@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0154: (2016-03-12 )
MKYIDIANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFAKKNADGGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFPNGKWFKRLTTKDHAHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYNLLKHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVSWKCFSMDLCKEPSKRP

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]
11 PsiBlast_PDB 90.1228% -97 - C1 -3FVQ - FBPC_NEIG1 -
55 HHSearch 87.7528%-108 - C1 -2IHY - ? -
52 HHSearch 83.9426%-100 - C1 -3GFO - ECFA3_CLOP1 -
53 HHSearch 82.7327% -94 - C1 -2OLJ - ? -
1 PsiBlast_PDB 82.3028%-111 - C1 -2NQ2 - Y1470_HAEIN -
38 HHSearch 81.4829% -90 - C1 -1Z47 - ? -
57 HHSearch 81.2126% -94 - C1 -1B0U 5.7 HISP_SALTY
45 HHSearch 79.8826% -87 * C1 *3TUI - METN_ECOLI -
63 Fugue 79.8226% -86 - C1 -1Z47 - ? -
6 PsiBlast_PDB 79.0732%-109 - C1 -4HUQ - ECFA1_LACBA -
7 PsiBlast_PDB 77.8032%-111 - C1 -4HZU - ECFA1_LACBA -
46 HHSearch 77.5526% -84 - C1 -1OXX - ? -
39 HHSearch 77.3527% -84 - C1 -2IT1 - ? -
58 HHSearch 76.1928% -87 - C1 -2PCJ - LOLD_AQUAE -
42 HHSearch 75.6628% -92 - C- -3FVQ - FBPC_NEIG1 -
67 Fugue 75.5425% -92 - C1 -3TUZ - METN_ECOLI -
5 PsiBlast_PDB 75.0230%-101 - C1 -1Z47 - ? -
62 Fugue 73.8024% -75 - C1 -1OXS - ? -
9 PsiBlast_PDB 73.7229% -85 - C1 -2IT1 - ? -
8 PsiBlast_PDB 73.2425%-108 - C1 -4G1U - HMUV_YERPE -
24 PsiBlast_CBE 68.0531% -91 - C1 -1L2T 4.4 Y796_METJA
25 PsiBlast_CBE 67.5431% -91 - C1 -1L2T 4.2 Y796_METJA
26 PsiBlast_CBE 66.7231% -96 - C1 -3TIF 4.2 Y796_METJA
27 PsiBlast_CBE 65.9431% -93 - C1 -3TIF 4.1 Y796_METJA
32 PsiBlast_CBE 65.7232%-111 - C1 -4U00 4.5 ?
36 PsiBlast_CBE 50.2134% -71 - C1 -2HYD 4.4 Y1866_STAAM
35 PsiBlast_CBE 49.7134% -72 - C1 -2HYD 4.5 Y1866_STAAM
34 PsiBlast_CBE 47.4434% -69 - C1 -2ONJ 5.5 Y1866_STAAM
33 PsiBlast_CBE 46.9234% -69 - C1 -2ONJ 5.1 Y1866_STAAM