@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00064_NRAM_I: (2014-08-12 )
MLPSTIQTLTLFLTSGGVLLSLYVSASLSYLLYSDILLKFSPKITAPTMTLDCTNASNVQAVNRSATKEMTFLLPEPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHLISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDCYLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNNYTAKRPFVKLNVETDTAEIRLMCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVKYDGDPWTDSDALDPSGVMVSIKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ZMR_B_9(1A4G)
NRAM_INBBE
[Raw transfer]



ZMR_A_8(1A4G)
NRAM_INBBE
[Raw transfer]



BCZ_A_5(3K37)
?
[Raw transfer]



LNV_A_8(3TI3)
?
[Raw transfer]



SIA_B_6(1NSC)
NRAM_INBBE
[Raw transfer]



ZMR_A_10(3B7E)
NRAM_I18A0
[Raw transfer]



DPC_A_8(1A4Q)
NRAM_INBBE
[Raw transfer]



BCZ_B_8(3K37)
?
[Raw transfer]



DPC_B_9(1A4Q)
NRAM_INBBE
[Raw transfer]



DAN_B_9(1NSD)
NRAM_INBBE
[Raw transfer]



RA2_A_5(1B9V)
NRAM_INBLE
[Raw transfer]



RAI_A_5(1B9T)
NRAM_INBLE
[Raw transfer]



IBA_E_5(1VCJ)
NRAM_INBLE
[Raw transfer]



FDI_A_5(1B9S)
NRAM_INBLE
[Raw transfer]



9AM_A_8(1F8D)
NRAM_I75A5
[Raw transfer]



ZMR_E_5(2HTQ)
NRAM_I63A3
[Raw transfer]



1SJ_A_3(4KS2)
?
[Raw transfer]



1SL_A_2(4KS3)
?
[Raw transfer]



G39_A_6(4B7J)
?
[Raw transfer]



2H8_A_3(4KS1)
NRAM_I63A3
[Raw transfer]



1SN_A_2(4KS4)
?
[Raw transfer]



1SO_A_3(4KS5)
?
[Raw transfer]



22N_A_2(4M3M)
?
[Raw transfer]
2 PsiBlast_PDB 98.7098% -77 - C5 -1A4Q 7.0 NRAM_INBBE
1 PsiBlast_PDB 98.5598% -74 - C5 -1A4G 4.9 NRAM_INBBE
21 PsiBlast_CBE 98.4898% -78 - C5 -1NSD 5.0 NRAM_INBBE
25 PsiBlast_CBE 98.3798% -76 - C5 -1A4G 5.2 NRAM_INBBE
22 PsiBlast_CBE 98.2598% -80 - C5 -1NSC 5.7 NRAM_INBBE
24 PsiBlast_CBE 97.9598% -75 - C5 -1A4Q 7.1 NRAM_INBBE
26 PsiBlast_CBE 97.2694% -76 - C5 -3K37 5.2 ?
4 PsiBlast_PDB 97.0594% -77 - C5 -3K37 5.9 ?
11 PsiBlast_PDB 96.8894% -77 - C5 -1VCJ 5.4 NRAM_INBLE
8 PsiBlast_PDB 96.8394% -77 - C5 -1B9T 3.7 NRAM_INBLE
10 PsiBlast_PDB 96.6594% -74 - C5 -1B9S 4.1 NRAM_INBLE
9 PsiBlast_PDB 96.3194% -75 - C5 -1B9V 4.8 NRAM_INBLE
87 HHSearch 72.4231% -55 - C5 -1F8D 3.6 NRAM_I75A5
89 HHSearch 71.6136% -54 - C5 -3B7E 5.2 NRAM_I18A0
90 HHSearch 70.9935% -51 - C5 -2HTQ 3.8 NRAM_I63A3
81 HHSearch 70.2832% -52 - C5 -4B7J 4.7 ?
20 PsiBlast_PDB 68.9835% -59 - C5 -3TI3 5.2 ?
16 PsiBlast_PDB 66.5936% -59 - C5 -4KS3 4.9 ?
14 PsiBlast_PDB 65.8336% -57 - C5 -4KS1 5.6 NRAM_I63A3
18 PsiBlast_PDB 65.8036% -59 - C5 -4KS5 4.7 ?
17 PsiBlast_PDB 65.6236% -58 - C5 -4KS4 4.9 ?
15 PsiBlast_PDB 65.5736% -57 - C5 -4KS2 5.9 ?
13 PsiBlast_PDB 65.4136% -57 - C5 -4M3M 2.9 ?