@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2719: (2016-04-06 )
MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNKSNRS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IMD_A_5(1WKQ)
GUAD_BACSU
[Raw transfer]




IMD_B_6(1WKQ)
GUAD_BACSU
[Raw transfer]




CHAIN_H_4(2B3J)
TADA_STAAM
[Raw transfer]

-

GOL_D_16(2B3J)
TADA_STAAM
[Raw transfer]




GOL_B_12(2B3J)
TADA_STAAM
[Raw transfer]




CHAIN_G_3(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_F_2(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]

-

21 PsiBlast_CBE 94.9755% -87 - C3 -2B3J 10.2 TADA_STAAM
71 HHSearch 94.2249% -88 - C3 -2NX8 - TADA_STRP6 -
72 HHSearch 93.7854% -91 - C3 -2B3J 8.7 TADA_STAAM
2 PsiBlast_PDB 93.5949% -90 - C3 -2NX8 - TADA_STRP6 -
22 PsiBlast_CBE 93.5655% -96 - C3 -2B3J 8.5 TADA_STAAM
23 PsiBlast_CBE 92.8955% -91 - C3 -2B3J 8.5 TADA_STAAM
1 PsiBlast_PDB 92.4855% -94 - C3 -2B3J 8.7 TADA_STAAM
24 PsiBlast_CBE 90.3148% -95 - C3 -1WWR - TADA_AQUAE -
26 PsiBlast_CBE 89.3548% -96 - C3 -1WWR - TADA_AQUAE -
3 PsiBlast_PDB 88.2748% -95 - C3 -1WWR - TADA_AQUAE -
70 HHSearch 88.1039% -92 - C3 -1Z3A - TADA_ECOLI -
25 PsiBlast_CBE 88.0148% -91 - C3 -1WWR - TADA_AQUAE -
73 HHSearch 87.5347% -93 - C3 -1WWR - TADA_AQUAE -
28 PsiBlast_CBE 85.9039% -98 - C3 -1Z3A - TADA_ECOLI -
5 PsiBlast_PDB 85.3639% -96 - C3 -1Z3A - TADA_ECOLI -
6 PsiBlast_PDB 83.2637% -94 - C3 -3OCQ - ? -
27 PsiBlast_CBE 82.8747% -84 - C3 -2A8N - TADA_AGRFC -
82 HHSearch 79.3437% -93 - C3 -2HXV - ? -
29 PsiBlast_CBE 78.9033% -84 - C3 -3DH1 - ADAT2_HUMAN -
31 PsiBlast_CBE 78.8533% -86 - C3 -3DH1 - ADAT2_HUMAN -
8 PsiBlast_PDB 68.0538% -81 - C3 -1WKQ 2.8 GUAD_BACSU
32 PsiBlast_CBE 67.5238% -81 - C3 -1WKQ 2.8 GUAD_BACSU