130.......140--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPLP
I
P
S
L
L
I
A
GIGCRRGC
S
A
E
H
L
R
A
L
L
---
E
R
T
L
G
EHG
R
S
L
A
E
L
D
A
L
A
SIDGKRDE
P
G
L
-------
R
Q
L
A
T
L
L
ER
P
V
H
F
L
A
P
A
V
L
HDYEPRLLSP
S
A
V
A
L
R
ET
G
C
S
S
V
A
E
A
A
A
L
A
L
A
E
R
LGGGR
A
D
LLGAKRSD
D
-
R
A
S
I
A
L
A
R
L
L
T
ERELP--------
20
HHSearch
94.89
100%
-119
- C2 -
2W6K
5
?
A:
[4-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
P
I
P
S
L
L
I
A
G
I
G
C
R
R
G
C
S
A
E
H
L
R
A
L
L
---
E
R
T
L
G
E
H
G
R
S
L
A
E
L
D
A
L
A
S
I
D
G
K
R
D
E
P
G
L
-------
R
Q
L
A
T
L
L
E
R
P
V
H
F
L
A
P
A
V
L
H
D
Y
E
P
R
L
L
S
P
S
A
V
A
L
R
E
T
G
C
S
S
V
A
E
A
A
A
L
A
L
A
E
R
L
G
G
G
R
A
D
L
L
G
A
K
R
S
D
D
-
R
A
S
I
A
L
A
R
L
L
T
E
R
-----------
1
PsiBlast_PDB
94.45
100%
-118
- C2 -
2W6K
5
?
A:
[5-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
I
P
S
L
L
I
A
G
I
G
C
R
R
G
C
S
A
E
H
L
R
A
L
L
---
E
R
T
L
G
E
H
G
R
S
L
A
E
L
D
A
L
A
S
I
D
G
K
R
D
E
P
G
L
-------
R
Q
L
A
T
L
L
E
R
P
V
H
F
L
A
P
A
V
L
H
D
Y
E
P
R
L
L
S
P
S
A
V
A
L
R
E
T
G
C
S
S
V
A
E
A
A
A
L
A
L
A
E
R
L
G
G
G
R
A
D
L
L
G
A
K
R
S
D
D
-
R
A
S
I
A
L
A
R
L
L
T
E
R
-----------
2
PsiBlast_PDB
93.04
99%
-114
- C2 -
2W6L
4
?
A:
[1-137]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
P
I
P
S
L
L
I
A
G
I
G
S
R
R
G
C
S
A
E
H
L
R
A
L
L
---
E
R
T
L
G
E
H
G
R
S
L
A
E
L
D
A
L
A
S
I
D
G
K
R
D
E
P
G
L
-------
R
Q
L
A
T
L
L
E
R
P
V
H
F
L
A
P
A
V
L
H
D
Y
E
P
R
L
L
S
P
S
A
V
A
L
R
E
T
G
C
S
S
V
A
E
A
A
A
L
A
L
A
E
R
L
G
G
G
R
A
D
L
L
G
A
K
R
S
D
D
-
R
A
S
I
A
L
A
R
L
L
T
-------------
21
HHSearch
64.79
29%
-100
- C2 -
3BY5
1
?
A:
[10-132]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
V
A
G
I
G
C
R
K
G
A
A
S
D
A
I
I
A
A
V
---
R
A
A
E
R
A
F
G
V
T
---
V
D
Y
L
A
T
A
P
L
K
A
D
E
A
G
L
-------
A
E
A
A
K
G
L
S
L
S
L
E
I
V
A
Q
E
R
L
E
A
V
A
A
E
T
M
T
F
S
Q
A
S
L
D
H
S
G
S
P
S
V
S
E
A
A
A
L
A
A
A
G
----
A
G
A
R
L
V
A
P
R
L
V
V
G
-
D
V
T
V
A
I
A
M
T
S
D
-------------
22
HHSearch
61.20
20%
-123
- C2 -
3EEQ
1
?
A:
[204-329]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
K
P
L
K
I
S
I
G
I
G
S
K
K
D
V
K
M
E
E
I
R
D
G
I
---
Y
K
V
L
E
R
L
N
L
K
R
E
R
I
G
I
I
A
S
I
R
E
-----
E
V
-------
K
K
I
A
D
E
F
N
V
R
F
R
L
V
N
E
E
E
I
N
N
F
M
N
P
C
L
T
P
P
S
K
T
------
K
G
V
A
E
I
S
A
L
I
A
G
G
----
R
N
S
K
L
I
L
R
K
I
A
I
S
R
N
S
T
I
A
V
A
T
Y
E
--------------
10
PsiBlast_PDB
58.68
24%
-140
- C2 -
3EEQ
1
?
