@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1447: (2016-03-24 )
MKKIIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSISLFGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNKDKEDIDYALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISINKRIIFDGSAHEYQHYLADRELEILAEQRRREDACLDCDASPV

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]
2 PsiBlast_PDB 91.6134%-120 - C1 -3GFO - ECFA3_CLOP1 -
69 HHSearch 86.7732%-106 - C1 -3GFO - ECFA3_CLOP1 -
27 PsiBlast_CBE 85.0332%-112 - C1 -4MKI 2.4 ECFA2_CALS4
64 HHSearch 80.8830%-108 - C1 -3D31 - ? -
63 HHSearch 79.3031%-110 * C1 *3TUI - METN_ECOLI -
49 Fugue 78.2626% -95 - C1 -1Z47 - ? -
28 PsiBlast_CBE 77.7732%-114 - C1 -4MKI 2.2 ECFA2_CALS4
7 PsiBlast_PDB 76.6431%-101 - C1 -4U00 - ? -
24 PsiBlast_CBE 76.5531% -98 - C1 -4U02 - ? -
8 PsiBlast_PDB 76.4431% -96 - C1 -4U02 - ? -
53 Fugue 75.9430% -94 - C1 -3B60 - MSBA_SALTY -
73 HHSearch 74.9929%-101 - C1 -1B0U - HISP_SALTY -
46 Fugue 74.8327%-112 - C1 -3TUZ - METN_ECOLI -
74 HHSearch 74.4831%-123 - C1 -2NQ2 - Y1470_HAEIN -
22 PsiBlast_CBE 74.3031% -94 - C1 -4U02 - ? -
23 PsiBlast_CBE 72.9131%-100 - C1 -4U02 - ? -
11 PsiBlast_PDB 72.6031%-114 - C1 -1JI0 - ? -
1 PsiBlast_PDB 72.3232%-123 - C1 -2NQ2 - Y1470_HAEIN -
62 HHSearch 72.3129% -98 - C1 -1OXX - ? -
18 PsiBlast_PDB 71.9430%-101 - C1 -4YMV - ? -
13 PsiBlast_PDB 71.5330%-107 - C1 -1G6H 4.7 LIVG_METJA
14 PsiBlast_PDB 68.4330% -95 - C1 -1G9X 5.3 LIVG_METJA
25 PsiBlast_CBE 67.3331% -84 - C1 -1L2T 6.5 Y796_METJA
9 PsiBlast_PDB 66.6631% -84 - C1 -1L2T 6.4 Y796_METJA
10 PsiBlast_PDB 60.8230% -83 - C1 -3TIF 6.1 Y796_METJA