@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1896: (2016-03-29 )
VKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQGVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSSVEVISESHDYPITPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGSAPEGTTELFHTKYFEEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPRITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDPENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGSVPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



NB8_A_3(2XTI)
?
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



ATP_B_10(1B8A)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]



ATP_B_8(2XTI)
?
[Raw transfer]



ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]



EPE_B_8(1WYD)
SYDND_SULTO
[Raw transfer]
2 PsiBlast_PDB 98.0546% -85 - C3 -1X55 7.8 SYN_PYRHO
1 PsiBlast_PDB 97.8546% -87 - C3 -1X54 8.2 SYN_PYRHO
29 HHSearch 97.2545% -84 - C3 -1X54 8.2 SYN_PYRHO
3 PsiBlast_PDB 95.2646% -96 - C3 -1X56 - SYN_PYRHO -
5 PsiBlast_PDB 88.6533% -89 - C3 -3M4Q - ? -
4 PsiBlast_PDB 88.5133% -87 - C3 -3M4P - ? -
25 PsiBlast_CBE 88.3734% -92 - C3 -1WYD 2.3 SYDND_SULTO
21 PsiBlast_CBE 88.0933% -87 - C3 -3M4P - ? -
23 PsiBlast_CBE 88.0233% -89 - C3 -3M4P - ? -
28 HHSearch 87.9435% -87 - C3 -1WYD 2.3 SYDND_SULTO
7 PsiBlast_PDB 87.8032% -89 - C3 -2XTI 8.3 ?
8 PsiBlast_PDB 87.6034% -89 - C3 -1WYD 2.3 SYDND_SULTO
30 HHSearch 86.8734% -89 - C3 -3M4P - ? -
6 PsiBlast_PDB 86.5732% -93 - C3 -2XGT 7.9 ?
32 HHSearch 86.5334% -79 - C3 -3NEM 8.3 SYD_THEKO
24 PsiBlast_CBE 86.5132% -92 - C3 -2XTI 6.4 ?
11 PsiBlast_PDB 86.1734% -78 - C3 -3NEN - SYD_THEKO -
9 PsiBlast_PDB 85.9334% -78 - C3 -3NEL 2.7 SYD_THEKO
10 PsiBlast_PDB 85.9034% -78 - C3 -3NEM 8.3 SYD_THEKO
35 HHSearch 85.3633% -89 - C3 -2XGT 7.9 ?
12 PsiBlast_PDB 85.3334% -79 - C3 -1B8A 6.8 SYD_THEKO
26 PsiBlast_CBE 85.3034% -75 - C3 -3NEM 7.2 SYD_THEKO
27 PsiBlast_CBE 84.9934% -77 - C3 -1B8A 7.3 SYD_THEKO
48 Fugue 81.6133% -84 - C3 -1B8A 6.8 SYD_THEKO