A:
[213-306]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
G
S
K
K
D
V
K
M
E
E
I
R
D
G
I
---
Y
K
V
L
E
R
L
N
L
K
R
E
R
I
G
I
I
A
S
I
---
R
E
E
--
V
-------
K
K
I
A
D
E
F
N
V
R
F
R
L
V
N
E
E
E
I
N
N
F
M
N
P
C
L
T
P
P
S
K
T
------
K
G
V
A
E
I
S
A
L
-----
I
A
G
G
R
------------------------------------
40
Fugue
55.26
17%
-107
- C2 -
3EEQ
4
?
A:
[2-329]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLIENLWR
G
I
C
I
I
S
A
S
E
D
A
F
S
A
G
E
T
I
K
E
K
L
K
S
F
EI
P
V
V
H
Y
RYKDAE
I
E
T
I
W
K
C
YD
A
I
V
F
VMA
L
E
G
A
T
R
I
V
C
K
YAKSKTED
P
A
I
V
C
I
D
DKIN
Y
V
I
P
LLGGHWG
A
N
D
I
A
R
E
L
S
V
I
L
N
S
T
P
I
I
TKLS
I
E
R
I
A
N
I
L
IAKIINPEN
I
V
K
I
N
A
A
L
L
R
D
E
S
I
C
I
D
GID
V
N
V
N
F
P
ENIKVCSYIISLRGD
K
E
Y
K
D
K
I
V
V
W
L
K
P
L
K
I
S
I
G
I
G
S
K
K
D
V
K
M
E
E
I
R
D
G
I
---
Y
K
V
L
E
R
L
N
L
K
R
E
R
I
G
I
I
A
S
I
-----
R
E
E
V
-------
K
K
I
A
D
E
F
N
V
R
F
R
L
V
N
E
E
E
I
N
N
------
F
M
N
P
C
L
T
P
P
S
K
T
K
G
V
A
E
I
S
A
L
I
A
G
---
G
R
N
S
K
L
I
L
R
K
I
A
I
S
R
-
N
S
T
I
A
V
A
T
Y
E
--------------
3
PsiBlast_PDB
49.49
31%
-115
- C2 -
3BY5
1
?
A:
[10-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
V
A
G
I
G
C
R
K
G
A
A
S
D
A
I
I
A
A
V
R
A
A
E
R
A
F
G
------
V
T
V
D
Y
L
A
T
A
P
L
K
A
D
E
A
G
L
-------
A
E
A
A
K
G
L
S
L
S
L
E
I
V
A
Q
E
R
L
E
A
V
A
A
E
T
M
T
F
S
Q
A
S
L
D
H
S
G
S
P
S
V
S
E
A
A
------------------------------------------------
18
PsiBlast_CBE
42.59
37%
-85
- C2 -
2Y0D
2
?
C:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
42.49
37%
-81
- C2 -
2Y0E
4
?
D:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.14
37%
-88
- C2 -
2Y0C
3
?
A:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
41.94
37%
-87
- C2 -
2Y0D
1
?
B:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
41.49
37%
-87
- C2 -
2Y0E
3
?
A:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
41.45
37%
-89
- C2 -
2Y0D
1
?
D:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
35
HHSearch
41.23
29%
-94
- C2 -
2IVN
1
KAE1_PYRAB
A:
[49-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
M
K
P
L
L
---
R
K
A
L
S
E
A
G
V
S
L
D
D
I
D
V
I
A
F
S
Q
G
P
G
L
G
P
A
L
R
V
V
A
T
A
A
R
A
L
A
V
K
Y
R
K
P
I
V
G
V
N
H
C
I
A
---------------------------------------------------------------------------
6
PsiBlast_PDB
40.93
37%
-89
- C2 -
2Y0D
2
?
A:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
40.58
37%
-78
- C2 -
2Y0C
1
?
C:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
40.58
37%
-82
- C2 -
2Y0E
2
?
