@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1879: (2016-03-29 )
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQAANVEKA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_R_3(3PF4)
CSPB_BACSU
[Raw transfer]

-

TRS_B_6(1C9O)
CSPB_BACCL
[Raw transfer]




TRS_A_7(1C9O)
CSPB_BACCL
[Raw transfer]




TRS_A_7(1C9O)
CSPB_BACCL
[Raw transfer]




TRS_A_7(1C9O)
CSPB_BACCL
[Raw transfer]




CHAIN_S_4(3PF5)
CSPB_BACSU
[Raw transfer]

-

CHAIN_R_3(3PF4)
CSPB_BACSU
[Raw transfer]

-

NACID_B_1(2ES2)
CSPB_BACSU
[Raw transfer]

-

CHAIN_R_3(3PF5)
CSPB_BACSU
[Raw transfer]

-

17 PsiBlast_PDB 90.9676%-132 - C4 -2I5L - CSPB_BACSU -
10 PsiBlast_PDB 89.7673% -91 - C4 -1CSP - CSPB_BACSU -
15 PsiBlast_PDB 88.6773% -92 - C4 -3PF5 2.8 CSPB_BACSU
11 PsiBlast_PDB 88.3573% -98 - C4 -1CSQ - CSPB_BACSU -
2 PsiBlast_PDB 88.2080%-104 - C4 -1HZC - CSPB_BACCL -
66 HHSearch 88.0377%-101 - C4 -1C9O 3.1 CSPB_BACCL
25 PsiBlast_CBE 87.9873% -91 - C4 -3PF4 7.3 CSPB_BACSU
54 Fugue 87.9078%-109 - C4 -1C9O 3.1 CSPB_BACCL
24 PsiBlast_CBE 87.5773% -96 - C4 -3PF5 6.7 CSPB_BACSU
14 PsiBlast_PDB 87.5073% -92 - C4 -3PF4 Error CSPB_BACSU
6 PsiBlast_PDB 86.5378%-102 - C4 -1HZB - CSPB_BACCL -
7 PsiBlast_PDB 86.4278%-100 - C4 -1I5F - CSPB_BACCL -
4 PsiBlast_PDB 86.3878%-103 - C4 -1C9O 3.1 CSPB_BACCL
8 PsiBlast_PDB 86.3073%-107 - C4 -2ES2 9.7 CSPB_BACSU
3 PsiBlast_PDB 85.7278%-102 - C4 -1HZA - CSPB_BACCL -
16 PsiBlast_PDB 85.7072% -97 - C4 -2I5M - CSPB_BACSU -
22 PsiBlast_CBE 85.3178% -97 - C4 -1C9O 2.2 CSPB_BACCL
9 PsiBlast_PDB 85.2773%-101 - C4 -2F52 - CSPB_BACSU -
23 PsiBlast_CBE 85.2578% -96 - C4 -1HZB - CSPB_BACCL -
1 PsiBlast_PDB 85.0080% -96 - C4 -1HZ9 - CSPB_BACCL -