@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0837: (2016-03-19 )
GGIVILKRFFSYYKPYRTLFIIDFGCAVLAAILELAFPVAVNHVIDTLLPGKDFGLIITAALALLFFYILNTFMQYIVTYFGHMLGLNIETDMRRDLFSHLQKQPFGFYDNQKTGKLMSRMTTDLFEIGEVAHHGPEDIFISIMSLFGAFFLMLNINVKLAISTFILVPILTVLIVYFNKRMTKVTTGIFKDLGNFNAGVENAISGVRVVQAFANEPHEKGRFKVLNQAYRKSKLMFYKVMGLSFSFNYFLMRLISLFALLFGAYFTINGEISYGEFVGFILLTNVFIRPIEKINNVIESYPKGFAGFKRFLEVMDTEPAIQDEKDAKPAEAFRGDIAYNQVSFEYSDGKNVLNHINLSIKAGETVAFVGPSGAGKTTICNLLPRFYDVSAGEITIDGENIKRFTLPSLRAQIGVVQQDVFLFSGTVRENIAYGKLDASDEEIEHVVKLAHLSKVVEEMPDGLDTIIGERGVKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETEQVIQASLEELAEGRTTLIIAHRLATIKHADRIIVVNETGIAETGTHDELLAQDNGAYKRLYDAQFNTI

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]



ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



ADP_A_2(5DGX)
?
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



AGS_A_3(4S0F)
?
[Raw transfer]



ADP_D_10(1MV5)

[Raw transfer]



ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]



AGS_B_4(4S0F)
?
[Raw transfer]
21 PsiBlast_CBE 87.9837%-120 - C1 -2ONJ 6.2 Y1866_STAAM
2 PsiBlast_PDB 87.3637%-120 - C1 -2ONJ 6.2 Y1866_STAAM
22 PsiBlast_CBE 86.9737%-119 - C1 -2HYD 4.6 Y1866_STAAM
1 PsiBlast_PDB 86.9337%-119 - C1 -2HYD 6.0 Y1866_STAAM
5 PsiBlast_PDB 85.8736%-122 - C1 -4Q4A - Y288_THEMA -
6 PsiBlast_PDB 85.3536%-118 - C1 -4Q4H - Y288_THEMA -
4 PsiBlast_PDB 85.0136%-121 - C1 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 83.9236%-119 - C1 -4Q4J - Y288_THEMA -
15 PsiBlast_PDB 81.1832%-112 - C1 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 81.0532%-113 - C1 -4AYX 5.6 ABCBA_HUMAN
17 PsiBlast_PDB 80.5732%-120 - C1 -4RY2 - ? -
104 HHSearch 80.2334%-105 - C1 -3B60 - MSBA_SALTY -
125 Fugue 79.8834%-105 - C1 -3B60 - MSBA_SALTY -
13 PsiBlast_PDB 79.3832%-111 - C1 -4AYT - ABCBA_HUMAN -
24 PsiBlast_CBE 79.1536%-104 - C1 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 79.0236%-104 - C1 -3B60 - MSBA_SALTY -
25 PsiBlast_CBE 78.9836%-104 - C1 -3B60 - MSBA_SALTY -
106 HHSearch 78.9630%-111 - C1 -3ZDQ - ABCBA_HUMAN -
32 PsiBlast_CBE 78.6832%-110 - C1 -4S0F 2.1 ?
10 PsiBlast_PDB 78.3136%-104 - C1 -3B60 - MSBA_SALTY -
18 PsiBlast_PDB 77.9332%-107 - C1 -4S0F 2.8 ?
16 PsiBlast_PDB 77.6731%-116 - C1 -4AYW 5.6 ABCBA_HUMAN
55 PsiBlast_CBE 61.9244% -99 - C1 -3NH9 6.1
53 PsiBlast_CBE 60.8744%-105 - C1 -3NHB 6.5
54 PsiBlast_CBE 60.8444%-104 - C1 -3NHA 6.5
58 PsiBlast_CBE 59.6850%-110 - C1 -1MV5 5.4 LMRA_LACLA
113 HHSearch 59.3649%-102 - C1 -1MV5 6.5 LMRA_LACLA
59 PsiBlast_CBE 58.4950%-105 - C1 -1MV5 6.4 LMRA_LACLA
60 PsiBlast_CBE 57.5950%-105 - C1 -1MV5 6.5 LMRA_LACLA
57 PsiBlast_CBE 56.7450%-109 - C1 -1MV5 4.9
61 PsiBlast_CBE 56.7246%-103 - C1 -5DGX 6.6 ?
90 PsiBlast_CBE 52.3932% -88 - C1 -4PL0 6.3 MCJD_ECOLX
91 PsiBlast_CBE 50.2532% -88 - C1 -4PL0 6.7 MCJD_ECOLX