@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 452_tII_MAIZE: (2014-05-08 )
QQCSAAQLAACAPAIISGSPPTASCCSNLRAQEPCFCQYARNPAYSSYINSPNARRTLTSCGIAVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
1 HHSearch 90.7964%-124 - C3 -1N89 6.2 NLT2G_WHEAT
2 HHSearch 80.4357%-128 - C3 -1L6H - NLTPX_ORYSJ -
26 SP3 80.1657%-128 - C3 -1L6H - NLTPX_ORYSJ -
16 Fugue 80.1657%-128 - C3 -1L6H - NLTPX_ORYSJ -
17 Fugue 76.1532%-100 - C3 -2RKN - DIRL1_ARATH -
3 HHSearch 71.9428%-114 - C3 -2RKN - DIRL1_ARATH -
5 HHSearch 65.5530% -92 - C3 -1SIY - NLTP1_VIGRR -
27 SP3 65.1529% -80 - C3 -1FK5 - NLTP_MAIZE -
8 HHSearch 65.1231% -93 - C3 -1AFH - NLTP_MAIZE -
9 HHSearch 63.9530%-103 - C3 -1T12 - NLTP1_TOBAC -
29 SP3 59.4322% -82 - C3 -1KNG - CYCY_BRADU -
4 HHSearch 56.4325% -65 - C3 -1BWO - NLTP1_WHEAT -
7 HHSearch 55.8532% -93 - C3 -2ALG - NLTP1_PRUPE -
11 HHSearch 53.7727%-101 - C3 -1HYP - HPSE_SOYBN -
20 Fugue 49.4413% -90 - C3 -1S6D - 2SS8_HELAN -
28 SP3 49.1710% -91 - C3 -1U78 - TC3A_CAEEL -
34 SP3 47.4111%-101 * C3 *1TC3 - TC3A_CAEEL -
24 Fugue 43.0013% -64 - C3 -2CKX - ? -
32 SP3 42.8016% -68 - C3 -1LU4 - -
21 Fugue 41.2310% -64 - C3 -1EZF - FDFT_HUMAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
42 94.22100%-119 - C- -M042 - -
43 92.86100%-124 - C- -M043 - -
41 90.11100%-115 - C- -M041 - -