@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1886: (2016-03-29 )
MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALIS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2GN_A_2(3ZM6)
?
[Raw transfer]



1LG_A_2(2AM1)
?
[Raw transfer]



IGM_A_2(3ZM5)
?
[Raw transfer]



ALA_A_2(4CVM)
?
[Raw transfer]



ANP_A_6(4CVM)
?
[Raw transfer]



ALA_A_2(4CVK)
?
[Raw transfer]



2LG_A_2(2AM2)
?
[Raw transfer]



ATP_A_2(4QDI)
?
[Raw transfer]



ANP_A_2(4ZIY)
?
[Raw transfer]



API_A_6(4CVK)
?
[Raw transfer]



MUB_A_4(4CVK)
?
[Raw transfer]
6 PsiBlast_PDB 98.1832% -88 - C2 -4CVM 7.0 ?
8 PsiBlast_PDB 96.9331% -74 - C2 -4QDI 9.1 ?
5 PsiBlast_PDB 96.1632% -91 - C2 -4CVK 2.8 ?
1 PsiBlast_PDB 95.3033% -80 - C2 -3ZM5 7.9 ?
3 PsiBlast_PDB 95.0532% -77 - C2 -2AM1 7.6 ?
4 PsiBlast_PDB 94.8132% -79 - C2 -2AM2 6.7 ?
7 PsiBlast_PDB 94.5531% -80 - C2 -4ZIY 8.9 ?
2 PsiBlast_PDB 94.2433% -80 - C2 -3ZM6 8.5 ?
10 PsiBlast_PDB 90.4429% -70 - C2 -3ZL8 - ? -
9 PsiBlast_PDB 78.5532% -21 - C2 -1GG4 - MURF_ECOLI -
30 HHSearch 71.9623% -55 - C2 -3NRS - ? -
29 HHSearch 70.5821% -53 - C2 -1P3D - MURC_HAEIN -
21 HHSearch 69.9832% 17 - C2 -1GG4 - MURF_ECOLI -
27 HHSearch 68.0420% -40 - C2 -2VOS - ? -
13 PsiBlast_PDB 67.4524% -65 - C2 -1EEH - MURD_ECOLI -
12 PsiBlast_PDB 64.5524% -60 - C2 -1E0D - MURD_ECOLI -
32 HHSearch 64.2218% -49 * C2 *1O5Z - ? -
24 HHSearch 63.8820% -51 - C2 -3LK7 - MURD_STRA5 -
11 PsiBlast_PDB 61.6124% -65 - C2 -3LK7 - MURD_STRA5 -
15 PsiBlast_PDB 59.8625% -56 - C2 -1GQY - MURC_HAEIN -