@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1701: (2016-03-28 )
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_2(4GT8)

[Raw transfer]
1 PsiBlast_PDB 95.41100% -85 - C2 -4GT8 6.7
3 PsiBlast_PDB 64.5522% -56 - C2 -3EHF - DESK_BACSU -
6 PsiBlast_PDB 61.0621% -49 - C2 -3EHH - DESK_BACSU -
4 PsiBlast_PDB 59.8922% -60 - C2 -3GIF - DESK_BACSU -
7 PsiBlast_PDB 59.2321% -47 - C2 -3EHJ - DESK_BACSU -
2 PsiBlast_PDB 58.2822% -53 - C2 -3GIG - DESK_BACSU -
18 Fugue 51.0310% -53 - C2 -1JM6 - PDK2_RAT -
9 Fugue 50.9619% -42 - C2 -3EHG - -
16 Fugue 48.3714% -54 - C2 -4I5S - ? -
10 Fugue 48.0825% -45 - C2 -3ZXQ - DOST_MYCTU -
15 Fugue 47.6912% -54 - C2 -1GKZ - BCKD_RAT -
31 HHSearch 44.7424% -15 - C2 -1YSR - PRRB_MYCTU -
11 Fugue 44.2815% -26 - C2 -1ID0 - -
12 Fugue 42.4616% -37 - C2 -1L0O - SP2AB_GEOSE -
19 HHSearch 42.0423% -43 - C2 -3EHH - DESK_BACSU -
33 HHSearch 41.1714% -40 - C2 -1I58 - CHEA_THEMA -
27 HHSearch 40.9723% -33 - C2 -3EHG - -
8 PsiBlast_PDB 40.2524% -26 - C2 -3EHG - -
30 HHSearch 39.6813% -29 - C2 -1B3Q - CHEA_THEMA -
32 HHSearch 39.0421% -15 - C2 -3SL2 - -