@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1396: (2016-03-25 )
MTEHKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDWRNKVNFIRQIGYVEDQD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]



GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]



GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]



GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]



GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]



GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]
3 PsiBlast_PDB 95.2944%-116 - C1 -3IEV 10.6 ERA_AQUAE
57 HHSearch 94.5446%-112 - C1 -3IEV 10.5 ERA_AQUAE
1 PsiBlast_PDB 94.2944%-119 - C1 -3R9W 10.4 ERA_AQUAE
2 PsiBlast_PDB 93.7944%-114 - C1 -3R9X 10.1 ERA_AQUAE
6 PsiBlast_PDB 88.1339%-118 - C1 -3IEU 7.4 ERA_ECOLI
21 PsiBlast_CBE 87.7739%-118 - C1 -3IEU 7.4 ERA_ECOLI
8 PsiBlast_PDB 86.1939%-103 - C1 -1WF3 10.1 ERA_THET8
22 PsiBlast_CBE 86.1439%-113 - C1 -1EGA - ERA_ECOLI -
4 PsiBlast_PDB 85.7739%-110 - C1 -1EGA - ERA_ECOLI -
56 HHSearch 85.3739% -92 - C1 -1WF3 10.1 ERA_THET8
55 HHSearch 84.6039%-107 - C1 -1EGA - ERA_ECOLI -
45 Fugue 69.2339%-108 - C1 -1EGA - ERA_ECOLI -
23 PsiBlast_CBE 62.7933%-140 - C1 -4KYU 7.3 DER_BACSU
12 PsiBlast_PDB 61.9733%-128 - C1 -4KYU 5.9 DER_BACSU
10 PsiBlast_PDB 61.5832%-127 - C1 -4DCU 7.1 DER_BACSU
11 PsiBlast_PDB 61.4332%-133 - C1 -4DCV - DER_BACSU -
9 PsiBlast_PDB 60.3032%-130 - C1 -4DCS - DER_BACSU -
18 PsiBlast_PDB 60.1128%-157 - C1 -3PR1 - ENGB_THEMA -
13 PsiBlast_PDB 60.0231%-138 - C1 -2HJG 6.7 DER_BACSU
63 HHSearch 58.4829%-107 - C1 -1MKY - DER_THEMA -