B:
[267-310]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
Y
A
G
C
G
Y
G
G
S
C
F
P
K
D
V
E
A
L
I
----
R
T
A
D
E
H
G
Q
S
L
Q
I
L
K
A
V
S
S
V
N
A
T
Q
----------------------------------------------------------------------------------------------------------
36
HHSearch
40.00
22%
-66
- C2 -
2X3E
-
FABH_PSEAE
A:
[223-267]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
M
S
D
S
V
---
R
R
V
L
D
R
V
G
W
Q
A
S
D
L
H
H
L
V
P
H
Q
A
N
T
--
R
I
L
-------
A
A
V
A
D
Q
L
D
L
P
V
-----------------------------------------------------------------------------------
42
Fugue
39.92
20%
-50
* C1 *
4WZ9
4
?
A:
[40-926]
QAVDERYRLPTT
S
I
P
I
H
YD
L
H
L
R
T
EIHRNER
T
F
T
G
T
V
G
I
Q
L
Q
V
VQATD
K
L
V
M
H
N
R
GLVMS
S
A
K
V
S
S
LPNGVT
G
A
P
T
L
IG
D
V
Q
Y
S
T
D
TTFE
H
I
T
F
T
S
P
T
I
L
Q
P
G
T
Y
L
L
E
V
A
F
Q
G
R
L
A
TNDDGF
Y
V
S
S
Y
V
A
DNG
E
R
R
Y
L
A
T
T
Q
F
ESTSARMAFPCYDEPGL
K
A
T
F
T
V
S
I
T
H
S
LS
Y
K
A
I
S
NMPQK
T
T
T
D
I
ET
D
M
R
T
T
F
F
E
K
T
P
A
M
S
TYL
L
A
F
V
V
SD
F
Q
L
R
L
S
GA
Q
R
V
Y
V
RPNAFNEA
T
F
A
L
E
A
G
V
K
I
L
K
V
L
D
D
H
L
GIPYDTYMP
K
L
D
Q
I
A
I
PDFAAGAMENWG
L
V
T
Y
REQALLFNPAVST
Y
R
G
K
T
N
V
A
T
T
I
A
H
E
Y
A
H
QWFGNLVSPEWWEY
I
W
L
N
E
G
F
A
T
L
Y
E
F
Y
A
L
D
M
A
Y
PGQEYWELFNQQV
I
Q
Y
A
M
G
Q
D
G
QASTRPM
N
W
N
A
A
T
P
G
E
I
S
A
L
FDRVAY
D
K
S
G
S
V
L
N
M
M
R
H
V
L
G
D
D
N
W
K
A
G
L
K
A
Y
L
T
D
R
AL
Q
G
A
V
D
E
Q
L
Y
A
G
L
Q
S
A
I
EGKGVLPNGVT
V
A
Q
I
M
R
T
W
T
N
E
A
G
Y
P
V
L
N
V
R
R
SYDT
G
D
V
I
I
S
Q
E
RFYND
R
K
V
P
N
TNIWM
I
P
Y
N
Y
V
H
QAKADFNEFDD
F
Q
W
L
ATK
A
A
R
I
E
T
TVPAN
E
W
I
V
F
NKQQVGY
Y
R
V
N
Y
D
E
H
N
W
E
L
I
T
N
A
L
H
E
NWASIH
R
L
N
R
A
Q
L
I
D
D
A
Y
W
L
A
R
S
GRLD
L
R
V
A
L
R
F
M
TYLRNERE
Y
A
P
W
T
A
A
N
V
A
L
T
Y
F
N
N
R
L
RGTAE
Y
H
N
F
L
I
F
V
D
A
L
IEDIYSLLTIDAVSPDDT
L
L
H
K
Y
L
V
Q
T
I
S
T
W
A
C
S
M
GY
T
D
C
L
M
K
T
A
A
L
L
K
A
E
A
S
GTGPAVHPDI
A
S
V
T
Y
C
Y
GMRSAL
E
S
E
F
Q
Y
L
Y
R
K
M
M
N
S
K
N
L
A
E
R
T
M
L
I
D
S
L
G
C
S
N
--
N
K
E
F
L
K
A
F
L
---
T
T
A
L
G
S
I
N
Y
R
A
D
E
R
R
R
V
V
Q
A
I
Y
S
G
G
R
T
G
V
-------
D
A
L
I
E
F
L
M
D
P
A
--
L
V
N
E
F
V
S
T
L
S
T
S
T
L
N
S
A
L
S
A
I
A
S
R
T
N
N
V
E
E
M
N
K
L
N
A
L
I
T
A
L
G
-
S
R
V
N
S
Q
T
A
A
N
L
R
T
-
T
A
Q
A
N
L
D
W
V
N
G
F
E
G
L
M
L
S
N
F
L
AEA